Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15385

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,333,643	+		DZA65_RS15380	0.33	-2.1
3,333,802	+		DZA65_RS15380	0.47	-0.5
3,333,802	+		DZA65_RS15380	0.47	-2.9
3,333,858	+		DZA65_RS15380	0.52	-1.7
3,333,858	+		DZA65_RS15380	0.52	-0.5
3,334,055	-		DZA65_RS15380	0.69	-2.5
3,334,055	-		DZA65_RS15380	0.69	+1.3
3,334,113	+		DZA65_RS15380	0.74	-0.2
3,334,113	+		DZA65_RS15380	0.74	-1.7
3,334,113	+		DZA65_RS15380	0.74	-2.1
3,334,113	+		DZA65_RS15380	0.74	+1.1
3,334,114	-		DZA65_RS15380	0.74	-1.7
3,334,114	-		DZA65_RS15380	0.74	+0.0
3,334,114	-		DZA65_RS15380	0.74	-2.7
3,334,114	-				-1.3
3,334,114	-		DZA65_RS15380	0.74	-3.1
3,334,114	-		DZA65_RS15380	0.74	-2.3
3,334,374	+				+1.0
3,334,374	+				-2.1
3,334,381	+				-0.7
3,334,381	+				-0.6
3,334,421	-				+1.4
3,334,421	-				+0.9
3,334,466	+				-0.2
3,334,466	+				+1.3
3,334,466	+				+1.0
3,334,467	-				+0.3
3,334,467	-				-0.4
3,334,467	-				+2.4
3,334,554	+				+0.5
3,334,576	+				+0.5
3,334,576	+				+1.7
3,334,577	-				-0.4
3,334,582	-				-0.2
3,334,582	-				+0.5
3,334,582	-				+1.2
3,334,632	+				+1.6
3,334,632	+				+0.3
3,334,886	+		DZA65_RS15385	0.18	+1.5
3,334,886	+		DZA65_RS15385	0.18	-1.7
3,334,887	-		DZA65_RS15385	0.18	-2.1
3,334,905	+		DZA65_RS15385	0.19	-0.2
3,334,906	-		DZA65_RS15385	0.20	+0.4
3,334,906	-		DZA65_RS15385	0.20	+0.8
3,334,906	-		DZA65_RS15385	0.20	+1.8
3,334,906	-		DZA65_RS15385	0.20	+0.9
3,334,906	-		DZA65_RS15385	0.20	-0.9
3,334,906	-		DZA65_RS15385	0.20	-0.5
3,334,918	+		DZA65_RS15385	0.20	-0.5
3,334,919	-		DZA65_RS15385	0.20	+0.9
3,334,937	+		DZA65_RS15385	0.22	-1.7
3,334,938	-		DZA65_RS15385	0.22	+1.3
3,334,938	-		DZA65_RS15385	0.22	+0.3
3,334,938	-		DZA65_RS15385	0.22	+0.3
3,334,993	-		DZA65_RS15385	0.26	-0.5
3,335,146	+		DZA65_RS15385	0.37	-0.7
3,335,146	+		DZA65_RS15385	0.37	-2.5
3,335,146	+		DZA65_RS15385	0.37	-1.0
3,335,146	+		DZA65_RS15385	0.37	-0.7
3,335,146	+		DZA65_RS15385	0.37	+0.8
3,335,146	+		DZA65_RS15385	0.37	-0.8
3,335,146	+		DZA65_RS15385	0.37	-1.4
3,335,146	+		DZA65_RS15385	0.37	-0.2
3,335,146	+		DZA65_RS15385	0.37	+0.0
3,335,146	+		DZA65_RS15385	0.37	-0.5
3,335,146	+		DZA65_RS15385	0.37	-0.3
3,335,146	+		DZA65_RS15385	0.37	+0.5
3,335,147	-		DZA65_RS15385	0.37	+0.3
3,335,147	-		DZA65_RS15385	0.37	+0.1
3,335,147	-		DZA65_RS15385	0.37	-0.3
3,335,147	-		DZA65_RS15385	0.37	+0.8
3,335,147	-		DZA65_RS15385	0.37	-0.3
3,335,147	-		DZA65_RS15385	0.37	-0.3
3,335,170	+		DZA65_RS15385	0.39	+0.8
3,335,257	+		DZA65_RS15385	0.45	-2.2
3,335,257	+		DZA65_RS15385	0.45	-0.0
3,335,257	+		DZA65_RS15385	0.45	-2.3
3,335,257	+		DZA65_RS15385	0.45	+0.2
3,335,257	+		DZA65_RS15385	0.45	-1.5
3,335,258	-		DZA65_RS15385	0.45	+0.3
3,335,258	-		DZA65_RS15385	0.45	+1.3
3,335,323	+		DZA65_RS15385	0.49	-0.2
3,335,323	+		DZA65_RS15385	0.49	+0.2
3,335,324	-		DZA65_RS15385	0.50	+1.1
3,335,324	-		DZA65_RS15385	0.50	-0.0
3,335,325	+		DZA65_RS15385	0.50	+0.8
3,335,325	+		DZA65_RS15385	0.50	-0.6
3,335,326	-		DZA65_RS15385	0.50	+0.3
3,335,770	-		DZA65_RS15385	0.82	+0.8
3,335,770	-		DZA65_RS15385	0.82	+0.3
3,335,770	-		DZA65_RS15385	0.82	+0.9
3,335,772	+		DZA65_RS15385	0.82	-2.2
3,335,772	+		DZA65_RS15385	0.82	+0.4
3,335,772	+		DZA65_RS15385	0.82	-0.3
3,335,773	-		DZA65_RS15385	0.82	-1.3
3,335,773	-		DZA65_RS15385	0.82	-0.5
3,335,773	-		DZA65_RS15385	0.82	+1.9
3,335,773	-		DZA65_RS15385	0.82	-0.5
3,335,894	-				+0.1
3,335,901	+				-0.2
3,335,901	+				+0.1
3,335,902	-				+1.3
3,335,934	+				-1.3
3,335,934	+				-0.0
3,335,985	+				+0.1
3,335,985	+				-1.3
3,335,986	-				+0.4
3,335,986	-				+0.1
3,336,030	-				+0.1
3,336,108	+		DZA65_RS15390	0.14	-1.5
3,336,108	+		DZA65_RS15390	0.14	-0.3
3,336,108	+		DZA65_RS15390	0.14	+0.6
3,336,108	+		DZA65_RS15390	0.14	+0.7
3,336,109	-		DZA65_RS15390	0.14	+2.0
3,336,109	-		DZA65_RS15390	0.14	+1.4
3,336,109	-		DZA65_RS15390	0.14	+1.0
3,336,109	-		DZA65_RS15390	0.14	-3.3
3,336,109	-		DZA65_RS15390	0.14	-2.5
3,336,109	-		DZA65_RS15390	0.14	-0.5
3,336,109	-		DZA65_RS15390	0.14	+0.4
3,336,109	-		DZA65_RS15390	0.14	-1.0
3,336,112	+		DZA65_RS15390	0.15	-1.3
3,336,112	+		DZA65_RS15390	0.15	-0.5
3,336,112	+		DZA65_RS15390	0.15	-0.1
3,336,112	+		DZA65_RS15390	0.15	+0.8
3,336,112	+		DZA65_RS15390	0.15	-0.4
3,336,112	+		DZA65_RS15390	0.15	+0.4
3,336,112	+		DZA65_RS15390	0.15	-1.2
3,336,112	+		DZA65_RS15390	0.15	+0.7
3,336,112	+		DZA65_RS15390	0.15	-0.0
3,336,113	-		DZA65_RS15390	0.15	+1.7
3,336,113	-		DZA65_RS15390	0.15	-1.3
3,336,113	-		DZA65_RS15390	0.15	-2.5
3,336,113	-		DZA65_RS15390	0.15	-1.2
3,336,113	-		DZA65_RS15390	0.15	+1.1
3,336,113	-		DZA65_RS15390	0.15	-0.9
3,336,113	-		DZA65_RS15390	0.15	-0.1
3,336,113	-		DZA65_RS15390	0.15	-1.3
3,336,172	+		DZA65_RS15390	0.24	+0.8
3,336,172	+		DZA65_RS15390	0.24	+1.5
3,336,173	-		DZA65_RS15390	0.24	+0.5
3,336,212	+		DZA65_RS15390	0.30	+1.3
3,336,213	-		DZA65_RS15390	0.30	+0.1
3,336,213	-		DZA65_RS15390	0.30	-0.1
3,336,272	-		DZA65_RS15390	0.39	-1.3
3,336,318	+		DZA65_RS15390	0.45	-0.2
3,336,318	+		DZA65_RS15390	0.45	-0.0
3,336,318	+		DZA65_RS15390	0.45	+1.5
3,336,318	+		DZA65_RS15390	0.45	-0.4
3,336,319	-		DZA65_RS15390	0.45	+0.1
3,336,319	-		DZA65_RS15390	0.45	+0.5
3,336,319	-		DZA65_RS15390	0.45	+0.1
3,336,319	-		DZA65_RS15390	0.45	-0.1
3,336,394	+		DZA65_RS15390	0.57	+0.3
3,336,394	+		DZA65_RS15390	0.57	-0.7
3,336,395	-		DZA65_RS15390	0.57	-0.2
3,336,395	-		DZA65_RS15390	0.57	-0.3
3,336,413	+		DZA65_RS15390	0.59	-0.3
3,336,413	+		DZA65_RS15390	0.59	-0.5
3,336,460	-		DZA65_RS15390	0.66	+1.1
3,336,485	+		DZA65_RS15390	0.70	-0.5
3,336,531	+		DZA65_RS15390	0.77	+0.6
3,336,531	+		DZA65_RS15390	0.77	+0.7
3,336,531	+		DZA65_RS15390	0.77	+0.8
3,336,531	+		DZA65_RS15390	0.77	-0.7
3,336,531	+		DZA65_RS15390	0.77	-0.9
3,336,531	+		DZA65_RS15390	0.77	+0.1
3,336,531	+		DZA65_RS15390	0.77	+0.1
3,336,531	+		DZA65_RS15390	0.77	-1.2
3,336,532	-		DZA65_RS15390	0.77	+0.6
3,336,532	-		DZA65_RS15390	0.77	-0.4
3,336,532	-				+1.3
3,336,532	-		DZA65_RS15390	0.77	+0.3
3,336,532	-		DZA65_RS15390	0.77	+0.5
3,336,532	-		DZA65_RS15390	0.77	+0.7
3,336,532	-		DZA65_RS15390	0.77	+0.7
3,336,532	-		DZA65_RS15390	0.77	-0.7
3,336,532	-		DZA65_RS15390	0.77	-0.3
3,336,532	-		DZA65_RS15390	0.77	-0.0
3,336,532	-		DZA65_RS15390	0.77	-0.0
3,336,553	+		DZA65_RS15390	0.80	-0.6
3,336,553	+		DZA65_RS15390	0.80	+0.4
3,336,554	-		DZA65_RS15390	0.80	-1.2
3,336,554	-		DZA65_RS15390	0.80	+0.5
3,336,554	-		DZA65_RS15390	0.80	+1.8
3,336,554	-		DZA65_RS15390	0.80	+0.5
3,336,554	-		DZA65_RS15390	0.80	+0.3
3,336,554	-		DZA65_RS15390	0.80	+0.4
3,336,554	-		DZA65_RS15390	0.80	+1.1
3,336,733	+				+0.1
3,336,769	+				-1.1
3,336,770	-				+0.3
3,336,795	-				+0.1
3,336,816	+				-1.3
3,336,829	-				+1.3
3,336,829	-				-0.7
3,336,869	+				-0.7
3,337,015	+		DZA65_RS15395	0.13	+0.3
3,337,016	-		DZA65_RS15395	0.13	-1.3
3,337,022	+		DZA65_RS15395	0.14	-0.0
3,337,023	-		DZA65_RS15395	0.14	+3.0
3,337,023	-		DZA65_RS15395	0.14	+0.3