Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15265

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,311,402	+		DZA65_RS15255	0.87	-1.0
3,311,402	+		DZA65_RS15255	0.87	-0.5
3,311,403	-		DZA65_RS15255	0.87	-0.3
3,311,403	-		DZA65_RS15255	0.87	+0.3
3,311,444	+				-0.9
3,311,445	-				-1.1
3,311,445	-				+0.4
3,311,445	-				-0.2
3,311,445	-				+0.3
3,311,476	+				-1.0
3,311,476	+				+0.3
3,311,476	+				+0.3
3,311,480	+				-1.0
3,311,480	+				+0.7
3,311,480	+				-0.9
3,311,481	-				+1.0
3,311,582	-				-0.6
3,311,633	+				-0.2
3,311,664	+		DZA65_RS15260	0.10	+1.0
3,311,664	+		DZA65_RS15260	0.10	-0.1
3,311,664	+		DZA65_RS15260	0.10	-1.0
3,311,665	-		DZA65_RS15260	0.10	-1.2
3,311,665	-		DZA65_RS15260	0.10	-0.7
3,311,665	-		DZA65_RS15260	0.10	+0.1
3,311,665	-		DZA65_RS15260	0.10	+0.8
3,311,665	-		DZA65_RS15260	0.10	+0.3
3,311,665	-		DZA65_RS15260	0.10	+0.5
3,311,665	-		DZA65_RS15260	0.10	+0.4
3,311,665	-		DZA65_RS15260	0.10	+2.1
3,311,824	+		DZA65_RS15260	0.34	-2.1
3,311,825	-		DZA65_RS15260	0.35	-0.5
3,311,825	-		DZA65_RS15260	0.35	-1.0
3,311,825	-		DZA65_RS15260	0.35	+0.2
3,311,867	+		DZA65_RS15260	0.41	+0.3
3,312,003	-		DZA65_RS15260	0.62	-0.4
3,312,128	+		DZA65_RS15260	0.81	-0.7
3,312,128	+		DZA65_RS15260	0.81	-0.3
3,312,129	-		DZA65_RS15260	0.81	+0.9
3,312,129	-		DZA65_RS15260	0.81	+0.8
3,312,156	-		DZA65_RS15260	0.85	+0.0
3,312,193	-				-1.2
3,312,245	+				-1.7
3,312,246	-				-0.1
3,312,270	+				-0.2
3,312,270	+				-0.5
3,312,271	-				+0.4
3,312,274	+				+0.6
3,312,274	+				-0.8
3,312,274	+				+1.1
3,312,274	+				-0.3
3,312,274	+				+0.3
3,312,274	+				+0.5
3,312,274	+				+1.3
3,312,275	-				+1.5
3,312,275	-				+0.6
3,312,275	-				-0.6
3,312,275	-				+0.3
3,312,278	+				+0.3
3,312,278	+				-2.5
3,312,278	+				-2.3
3,312,279	-				+2.7
3,312,282	+				-1.1
3,312,282	+				+0.8
3,312,282	+				-1.1
3,312,282	+				+0.8
3,312,283	-				+2.7
3,312,288	-				-0.4
3,312,295	-				-0.5
3,312,298	+				-1.7
3,312,298	+				-1.7
3,312,298	+				-0.7
3,312,298	+				+1.2
3,312,298	+				-0.1
3,312,298	+				+0.5
3,312,299	-				+0.8
3,312,299	-				-0.5
3,312,299	-				-0.5
3,312,299	-				-0.1
3,312,299	-				-0.2
3,312,299	-				+0.1
3,312,299	-				+0.1
3,312,299	-				-1.7
3,312,304	-				+0.3
3,312,310	+				-1.3
3,312,310	+				+0.4
3,312,310	+				-0.1
3,312,311	-				-0.1
3,312,311	-				-0.2
3,312,314	+				+0.7
3,312,314	+				-0.7
3,312,314	+				-0.0
3,312,314	+				-0.1
3,312,315	-				+0.1
3,312,315	-				+0.2
3,312,315	-				+0.3
3,312,319	+				-2.1
3,312,351	+				-1.5
3,312,352	-				+1.7
3,312,352	-				-0.6
3,312,352	-				+0.3
3,312,397	-				+0.1
3,312,397	-				+0.3
3,312,430	+		DZA65_RS15265	0.16	+1.4
3,312,431	-		DZA65_RS15265	0.16	+0.1
3,312,431	-		DZA65_RS15265	0.16	-2.9
3,312,431	-		DZA65_RS15265	0.16	+0.5
3,312,431	-		DZA65_RS15265	0.16	-0.1
3,312,431	-		DZA65_RS15265	0.16	+0.4
3,312,438	+		DZA65_RS15265	0.17	-2.5
3,312,438	+		DZA65_RS15265	0.17	-0.3
3,312,438	+		DZA65_RS15265	0.17	+0.8
3,312,438	+		DZA65_RS15265	0.17	+0.3
3,312,438	+		DZA65_RS15265	0.17	-0.2
3,312,438	+		DZA65_RS15265	0.17	-0.2
3,312,438	+		DZA65_RS15265	0.17	-1.2
3,312,438	+		DZA65_RS15265	0.17	+0.3
3,312,438	+		DZA65_RS15265	0.17	+1.0
3,312,438	+		DZA65_RS15265	0.17	+2.3
3,312,438	+		DZA65_RS15265	0.17	-0.1
3,312,438	+		DZA65_RS15265	0.17	+0.6
3,312,439	-		DZA65_RS15265	0.17	+1.6
3,312,439	-		DZA65_RS15265	0.17	-0.1
3,312,439	-		DZA65_RS15265	0.17	+1.3
3,312,439	-		DZA65_RS15265	0.17	-0.7
3,312,439	-		DZA65_RS15265	0.17	+0.5
3,312,439	-		DZA65_RS15265	0.17	-1.0
3,312,439	-		DZA65_RS15265	0.17	+1.2
3,312,439	-		DZA65_RS15265	0.17	-0.7
3,312,439	-		DZA65_RS15265	0.17	-1.1
3,312,466	+		DZA65_RS15265	0.23	+0.8
3,312,467	-		DZA65_RS15265	0.23	-1.2
3,312,515	+		DZA65_RS15265	0.33	+0.6
3,312,515	+		DZA65_RS15265	0.33	-0.5
3,312,515	+		DZA65_RS15265	0.33	+0.9
3,312,515	+		DZA65_RS15265	0.33	+0.3
3,312,515	+		DZA65_RS15265	0.33	+0.0
3,312,515	+		DZA65_RS15265	0.33	+0.3
3,312,515	+		DZA65_RS15265	0.33	-1.4
3,312,515	+		DZA65_RS15265	0.33	-0.5
3,312,515	+		DZA65_RS15265	0.33	-0.2
3,312,516	-		DZA65_RS15265	0.33	+0.5
3,312,516	-		DZA65_RS15265	0.33	+0.7
3,312,516	-		DZA65_RS15265	0.33	+0.0
3,312,516	-		DZA65_RS15265	0.33	+1.3
3,312,516	-		DZA65_RS15265	0.33	-2.3
3,312,531	+		DZA65_RS15265	0.36	+0.4
3,312,531	+		DZA65_RS15265	0.36	+0.3
3,312,531	+		DZA65_RS15265	0.36	+0.3
3,312,531	+		DZA65_RS15265	0.36	+0.3
3,312,531	+		DZA65_RS15265	0.36	+0.9
3,312,531	+		DZA65_RS15265	0.36	-0.7
3,312,532	-		DZA65_RS15265	0.36	-0.7
3,312,532	-		DZA65_RS15265	0.36	+0.3
3,312,532	-		DZA65_RS15265	0.36	+0.4
3,312,532	-		DZA65_RS15265	0.36	-0.0
3,312,532	-		DZA65_RS15265	0.36	-0.2
3,312,541	-		DZA65_RS15265	0.38	-0.5
3,312,596	-		DZA65_RS15265	0.49	+0.3
3,312,659	-		DZA65_RS15265	0.62	+0.5
3,312,730	-		DZA65_RS15265	0.76	-1.7
3,312,745	+		DZA65_RS15265	0.79	+0.6
3,312,745	+		DZA65_RS15265	0.79	-1.9
3,312,745	+		DZA65_RS15265	0.79	-0.4
3,312,746	-		DZA65_RS15265	0.79	+0.6
3,312,820	+				-1.7
3,312,820	+				+0.3
3,312,821	-				+0.7
3,312,821	-				+0.7
3,312,835	+				+0.4
3,312,836	-				-0.3
3,312,850	+				+0.3
3,312,967	+				-0.3
3,312,980	+				+0.7
3,313,054	+		DZA65_RS15270	0.15	+1.8
3,313,054	+		DZA65_RS15270	0.15	-0.7
3,313,055	-		DZA65_RS15270	0.16	+0.7
3,313,055	-		DZA65_RS15270	0.16	+2.6
3,313,106	+				-1.7
3,313,131	+		DZA65_RS15270	0.32	+0.0
3,313,131	+		DZA65_RS15270	0.32	-0.1
3,313,132	-		DZA65_RS15270	0.32	+0.5
3,313,132	-		DZA65_RS15270	0.32	-0.2
3,313,132	-		DZA65_RS15270	0.32	-0.5
3,313,132	-		DZA65_RS15270	0.32	+0.4
3,313,132	-		DZA65_RS15270	0.32	+1.4
3,313,134	+		DZA65_RS15270	0.33	+0.1
3,313,135	-		DZA65_RS15270	0.33	+1.8
3,313,272	+		DZA65_RS15270	0.63	+0.8
3,313,272	+		DZA65_RS15270	0.63	-0.1
3,313,272	+		DZA65_RS15270	0.63	-1.3
3,313,273	-		DZA65_RS15270	0.63	-0.7
3,313,273	-		DZA65_RS15270	0.63	-1.3
3,313,273	-		DZA65_RS15270	0.63	+0.2
3,313,338	+		DZA65_RS15270	0.78	-0.3
3,313,339	-		DZA65_RS15270	0.78	+0.7
3,313,376	+		DZA65_RS15270	0.86	-1.9
3,313,376	+		DZA65_RS15270	0.86	-0.4
3,313,377	-		DZA65_RS15270	0.86	+0.3
3,313,377	-		DZA65_RS15270	0.86	+1.2
3,313,377	-		DZA65_RS15270	0.86	+0.6
3,313,378	+		DZA65_RS15270	0.86	-1.3
3,313,378	+		DZA65_RS15270	0.86	+1.0
3,313,378	+		DZA65_RS15270	0.86	+0.9
3,313,378	+		DZA65_RS15270	0.86	+0.3
3,313,378	+		DZA65_RS15270	0.86	+0.7
3,313,378	+		DZA65_RS15270	0.86	-1.1
3,313,378	+		DZA65_RS15270	0.86	-1.0
3,313,378	+		DZA65_RS15270	0.86	-0.3
3,313,378	+		DZA65_RS15270	0.86	-0.2
3,313,378	+		DZA65_RS15270	0.86	+0.3
3,313,378	+		DZA65_RS15270	0.86	+1.3
3,313,379	-		DZA65_RS15270	0.87	-0.3
3,313,379	-		DZA65_RS15270	0.87	-0.0
3,313,379	-		DZA65_RS15270	0.87	-0.3
3,313,379	-		DZA65_RS15270	0.87	+0.3
3,313,379	-		DZA65_RS15270	0.87	+0.7
3,313,379	-		DZA65_RS15270	0.87	+1.2
3,313,379	-		DZA65_RS15270	0.87	+1.3
3,313,379	-		DZA65_RS15270	0.87	-0.9
3,313,379	-		DZA65_RS15270	0.87	-1.2
3,313,379	-		DZA65_RS15270	0.87	-0.3
3,313,379	-		DZA65_RS15270	0.87	+0.1
3,313,404	+				+0.4
3,313,404	+				-0.3
3,313,405	-				+0.5
3,313,405	-				+0.3
3,313,405	-				+0.8
3,313,526	+				+1.0
3,313,547	+				-2.2
3,313,547	+				+0.3
3,313,605	+		DZA65_RS15275	0.24	-0.6
3,313,746	+		DZA65_RS15275	0.82	-0.7
3,313,746	+		DZA65_RS15275	0.82	+0.2
3,313,746	+		DZA65_RS15275	0.82	+0.3
3,313,746	+		DZA65_RS15275	0.82	-0.2
3,313,746	+		DZA65_RS15275	0.82	-1.7
3,313,746	+		DZA65_RS15275	0.82	-1.0
3,313,747	-		DZA65_RS15275	0.83	-0.5
3,313,747	-		DZA65_RS15275	0.83	-2.1
3,313,747	-		DZA65_RS15275	0.83	-2.3
3,313,747	-		DZA65_RS15275	0.83	+0.3
3,313,747	-		DZA65_RS15275	0.83	-2.5
3,313,818	-				+0.1
3,313,823	+				-1.7
3,313,823	+				-1.9
3,313,823	+				+0.5
3,313,823	+				-0.8
3,313,823	+				+0.3
3,313,824	-				-1.0
3,313,824	-				-2.4
3,313,824	-				+0.5
3,313,824	-				-0.6