Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14705

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,197,117	+		DZA65_RS14700	0.43	-0.3
3,197,154	-		DZA65_RS14700	0.45	+1.6
3,197,170	+		DZA65_RS14700	0.46	-0.4
3,197,224	+		DZA65_RS14700	0.49	-1.7
3,197,224	+		DZA65_RS14700	0.49	-0.1
3,197,225	-		DZA65_RS14700	0.49	+1.0
3,197,309	+		DZA65_RS14700	0.54	-0.9
3,197,309	+		DZA65_RS14700	0.54	-0.1
3,197,309	+		DZA65_RS14700	0.54	+0.3
3,197,309	+		DZA65_RS14700	0.54	+0.6
3,197,310	-		DZA65_RS14700	0.54	-1.2
3,197,310	-		DZA65_RS14700	0.54	+1.0
3,197,310	-		DZA65_RS14700	0.54	+0.5
3,197,310	-		DZA65_RS14700	0.54	-0.9
3,197,310	-		DZA65_RS14700	0.54	+0.6
3,197,323	+		DZA65_RS14700	0.55	+1.1
3,197,323	+		DZA65_RS14700	0.55	+0.5
3,197,323	+		DZA65_RS14700	0.55	+0.1
3,197,323	+		DZA65_RS14700	0.55	+0.0
3,197,323	+		DZA65_RS14700	0.55	-2.7
3,197,323	+		DZA65_RS14700	0.55	-0.1
3,197,323	+		DZA65_RS14700	0.55	+0.8
3,197,323	+		DZA65_RS14700	0.55	+0.8
3,197,324	-		DZA65_RS14700	0.55	+0.1
3,197,324	-		DZA65_RS14700	0.55	+0.9
3,197,324	-		DZA65_RS14700	0.55	+1.1
3,197,324	-		DZA65_RS14700	0.55	+0.6
3,197,324	-		DZA65_RS14700	0.55	-2.3
3,197,324	-		DZA65_RS14700	0.55	-0.4
3,197,324	-		DZA65_RS14700	0.55	+0.9
3,197,324	-		DZA65_RS14700	0.55	+0.3
3,197,324	-		DZA65_RS14700	0.55	-0.9
3,197,324	-		DZA65_RS14700	0.55	-1.1
3,197,324	-				-1.0
3,197,327	+		DZA65_RS14700	0.55	-1.9
3,197,327	+		DZA65_RS14700	0.55	+0.9
3,197,327	+		DZA65_RS14700	0.55	-1.0
3,197,328	-		DZA65_RS14700	0.55	+0.1
3,197,328	-		DZA65_RS14700	0.55	-1.0
3,197,384	+		DZA65_RS14700	0.58	-0.2
3,197,384	+		DZA65_RS14700	0.58	-0.9
3,197,385	-		DZA65_RS14700	0.58	-0.6
3,197,385	-		DZA65_RS14700	0.58	+0.5
3,197,486	+		DZA65_RS14700	0.64	+0.3
3,197,486	+		DZA65_RS14700	0.64	-0.3
3,197,486	+		DZA65_RS14700	0.64	-0.9
3,197,486	+		DZA65_RS14700	0.64	+0.3
3,197,486	+		DZA65_RS14700	0.64	-0.0
3,197,486	+		DZA65_RS14700	0.64	+0.6
3,197,487	-		DZA65_RS14700	0.64	+0.6
3,197,491	+		DZA65_RS14700	0.64	+0.3
3,197,492	-		DZA65_RS14700	0.64	+0.9
3,197,492	-		DZA65_RS14700	0.64	+0.9
3,197,528	+		DZA65_RS14700	0.66	+0.9
3,197,528	+		DZA65_RS14700	0.66	+1.9
3,197,528	+		DZA65_RS14700	0.66	-0.2
3,197,528	+		DZA65_RS14700	0.66	-0.4
3,197,528	+		DZA65_RS14700	0.66	-1.4
3,197,529	-		DZA65_RS14700	0.67	+0.7
3,197,529	-		DZA65_RS14700	0.67	-0.4
3,197,529	-		DZA65_RS14700	0.67	+1.0
3,197,529	-		DZA65_RS14700	0.67	+0.4
3,197,562	+		DZA65_RS14700	0.68	+0.8
3,197,637	-		DZA65_RS14700	0.73	-0.7
3,197,798	-		DZA65_RS14700	0.82	-0.5
3,197,798	-		DZA65_RS14700	0.82	+0.3
3,197,876	+		DZA65_RS14700	0.86	-0.0
3,197,876	+		DZA65_RS14700	0.86	-0.3
3,197,876	+		DZA65_RS14700	0.86	+0.3
3,197,876	+		DZA65_RS14700	0.86	-3.2
3,197,876	+		DZA65_RS14700	0.86	-0.7
3,197,876	+		DZA65_RS14700	0.86	+0.8
3,197,876	+		DZA65_RS14700	0.86	+0.8
3,197,876	+		DZA65_RS14700	0.86	+1.9
3,197,876	+		DZA65_RS14700	0.86	+0.2
3,197,876	+		DZA65_RS14700	0.86	+3.1
3,197,876	+		DZA65_RS14700	0.86	-2.0
3,197,877	-		DZA65_RS14700	0.86	+2.2
3,197,877	-				+1.3
3,197,877	-		DZA65_RS14700	0.86	-0.3
3,197,877	-		DZA65_RS14700	0.86	-0.9
3,197,877	-		DZA65_RS14700	0.86	-0.0
3,197,879	+		DZA65_RS14700	0.86	+0.2
3,197,879	+		DZA65_RS14700	0.86	-1.0
3,197,879	+		DZA65_RS14700	0.86	-0.3
3,197,879	+		DZA65_RS14700	0.86	-1.0
3,197,880	-		DZA65_RS14700	0.86	+1.0
3,197,880	-		DZA65_RS14700	0.86	+1.5
3,197,933	+		DZA65_RS14700	0.89	-0.3
3,197,935	+		DZA65_RS14700	0.90	-0.6
3,197,935	+		DZA65_RS14700	0.90	+0.1
3,197,935	+		DZA65_RS14700	0.90	-1.0
3,197,935	+		DZA65_RS14700	0.90	-0.5
3,197,936	-		DZA65_RS14700	0.90	-0.4
3,197,936	-		DZA65_RS14700	0.90	+0.0
3,197,936	-		DZA65_RS14700	0.90	+0.5
3,197,936	-		DZA65_RS14700	0.90	+0.6
3,197,936	-		DZA65_RS14700	0.90	+1.5
3,198,063	-				-0.6
3,198,063	-				-1.3
3,198,069	-				-0.5
3,198,114	-				-0.1
3,198,228	+				-0.9
3,198,393	+		DZA65_RS14705	0.18	-0.4
3,198,393	+		DZA65_RS14705	0.18	-1.8
3,198,393	+		DZA65_RS14705	0.18	-2.7
3,198,393	+		DZA65_RS14705	0.18	-0.3
3,198,393	+		DZA65_RS14705	0.18	-1.2
3,198,394	-		DZA65_RS14705	0.18	+0.7
3,198,394	-		DZA65_RS14705	0.18	+0.3
3,198,394	-		DZA65_RS14705	0.18	-2.9
3,198,394	-		DZA65_RS14705	0.18	-0.7
3,198,469	-		DZA65_RS14705	0.22	-0.5
3,198,483	+		DZA65_RS14705	0.23	+1.0
3,198,483	+		DZA65_RS14705	0.23	-0.7
3,198,483	+		DZA65_RS14705	0.23	+0.4
3,198,483	+		DZA65_RS14705	0.23	+1.0
3,198,484	-		DZA65_RS14705	0.23	-0.5
3,198,625	-		DZA65_RS14705	0.32	-2.2
3,198,645	+		DZA65_RS14705	0.33	+1.0
3,198,654	+		DZA65_RS14705	0.34	-0.7
3,198,654	+		DZA65_RS14705	0.34	+0.8
3,198,655	-		DZA65_RS14705	0.34	+0.3
3,198,655	-		DZA65_RS14705	0.34	-0.7
3,198,655	-		DZA65_RS14705	0.34	-0.1
3,198,926	-		DZA65_RS14705	0.51	+1.3
3,198,926	-		DZA65_RS14705	0.51	+1.0
3,198,926	-		DZA65_RS14705	0.51	-0.8
3,199,014	+		DZA65_RS14705	0.56	+0.1
3,199,014	+		DZA65_RS14705	0.56	+0.1
3,199,014	+		DZA65_RS14705	0.56	-1.6
3,199,014	+		DZA65_RS14705	0.56	-0.8
3,199,014	+		DZA65_RS14705	0.56	-0.5
3,199,014	+		DZA65_RS14705	0.56	-2.3
3,199,014	+		DZA65_RS14705	0.56	+1.0
3,199,014	+		DZA65_RS14705	0.56	+0.5
3,199,014	+		DZA65_RS14705	0.56	-1.5
3,199,015	-		DZA65_RS14705	0.56	+0.6
3,199,015	-		DZA65_RS14705	0.56	+0.9
3,199,015	-		DZA65_RS14705	0.56	-0.5
3,199,015	-		DZA65_RS14705	0.56	+0.2
3,199,019	+		DZA65_RS14705	0.57	+0.3
3,199,083	+		DZA65_RS14705	0.61	-0.1
3,199,083	+		DZA65_RS14705	0.61	-2.7
3,199,083	+		DZA65_RS14705	0.61	+0.7
3,199,084	-		DZA65_RS14705	0.61	+0.6
3,199,084	-		DZA65_RS14705	0.61	-0.1
3,199,084	-		DZA65_RS14705	0.61	-0.3
3,199,084	-		DZA65_RS14705	0.61	+0.3
3,199,084	-		DZA65_RS14705	0.61	-2.5
3,199,084	-		DZA65_RS14705	0.61	-0.6
3,199,108	+		DZA65_RS14705	0.62	+0.3
3,199,108	+		DZA65_RS14705	0.62	-0.6
3,199,108	+		DZA65_RS14705	0.62	-2.0
3,199,169	+		DZA65_RS14705	0.66	+0.0
3,199,190	+		DZA65_RS14705	0.67	+0.8
3,199,190	+		DZA65_RS14705	0.67	-0.9
3,199,190	+		DZA65_RS14705	0.67	-1.7
3,199,190	+		DZA65_RS14705	0.67	-1.0
3,199,190	+		DZA65_RS14705	0.67	-0.6
3,199,191	-		DZA65_RS14705	0.67	+0.3
3,199,409	+		DZA65_RS14705	0.81	+0.3
3,199,410	-		DZA65_RS14705	0.81	-0.2
3,199,410	-		DZA65_RS14705	0.81	-2.0
3,199,410	-		DZA65_RS14705	0.81	-0.7
3,199,410	-		DZA65_RS14705	0.81	+0.6
3,199,437	+		DZA65_RS14705	0.83	+0.3
3,199,438	-		DZA65_RS14705	0.83	+0.0
3,199,473	+		DZA65_RS14705	0.85	-0.5
3,199,486	-		DZA65_RS14705	0.86	+0.2
3,199,512	+		DZA65_RS14705	0.88	+0.5
3,199,512	+		DZA65_RS14705	0.88	+0.1
3,199,576	+				-0.2
3,199,577	-				-1.7
3,199,592	+				+0.1
3,199,592	+				-0.7
3,199,592	+				-0.2
3,199,592	+				-1.5
3,199,593	-				+0.6
3,199,593	-				+0.1
3,199,593	-				-0.3
3,199,593	-				+0.4
3,199,593	-				+1.0
3,199,593	-				-0.3
3,199,602	+				-1.3
3,199,630	-				+0.6
3,199,651	-				+0.4
3,199,691	-				-0.0
3,199,748	+				-2.7
3,199,748	+				+1.1
3,199,748	+				+1.0
3,199,748	+				-0.3
3,199,749	-				-0.7
3,199,749	-				-2.0
3,199,749	-				+0.7
3,199,749	-				-1.3
3,199,843	-				+0.0
3,199,844	+				-0.8
3,199,845	-				-3.0
3,199,847	-				-0.6
3,200,020	-				+0.3
3,200,046	-				+0.0
3,200,046	-				+1.0
3,200,050	-				-0.2
3,200,050	-				+0.8
3,200,050	-				-0.9
3,200,050	-				+1.3
3,200,050	-				-0.6
3,200,055	+				-0.2
3,200,055	+				-2.0
3,200,056	-				-0.9
3,200,056	-				-0.9
3,200,180	+				+0.9
3,200,192	+				+1.1
3,200,192	+				-0.1
3,200,192	+				+0.8
3,200,192	+				-0.2
3,200,312	+		DZA65_RS14710	0.37	-0.0
3,200,312	+		DZA65_RS14710	0.37	+0.0
3,200,312	+		DZA65_RS14710	0.37	-0.9
3,200,313	-		DZA65_RS14710	0.37	-0.1
3,200,313	-		DZA65_RS14710	0.37	+0.3
3,200,313	-		DZA65_RS14710	0.37	-2.0
3,200,358	-		DZA65_RS14710	0.52	-0.4
3,200,403	-		DZA65_RS14710	0.67	-0.1
3,200,521	+				+0.7
3,200,522	-				-2.9
3,200,592	+		DZA65_RS14715	0.11	-2.0
3,200,592	+		DZA65_RS14715	0.11	-0.9
3,200,592	+		DZA65_RS14715	0.11	+0.3
3,200,592	+		DZA65_RS14715	0.11	+0.1
3,200,592	+		DZA65_RS14715	0.11	-0.7
3,200,592	+		DZA65_RS14715	0.11	-0.3
3,200,592	+		DZA65_RS14715	0.11	-0.7
3,200,592	+		DZA65_RS14715	0.11	-0.9
3,200,593	-		DZA65_RS14715	0.11	-0.4
3,200,593	-		DZA65_RS14715	0.11	-0.1
3,200,593	-		DZA65_RS14715	0.11	-0.3
3,200,593	-		DZA65_RS14715	0.11	+0.6
3,200,593	-		DZA65_RS14715	0.11	+0.3
3,200,595	+		DZA65_RS14715	0.11	+0.5
3,200,595	+		DZA65_RS14715	0.11	-1.3
3,200,595	+		DZA65_RS14715	0.11	+0.3
3,200,595	+		DZA65_RS14715	0.11	-1.7
3,200,595	+		DZA65_RS14715	0.11	-0.1
3,200,596	-		DZA65_RS14715	0.12	+0.1
3,200,596	-		DZA65_RS14715	0.12	-0.1
3,200,596	-		DZA65_RS14715	0.12	-0.3
3,200,596	-		DZA65_RS14715	0.12	-0.0