Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,979,460	+		DZA65_RS13865	0.79	+0.9
2,979,460	+		DZA65_RS13865	0.79	-0.6
2,979,460	+		DZA65_RS13865	0.79	-1.0
2,979,461	-		DZA65_RS13865	0.79	+0.0
2,979,461	-		DZA65_RS13865	0.79	+0.0
2,979,534	-		DZA65_RS13865	0.81	-3.4
2,979,589	+		DZA65_RS13865	0.83	-1.7
2,979,589	+		DZA65_RS13865	0.83	+1.5
2,979,590	-		DZA65_RS13865	0.83	-1.0
2,979,590	-		DZA65_RS13865	0.83	-0.6
2,979,590	-		DZA65_RS13865	0.83	+2.4
2,979,697	+		DZA65_RS13865	0.86	+0.3
2,979,706	+		DZA65_RS13865	0.86	+0.6
2,979,706	+		DZA65_RS13865	0.86	-2.5
2,979,706	+		DZA65_RS13865	0.86	-0.7
2,979,706	+		DZA65_RS13865	0.86	-0.6
2,979,706	+		DZA65_RS13865	0.86	-0.4
2,979,706	+		DZA65_RS13865	0.86	+0.6
2,979,706	+		DZA65_RS13865	0.86	+0.8
2,979,706	+		DZA65_RS13865	0.86	+1.6
2,979,707	-		DZA65_RS13865	0.86	-0.0
2,979,707	-		DZA65_RS13865	0.86	-0.9
2,979,707	-		DZA65_RS13865	0.86	-0.5
2,979,707	-				+0.3
2,979,707	-		DZA65_RS13865	0.86	+0.3
2,979,707	-		DZA65_RS13865	0.86	+0.5
2,979,712	+		DZA65_RS13865	0.86	-0.1
2,979,786	-		DZA65_RS13865	0.88	-0.7
2,979,791	+		DZA65_RS13865	0.89	-1.0
2,979,807	-		DZA65_RS13865	0.89	-0.4
2,979,814	+		DZA65_RS13865	0.89	-1.3
2,979,814	+		DZA65_RS13865	0.89	+0.3
2,979,814	+		DZA65_RS13865	0.89	-0.1
2,979,814	+		DZA65_RS13865	0.89	-0.1
2,979,815	-				+0.9
2,979,815	-		DZA65_RS13865	0.89	-0.7
2,979,815	-		DZA65_RS13865	0.89	-0.7
2,979,984	+				-1.1
2,979,985	-				-0.1
2,979,985	-				-0.7
2,979,985	-				+0.4
2,980,018	-				+0.0
2,980,018	-				+0.3
2,980,091	+				-0.9
2,980,091	+				-0.5
2,980,091	+				-1.9
2,980,092	-				+0.4
2,980,092	-				+0.3
2,980,093	+				+1.3
2,980,093	+				+0.3
2,980,094	-				-2.0
2,980,094	-				+0.9
2,980,130	+				-1.0
2,980,130	+				-0.7
2,980,130	+				+0.9
2,980,131	-				-0.9
2,980,131	-				-0.4
2,980,131	-				+0.9
2,980,131	-				-1.0
2,980,137	-				-1.7
2,980,175	+				-1.6
2,980,175	+				+0.3
2,980,208	-				-0.7
2,980,234	+				-1.3
2,980,237	+				-1.2
2,980,238	-				-0.1
2,980,238	-				+0.5
2,980,239	+				-3.2
2,980,240	-				+1.3
2,980,240	-				+0.3
2,980,242	-				+1.0
2,980,242	-				-1.3
2,980,242	-				-1.4
2,980,279	+				-0.7
2,980,280	-				-0.5
2,980,281	+				-0.9
2,980,290	+				+0.1
2,980,291	-				+0.1
2,980,303	-				-1.3
2,980,331	+				+0.5
2,980,335	+				+0.3
2,980,345	-				-1.7
2,980,345	-				-0.2
2,980,345	-				+1.6
2,980,345	-				-2.6
2,980,345	-				-1.5
2,980,387	+				-2.0
2,980,419	+				-1.1
2,980,420	-				-1.1
2,980,420	-				-2.7
2,980,477	+				-1.4
2,980,477	+				-1.3
2,980,477	+				-1.7
2,980,513	+		DZA65_RS13870	0.11	-3.0
2,980,513	+		DZA65_RS13870	0.11	-1.4
2,980,513	+		DZA65_RS13870	0.11	-3.0
2,980,513	+		DZA65_RS13870	0.11	-0.9
2,980,513	+		DZA65_RS13870	0.11	-1.4
2,980,514	-		DZA65_RS13870	0.11	-1.7
2,980,514	-		DZA65_RS13870	0.11	-0.7
2,980,517	+		DZA65_RS13870	0.12	-1.0
2,980,517	+		DZA65_RS13870	0.12	-1.7
2,980,517	+		DZA65_RS13870	0.12	-1.3
2,980,518	-		DZA65_RS13870	0.12	+0.3
2,980,518	-		DZA65_RS13870	0.12	-0.0
2,980,552	+		DZA65_RS13870	0.16	-1.0
2,980,552	+		DZA65_RS13870	0.16	-1.4
2,980,552	+		DZA65_RS13870	0.16	-1.1
2,980,552	+		DZA65_RS13870	0.16	-2.5
2,980,552	+		DZA65_RS13870	0.16	-2.0
2,980,552	+		DZA65_RS13870	0.16	-0.7
2,980,553	-		DZA65_RS13870	0.16	-0.7
2,980,553	-		DZA65_RS13870	0.16	+0.7
2,980,666	+		DZA65_RS13870	0.29	+0.3
2,980,667	-		DZA65_RS13870	0.30	+3.1
2,980,690	+		DZA65_RS13870	0.32	-0.8
2,980,690	+		DZA65_RS13870	0.32	-0.7
2,980,691	-		DZA65_RS13870	0.32	-1.0
2,980,691	-		DZA65_RS13870	0.32	-2.3
2,980,705	+		DZA65_RS13870	0.34	-0.9
2,980,705	+		DZA65_RS13870	0.34	-2.6
2,980,705	+		DZA65_RS13870	0.34	-3.4
2,980,705	+		DZA65_RS13870	0.34	+0.5
2,980,705	+		DZA65_RS13870	0.34	-1.3
2,980,706	-		DZA65_RS13870	0.34	+0.7
2,980,706	-		DZA65_RS13870	0.34	+0.9
2,980,706	-		DZA65_RS13870	0.34	+0.6
2,980,706	-		DZA65_RS13870	0.34	-0.0
2,980,706	-		DZA65_RS13870	0.34	+1.3
2,980,706	-		DZA65_RS13870	0.34	+0.0
2,980,706	-		DZA65_RS13870	0.34	+0.1
2,980,709	+		DZA65_RS13870	0.35	-0.9
2,980,709	+		DZA65_RS13870	0.35	-0.3
2,980,709	+		DZA65_RS13870	0.35	-1.5
2,980,709	+		DZA65_RS13870	0.35	-2.3
2,980,709	+		DZA65_RS13870	0.35	-1.3
2,980,709	+		DZA65_RS13870	0.35	+0.9
2,980,710	-		DZA65_RS13870	0.35	-1.1
2,980,862	-		DZA65_RS13870	0.53	-0.6
2,980,936	+		DZA65_RS13870	0.61	-0.0
2,980,937	-		DZA65_RS13870	0.62	-0.5
2,980,945	+		DZA65_RS13870	0.63	-3.2
2,980,945	+		DZA65_RS13870	0.63	-1.3
2,980,948	+		DZA65_RS13870	0.63	-2.7
2,981,048	+		DZA65_RS13870	0.75	-1.3
2,981,048	+		DZA65_RS13870	0.75	-0.4
2,981,048	+		DZA65_RS13870	0.75	-0.1
2,981,049	-		DZA65_RS13870	0.75	+1.0
2,981,105	-		DZA65_RS13870	0.81	-2.3
2,981,153	-		DZA65_RS13870	0.87	-0.3
2,981,153	-		DZA65_RS13870	0.87	+0.1
2,981,236	+				-0.3
2,981,236	+				-1.8
2,981,236	+				-1.0
2,981,236	+				-1.7
2,981,236	+				-3.0
2,981,236	+				+0.7
2,981,236	+				-1.7
2,981,237	-				-0.0
2,981,237	-				-0.7
2,981,237	-				-0.7
2,981,237	-				-1.1
2,981,237	-				-1.2
2,981,237	-				+0.2
2,981,237	-				-0.2
2,981,237	-				-0.6
2,981,237	-				+0.1
2,981,237	-				+0.3
2,981,237	-				+0.1
2,981,239	+				-0.9
2,981,239	+				-1.0
2,981,240	-				+0.6
2,981,240	-				-2.7
2,981,240	-				-2.0
2,981,240	-				+0.7
2,981,240	-				-0.3
2,981,240	-				+0.5
2,981,240	-				-0.7
2,981,240	-				-0.7
2,981,240	-				+0.7
2,981,240	-				+0.3
2,981,242	+				-1.0
2,981,243	-				+0.1
2,981,245	+				-2.3
2,981,245	+				-1.3
2,981,246	-				-1.3
2,981,246	-				-0.0
2,981,246	-				-2.0
2,981,248	+				-4.3
2,981,260	+				-1.8
2,981,260	+				-0.3
2,981,261	-				-0.2
2,981,261	-				-0.5
2,981,264	+				-0.2
2,981,264	+				-1.7
2,981,264	+				-1.3
2,981,264	+				+0.0
2,981,264	+				-0.1
2,981,265	-				-0.0
2,981,265	-				+0.3
2,981,267	-				-0.4
2,981,281	+				+0.8
2,981,281	+				-3.0
2,981,281	+				-0.6
2,981,281	+				-1.3
2,981,282	-				-0.5
2,981,282	-				+0.9
2,981,282	-				-2.0
2,981,282	-				+1.1
2,981,285	+				-1.0
2,981,286	-				-0.6
2,981,326	+				-1.2
2,981,327	-				-0.7
2,981,327	-				-1.9
2,981,332	+				-0.7
2,981,332	+				-1.8
2,981,357	-				+1.0
2,981,382	+				+0.3
2,981,383	-				+0.7
2,981,383	-				+0.1
2,981,480	-				-0.3
2,981,480	-				-1.7
2,981,480	-				-0.5
2,981,501	+				-1.0
2,981,501	+				-0.1
2,981,501	+				+0.3
2,981,502	-				+0.3
2,981,510	-				-2.0
2,981,510	-				+0.4
2,981,510	-				+1.1
2,981,512	-				-1.0
2,981,512	-				-0.6
2,981,512	-				-0.3
2,981,512	-				+0.2
2,981,512	-				+0.5
2,981,512	-				+0.7
2,981,512	-				+1.1
2,981,512	-				+2.0
2,981,512	-				+0.8
2,981,512	-				+0.3
2,981,514	-				+0.3
2,981,514	-				+0.3
2,981,514	-				+0.4
2,981,514	-				-0.6
2,981,514	-				-0.4
2,981,637	+				-2.3
2,981,637	+				-0.7
2,981,638	-				+0.5
2,981,645	+				-1.3
2,981,702	-				-1.7
2,981,704	+				-0.0
2,981,705	-				+0.3
2,981,740	+				+0.5
2,981,742	+				-0.4
2,981,744	+				-1.1
2,981,744	+				-0.0
2,981,744	+				-0.9
2,981,744	+				+0.3
2,981,744	+				+0.5
2,981,744	+				-1.0
2,981,744	+				+1.7
2,981,744	+				-1.3
2,981,744	+				-2.5
2,981,744	+				-0.7
2,981,749	+				-1.0
2,981,749	+				-0.7
2,981,749	+				-0.8
2,981,749	+				-0.5
2,981,749	+				-0.0
2,981,750	-				+0.1
2,981,750	-				+0.7
2,981,750	-				-1.0
2,981,750	-				+0.1
2,981,750	-				-0.1
2,981,750	-				-1.0
2,981,751	+				-0.9
2,981,751	+				-2.6
2,981,751	+				+0.5
2,981,751	+				+0.9
2,981,751	+				-0.6
2,981,752	-				+0.5
2,981,752	-				+1.6
2,981,752	-				-0.7
2,981,757	-				+1.9
2,981,757	-				-0.5
2,981,757	-				-1.7
2,981,809	+				-0.7
2,981,810	-				-2.7
2,981,810	-				+0.4
2,981,810	-				+0.3
2,981,823	+				-1.0
2,981,824	-				-1.3
2,981,833	+				-0.9
2,981,856	+				-1.7
2,981,856	+				+0.9
2,981,856	+				-1.9
2,981,856	+				-0.3
2,981,856	+				+1.1
2,981,856	+				+1.1
2,981,857	-				+0.4
2,981,857	-				-0.6
2,981,857	-				-1.2
2,981,871	+				-0.8
2,981,871	+				+0.0
2,981,871	+				-0.1
2,981,872	-				-0.8
2,981,872	-				+0.3
2,981,875	+				-1.1
2,981,875	+				-0.1
2,981,875	+				-0.7
2,981,875	+				-0.7
2,981,876	-				+0.0
2,981,876	-				-0.4
2,981,876	-				-0.5
2,981,876	-				-0.0
2,981,876	-				+0.0
2,981,978	+				+0.1
2,981,979	-				+1.2
2,982,000	+				-0.2
2,982,050	+				-2.5
2,982,050	+				+0.2
2,982,067	+				-0.1
2,982,067	+				-0.3
2,982,067	+				-0.7
2,982,067	+				-2.7
2,982,067	+				+0.3
2,982,068	-				-1.3
2,982,087	-				-0.9
2,982,087	-				-0.9
2,982,088	+				-1.2
2,982,088	+				-0.2
2,982,088	+				-0.6
2,982,088	+				-0.9
2,982,089	-				+0.1
2,982,089	-				-0.3
2,982,089	-				-0.9
2,982,089	-				-0.9
2,982,121	-				+0.3
2,982,139	-				+0.8
2,982,139	-				-0.1
2,982,139	-				+0.3
2,982,159	+				-1.9
2,982,160	-				+1.7
2,982,182	+				-0.9
2,982,183	-				+1.3
2,982,183	-				-1.8
2,982,198	+				-2.3