Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13615

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,922,169	+		DZA65_RS13610	0.47	+0.4
2,922,242	-		DZA65_RS13610	0.54	-0.3
2,922,242	-		DZA65_RS13610	0.54	-0.1
2,922,242	-		DZA65_RS13610	0.54	+1.1
2,922,247	+		DZA65_RS13610	0.54	+0.6
2,922,247	+		DZA65_RS13610	0.54	-1.7
2,922,248	-		DZA65_RS13610	0.55	+0.3
2,922,363	+		DZA65_RS13610	0.65	-0.2
2,922,364	-		DZA65_RS13610	0.65	-0.4
2,922,364	-		DZA65_RS13610	0.65	-0.4
2,922,373	+		DZA65_RS13610	0.66	+0.3
2,922,550	+		DZA65_RS13610	0.83	-2.5
2,922,550	+		DZA65_RS13610	0.83	-1.5
2,922,550	+		DZA65_RS13610	0.83	+0.9
2,922,550	+		DZA65_RS13610	0.83	+1.1
2,922,551	-		DZA65_RS13610	0.83	+0.0
2,922,551	-		DZA65_RS13610	0.83	-1.5
2,922,551	-		DZA65_RS13610	0.83	+1.1
2,922,576	+		DZA65_RS13610	0.85	-1.3
2,922,576	+		DZA65_RS13610	0.85	+1.4
2,922,576	+		DZA65_RS13610	0.85	-0.8
2,922,577	-		DZA65_RS13610	0.85	-0.1
2,922,680	-				+0.3
2,922,693	+				+1.1
2,922,693	+				-0.2
2,922,693	+				-2.5
2,922,693	+				-1.2
2,922,694	-				-0.5
2,922,694	-				-1.7
2,922,694	-				-0.5
2,922,694	-				+0.8
2,922,730	+				-0.1
2,922,730	+				+0.3
2,922,731	-				-1.1
2,922,834	+				+1.9
2,922,834	+				-1.3
2,922,835	-				-3.1
2,922,835	-				+0.3
2,922,856	+				-1.3
2,922,861	+				+0.7
2,922,862	-				+2.4
2,922,915	+				+0.0
2,922,922	+				-1.1
2,922,922	+				-0.5
2,922,937	-				+0.3
2,922,966	-				+1.9
2,922,966	-				+1.0
2,923,003	+				-0.4
2,923,024	+				-0.8
2,923,024	+				+1.0
2,923,025	-				-0.1
2,923,025	-				-0.7
2,923,037	-				-1.0
2,923,037	-				-0.7
2,923,044	+				-1.0
2,923,044	+				-1.8
2,923,044	+				-1.6
2,923,044	+				-0.5
2,923,044	+				-0.5
2,923,045	-				-0.6
2,923,045	-				-0.1
2,923,045	-				-0.3
2,923,045	-				+0.3
2,923,045	-				-0.4
2,923,045	-				+0.9
2,923,356	+		DZA65_RS13615	0.23	+0.3
2,923,356	+		DZA65_RS13615	0.23	-1.2
2,923,356	+		DZA65_RS13615	0.23	+0.5
2,923,357	-		DZA65_RS13615	0.23	+0.9
2,923,357	-		DZA65_RS13615	0.23	-1.7
2,923,357	-		DZA65_RS13615	0.23	+0.9
2,923,359	+		DZA65_RS13615	0.23	+1.0
2,923,359	+		DZA65_RS13615	0.23	+0.4
2,923,360	-		DZA65_RS13615	0.23	-0.7
2,923,371	+		DZA65_RS13615	0.24	-3.6
2,923,372	-		DZA65_RS13615	0.24	-0.1
2,923,385	+		DZA65_RS13615	0.25	-1.5
2,923,484	-		DZA65_RS13615	0.32	-2.5
2,923,484	-		DZA65_RS13615	0.32	-2.7
2,923,527	+		DZA65_RS13615	0.35	-1.4
2,923,527	+		DZA65_RS13615	0.35	-0.6
2,923,528	-		DZA65_RS13615	0.35	-1.5
2,923,528	-		DZA65_RS13615	0.35	+0.6
2,923,565	-		DZA65_RS13615	0.37	-1.5
2,923,574	-		DZA65_RS13615	0.38	+0.5
2,923,661	-		DZA65_RS13615	0.44	-2.1
2,923,686	+		DZA65_RS13615	0.46	-2.3
2,923,686	+		DZA65_RS13615	0.46	-1.1
2,923,686	+		DZA65_RS13615	0.46	-0.6
2,923,686	+		DZA65_RS13615	0.46	-0.1
2,923,686	+		DZA65_RS13615	0.46	-1.1
2,923,686	+		DZA65_RS13615	0.46	-0.6
2,923,686	+		DZA65_RS13615	0.46	+0.2
2,923,687	-		DZA65_RS13615	0.46	-1.5
2,923,687	-		DZA65_RS13615	0.46	+0.7
2,923,687	-		DZA65_RS13615	0.46	-3.2
2,923,687	-		DZA65_RS13615	0.46	-2.3
2,923,687	-		DZA65_RS13615	0.46	+0.3
2,923,741	+		DZA65_RS13615	0.50	-1.7
2,923,742	-		DZA65_RS13615	0.50	-1.3
2,923,742	-		DZA65_RS13615	0.50	-1.1
2,923,742	-		DZA65_RS13615	0.50	-0.0
2,923,742	-		DZA65_RS13615	0.50	+0.3
2,923,742	-		DZA65_RS13615	0.50	-0.3
2,923,742	-		DZA65_RS13615	0.50	-1.0
2,923,742	-		DZA65_RS13615	0.50	-0.7
2,923,797	-		DZA65_RS13615	0.54	+0.9
2,923,825	+		DZA65_RS13615	0.56	-2.0
2,923,826	-		DZA65_RS13615	0.56	-0.3
2,923,852	+		DZA65_RS13615	0.57	-0.5
2,923,852	+		DZA65_RS13615	0.57	-0.1
2,923,852	+		DZA65_RS13615	0.57	-2.7
2,923,853	-		DZA65_RS13615	0.58	-0.7
2,923,853	-		DZA65_RS13615	0.58	-0.1
2,923,853	-		DZA65_RS13615	0.58	-3.3
2,923,853	-		DZA65_RS13615	0.58	-0.7
2,923,869	+		DZA65_RS13615	0.59	-1.5
2,923,869	+		DZA65_RS13615	0.59	-1.1
2,923,869	+		DZA65_RS13615	0.59	+0.3
2,923,869	+		DZA65_RS13615	0.59	-3.1
2,923,869	+		DZA65_RS13615	0.59	-1.7
2,923,869	+		DZA65_RS13615	0.59	+0.6
2,923,869	+		DZA65_RS13615	0.59	-2.3
2,923,870	-		DZA65_RS13615	0.59	+0.3
2,923,870	-		DZA65_RS13615	0.59	+0.4
2,923,870	-		DZA65_RS13615	0.59	-2.1
2,923,870	-		DZA65_RS13615	0.59	-0.2
2,923,870	-		DZA65_RS13615	0.59	+0.3
2,923,870	-				-1.3
2,923,870	-		DZA65_RS13615	0.59	-2.3
2,923,870	-		DZA65_RS13615	0.59	-2.9
2,923,873	+		DZA65_RS13615	0.59	-1.6
2,923,874	-		DZA65_RS13615	0.59	+0.0
2,924,055	+		DZA65_RS13615	0.72	-1.1
2,924,056	-		DZA65_RS13615	0.72	-0.5
2,924,073	+		DZA65_RS13615	0.73	-2.5
2,924,073	+		DZA65_RS13615	0.73	-2.1
2,924,073	+		DZA65_RS13615	0.73	+0.5
2,924,073	+		DZA65_RS13615	0.73	-1.3
2,924,073	+		DZA65_RS13615	0.73	-2.8
2,924,073	+		DZA65_RS13615	0.73	-1.7
2,924,073	+		DZA65_RS13615	0.73	-1.2
2,924,074	-		DZA65_RS13615	0.73	+0.5
2,924,074	-		DZA65_RS13615	0.73	-1.6
2,924,074	-		DZA65_RS13615	0.73	-1.5
2,924,074	-		DZA65_RS13615	0.73	-2.0
2,924,141	-		DZA65_RS13615	0.78	-0.1
2,924,141	-		DZA65_RS13615	0.78	-0.7
2,924,155	+		DZA65_RS13615	0.79	-3.1
2,924,155	+		DZA65_RS13615	0.79	-1.3
2,924,155	+		DZA65_RS13615	0.79	-1.9
2,924,155	+		DZA65_RS13615	0.79	-1.7
2,924,155	+		DZA65_RS13615	0.79	-0.7
2,924,155	+		DZA65_RS13615	0.79	-2.9
2,924,155	+		DZA65_RS13615	0.79	-2.7
2,924,155	+		DZA65_RS13615	0.79	-1.5
2,924,156	-		DZA65_RS13615	0.79	-0.5
2,924,156	-		DZA65_RS13615	0.79	-0.5
2,924,156	-		DZA65_RS13615	0.79	-0.1
2,924,156	-		DZA65_RS13615	0.79	-2.5
2,924,156	-		DZA65_RS13615	0.79	+0.3
2,924,156	-		DZA65_RS13615	0.79	-0.3
2,924,156	-				+0.9
2,924,156	-		DZA65_RS13615	0.79	-0.1
2,924,156	-		DZA65_RS13615	0.79	+1.0
2,924,156	-		DZA65_RS13615	0.79	-2.1
2,924,156	-		DZA65_RS13615	0.79	-0.5
2,924,156	-		DZA65_RS13615	0.79	-0.1
2,924,197	+		DZA65_RS13615	0.82	-1.5
2,924,198	-		DZA65_RS13615	0.82	+0.1
2,924,198	-		DZA65_RS13615	0.82	-1.5
2,924,198	-		DZA65_RS13615	0.82	-2.4
2,924,206	-		DZA65_RS13615	0.82	+0.7
2,924,243	-		DZA65_RS13615	0.85	-0.2
2,924,350	+				+0.3
2,924,350	+				-1.3
2,924,350	+				-0.7
2,924,422	+				-1.1
2,924,427	-				-2.6
2,924,461	+				-1.7
2,924,461	+				+1.6
2,924,461	+				-0.8
2,924,461	+				-1.6
2,924,461	+				-1.3
2,924,461	+				-0.7
2,924,461	+				-2.3
2,924,461	+				-0.5
2,924,462	-				+0.5
2,924,462	-				-1.5
2,924,462	-				-0.1
2,924,462	-				-1.3
2,924,462	-				+3.3
2,924,464	+				-1.7
2,924,464	+				-2.7
2,924,465	-				-2.5
2,924,465	-				+1.3
2,924,481	+				+1.3
2,924,484	+				-2.3
2,924,484	+				-0.6
2,924,484	+				-0.8
2,924,484	+				-1.9
2,924,484	+				-1.5
2,924,484	+				-1.3
2,924,484	+				-0.7
2,924,484	+				-1.3
2,924,484	+				-0.3
2,924,484	+				+0.3
2,924,484	+				-2.4
2,924,485	-				+0.3
2,924,485	-				+0.7
2,924,485	-				+0.0
2,924,485	-				-0.7
2,924,485	-				-0.5
2,924,485	-				-0.7
2,924,485	-				+0.3
2,924,485	-				-0.2
2,924,485	-				-0.7
2,924,486	+				+0.5
2,924,486	+				-0.7
2,924,486	+				-0.3
2,924,486	+				+0.9
2,924,486	+				-1.3
2,924,486	+				-0.2
2,924,486	+				+0.2
2,924,486	+				-1.5
2,924,487	-				+1.1
2,924,487	-				-1.5
2,924,487	-				-0.3
2,924,487	-				-1.1
2,924,487	-				+1.1
2,924,487	-				-0.7
2,924,487	-				+1.3
2,924,487	-				-0.4
2,924,487	-				+1.0
2,924,487	-				+0.7
2,924,495	+				-1.2
2,924,495	+				-1.7
2,924,495	+				-2.6
2,924,495	+				-0.3
2,924,496	-				+0.9
2,924,554	-				-1.1
2,924,573	+				-1.0
2,924,662	+				-0.6
2,924,674	+				-0.3
2,924,675	-				+0.3
2,924,766	+				-1.1
2,924,817	+				-0.3
2,924,818	-				+1.2
2,924,877	+		DZA65_RS13620	0.12	+0.1
2,924,887	+				-0.7
2,924,888	-		DZA65_RS13620	0.13	-0.7
2,924,909	-				-0.7
2,924,909	-		DZA65_RS13620	0.16	+0.3
2,924,909	-				+1.0
2,924,909	-		DZA65_RS13620	0.16	-0.1
2,925,056	+		DZA65_RS13620	0.35	+1.2
2,925,057	-		DZA65_RS13620	0.35	+0.3
2,925,057	-		DZA65_RS13620	0.35	+2.3
2,925,057	-		DZA65_RS13620	0.35	-0.7
2,925,057	-		DZA65_RS13620	0.35	+0.7
2,925,057	-		DZA65_RS13620	0.35	+0.7
2,925,057	-		DZA65_RS13620	0.35	+1.3
2,925,057	-		DZA65_RS13620	0.35	+0.9
2,925,057	-		DZA65_RS13620	0.35	-0.1
2,925,058	+		DZA65_RS13620	0.35	-0.1
2,925,058	+		DZA65_RS13620	0.35	-1.5
2,925,058	+		DZA65_RS13620	0.35	-1.2
2,925,058	+		DZA65_RS13620	0.35	+0.3
2,925,058	+		DZA65_RS13620	0.35	-1.1
2,925,058	+		DZA65_RS13620	0.35	-1.1
2,925,058	+		DZA65_RS13620	0.35	+0.8
2,925,058	+		DZA65_RS13620	0.35	-0.1
2,925,059	-		DZA65_RS13620	0.35	-0.7
2,925,059	-		DZA65_RS13620	0.35	-0.2
2,925,059	-		DZA65_RS13620	0.35	+1.4
2,925,059	-		DZA65_RS13620	0.35	+0.3
2,925,059	-		DZA65_RS13620	0.35	-0.5
2,925,158	+		DZA65_RS13620	0.47	+1.7
2,925,158	+		DZA65_RS13620	0.47	-2.3
2,925,158	+		DZA65_RS13620	0.47	+0.0
2,925,159	-		DZA65_RS13620	0.48	-0.7
2,925,159	-		DZA65_RS13620	0.48	-1.0
2,925,164	+		DZA65_RS13620	0.48	+1.1
2,925,164	+		DZA65_RS13620	0.48	-1.7
2,925,164	+		DZA65_RS13620	0.48	+0.4
2,925,164	+		DZA65_RS13620	0.48	-1.6
2,925,164	+		DZA65_RS13620	0.48	-0.1
2,925,165	-		DZA65_RS13620	0.48	-0.3
2,925,165	-		DZA65_RS13620	0.48	-0.4
2,925,165	-		DZA65_RS13620	0.48	+0.4
2,925,165	-		DZA65_RS13620	0.48	-0.3
2,925,165	-		DZA65_RS13620	0.48	+0.9
2,925,165	-		DZA65_RS13620	0.48	+0.4
2,925,165	-		DZA65_RS13620	0.48	+0.7
2,925,165	-		DZA65_RS13620	0.48	-1.1
2,925,204	-		DZA65_RS13620	0.53	+0.4
2,925,274	+		DZA65_RS13620	0.62	+0.0
2,925,274	+		DZA65_RS13620	0.62	-0.4
2,925,275	-		DZA65_RS13620	0.62	-0.2
2,925,277	+		DZA65_RS13620	0.62	-0.1
2,925,277	+		DZA65_RS13620	0.62	-0.3
2,925,277	+		DZA65_RS13620	0.62	+2.9
2,925,277	+		DZA65_RS13620	0.62	+0.3
2,925,277	+		DZA65_RS13620	0.62	+2.3
2,925,277	+		DZA65_RS13620	0.62	+0.9
2,925,277	+		DZA65_RS13620	0.62	+1.0
2,925,278	-		DZA65_RS13620	0.63	-0.5
2,925,278	-		DZA65_RS13620	0.63	-0.2
2,925,278	-		DZA65_RS13620	0.63	-0.3
2,925,278	-		DZA65_RS13620	0.63	+0.7
2,925,278	-		DZA65_RS13620	0.63	+0.9
2,925,280	+		DZA65_RS13620	0.63	-0.7
2,925,280	+		DZA65_RS13620	0.63	-2.5
2,925,280	+		DZA65_RS13620	0.63	-0.3
2,925,280	+		DZA65_RS13620	0.63	-0.1
2,925,280	+		DZA65_RS13620	0.63	-0.1
2,925,280	+		DZA65_RS13620	0.63	+0.3
2,925,280	+		DZA65_RS13620	0.63	+0.9
2,925,281	-				-0.3
2,925,332	+		DZA65_RS13620	0.69	-0.5
2,925,332	+		DZA65_RS13620	0.69	+0.4
2,925,378	+		DZA65_RS13620	0.75	+0.2
2,925,378	+		DZA65_RS13620	0.75	+0.9
2,925,378	+		DZA65_RS13620	0.75	-1.6
2,925,378	+		DZA65_RS13620	0.75	-0.1
2,925,378	+		DZA65_RS13620	0.75	-1.5
2,925,378	+		DZA65_RS13620	0.75	+1.1
2,925,379	-		DZA65_RS13620	0.75	+0.6
2,925,379	-		DZA65_RS13620	0.75	-1.0
2,925,379	-		DZA65_RS13620	0.75	-2.1