Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13475

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,891,730	+		DZA65_RS13470	0.43	-0.7
2,891,730	+		DZA65_RS13470	0.43	-1.3
2,891,738	+		DZA65_RS13470	0.44	-0.9
2,891,738	+		DZA65_RS13470	0.44	-0.8
2,891,739	-		DZA65_RS13470	0.44	-1.5
2,891,739	-		DZA65_RS13470	0.44	-0.9
2,891,750	+		DZA65_RS13470	0.44	-2.2
2,891,751	-		DZA65_RS13470	0.45	+0.9
2,891,760	+		DZA65_RS13470	0.45	+1.6
2,891,761	-		DZA65_RS13470	0.45	+0.3
2,891,805	+		DZA65_RS13470	0.48	+0.0
2,891,805	+		DZA65_RS13470	0.48	-1.3
2,891,805	+		DZA65_RS13470	0.48	-2.5
2,891,805	+		DZA65_RS13470	0.48	-0.7
2,891,805	+		DZA65_RS13470	0.48	+0.3
2,891,805	+		DZA65_RS13470	0.48	-0.2
2,891,805	+				+2.3
2,891,806	-				-1.3
2,891,806	-		DZA65_RS13470	0.48	+0.7
2,891,806	-		DZA65_RS13470	0.48	+1.4
2,891,806	-		DZA65_RS13470	0.48	+0.6
2,891,806	-		DZA65_RS13470	0.48	+0.3
2,891,806	-		DZA65_RS13470	0.48	+0.0
2,891,806	-		DZA65_RS13470	0.48	+0.8
2,891,806	-		DZA65_RS13470	0.48	+0.8
2,891,806	-		DZA65_RS13470	0.48	-1.7
2,891,806	-		DZA65_RS13470	0.48	+1.4
2,891,806	-		DZA65_RS13470	0.48	+1.0
2,891,806	-		DZA65_RS13470	0.48	+0.7
2,891,806	-		DZA65_RS13470	0.48	-0.6
2,891,806	-		DZA65_RS13470	0.48	+0.0
2,891,806	-		DZA65_RS13470	0.48	+0.4
2,891,806	-		DZA65_RS13470	0.48	+2.7
2,891,806	-		DZA65_RS13470	0.48	+0.1
2,891,814	+		DZA65_RS13470	0.49	-0.7
2,891,900	+		DZA65_RS13470	0.55	-1.8
2,891,900	+		DZA65_RS13470	0.55	+0.3
2,891,900	+		DZA65_RS13470	0.55	-0.7
2,891,900	+		DZA65_RS13470	0.55	-2.1
2,891,901	-		DZA65_RS13470	0.55	-0.1
2,891,901	-		DZA65_RS13470	0.55	+0.5
2,891,901	-		DZA65_RS13470	0.55	-2.2
2,891,901	-		DZA65_RS13470	0.55	+1.7
2,891,901	-		DZA65_RS13470	0.55	-0.1
2,891,901	-		DZA65_RS13470	0.55	-1.2
2,891,901	-		DZA65_RS13470	0.55	-0.5
2,891,901	-		DZA65_RS13470	0.55	+0.9
2,891,901	-		DZA65_RS13470	0.55	+0.6
2,891,901	-		DZA65_RS13470	0.55	+2.3
2,891,903	+		DZA65_RS13470	0.55	+0.8
2,891,904	-		DZA65_RS13470	0.55	+1.6
2,891,939	+		DZA65_RS13470	0.58	+0.3
2,891,940	-		DZA65_RS13470	0.58	-1.9
2,891,940	-		DZA65_RS13470	0.58	+0.3
2,891,940	-		DZA65_RS13470	0.58	+0.8
2,891,940	-		DZA65_RS13470	0.58	-0.5
2,891,951	+		DZA65_RS13470	0.58	-0.1
2,891,951	+		DZA65_RS13470	0.58	-0.7
2,891,951	+		DZA65_RS13470	0.58	-0.5
2,891,952	-		DZA65_RS13470	0.58	+0.4
2,891,952	-		DZA65_RS13470	0.58	+0.3
2,891,952	-		DZA65_RS13470	0.58	-0.1
2,891,993	+		DZA65_RS13470	0.61	-1.7
2,892,043	+		DZA65_RS13470	0.65	-2.1
2,892,117	+		DZA65_RS13470	0.70	-2.5
2,892,117	+		DZA65_RS13470	0.70	-1.9
2,892,118	-		DZA65_RS13470	0.70	-1.7
2,892,136	+		DZA65_RS13470	0.71	-1.0
2,892,136	+		DZA65_RS13470	0.71	-0.7
2,892,136	+		DZA65_RS13470	0.71	-0.7
2,892,136	+		DZA65_RS13470	0.71	-1.1
2,892,137	-		DZA65_RS13470	0.71	-1.9
2,892,137	-		DZA65_RS13470	0.71	-0.1
2,892,137	-		DZA65_RS13470	0.71	+1.1
2,892,335	+		DZA65_RS13470	0.85	-0.9
2,892,335	+		DZA65_RS13470	0.85	+1.1
2,892,335	+		DZA65_RS13470	0.85	-1.0
2,892,335	+		DZA65_RS13470	0.85	+1.3
2,892,335	+		DZA65_RS13470	0.85	-0.0
2,892,335	+		DZA65_RS13470	0.85	-0.3
2,892,335	+		DZA65_RS13470	0.85	-2.4
2,892,335	+		DZA65_RS13470	0.85	+0.4
2,892,335	+		DZA65_RS13470	0.85	-1.3
2,892,336	-		DZA65_RS13470	0.85	+0.9
2,892,336	-		DZA65_RS13470	0.85	-0.0
2,892,336	-		DZA65_RS13470	0.85	+0.3
2,892,336	-		DZA65_RS13470	0.85	+1.1
2,892,336	-		DZA65_RS13470	0.85	-1.0
2,892,336	-		DZA65_RS13470	0.85	-1.7
2,892,336	-		DZA65_RS13470	0.85	-0.1
2,892,337	+		DZA65_RS13470	0.85	+0.1
2,892,337	+		DZA65_RS13470	0.85	-0.6
2,892,337	+		DZA65_RS13470	0.85	+1.7
2,892,338	-		DZA65_RS13470	0.85	-0.2
2,892,338	-		DZA65_RS13470	0.85	-0.4
2,892,338	-		DZA65_RS13470	0.85	-0.1
2,892,455	+				+2.8
2,892,456	-				-0.2
2,892,456	-				-0.0
2,892,500	+				-1.9
2,892,500	+				+2.3
2,892,501	-				-1.5
2,892,501	-				+0.6
2,892,501	-				-0.2
2,892,501	-				-0.3
2,892,524	+				-0.6
2,892,525	-				-1.2
2,892,532	-				+0.4
2,892,532	-				-0.2
2,892,535	-				+0.8
2,892,555	+				-0.0
2,892,555	+				+0.4
2,892,555	+				+0.4
2,892,556	-				-0.3
2,892,556	-				-1.1
2,892,556	-				-0.4
2,892,556	-				+0.8
2,892,579	+				-0.3
2,892,579	+				-0.7
2,892,579	+				+0.4
2,892,580	-				+2.4
2,892,580	-				-0.2
2,892,614	-				+1.5
2,892,614	-				+1.2
2,892,621	+				-2.9
2,892,622	-				+0.3
2,892,625	-				+0.8
2,892,658	+				-1.5
2,892,658	+				-1.3
2,892,658	+				-0.3
2,892,658	+				-0.1
2,892,658	+				+1.6
2,892,658	+				-0.7
2,892,658	+				-1.3
2,892,658	+				+1.4
2,892,659	-				+0.1
2,892,659	-				-0.0
2,892,659	-				-0.5
2,892,659	-				-0.6
2,892,659	-				+1.6
2,892,659	-				+0.3
2,892,667	+				-2.1
2,892,668	-				-0.2
2,892,773	+				-1.3
2,892,774	-				+1.3
2,892,774	-				-0.5
2,892,827	+		DZA65_RS13475	0.16	-0.2
2,892,830	-		DZA65_RS13475	0.16	+0.3
2,892,830	-		DZA65_RS13475	0.16	-3.1
2,892,832	+		DZA65_RS13475	0.17	-1.7
2,892,833	-		DZA65_RS13475	0.17	-0.6
2,892,833	-		DZA65_RS13475	0.17	+0.1
2,892,904	+		DZA65_RS13475	0.26	+0.2
2,892,904	+		DZA65_RS13475	0.26	-1.2
2,892,930	-		DZA65_RS13475	0.30	-1.0
2,892,934	+		DZA65_RS13475	0.30	-0.7
2,892,934	+		DZA65_RS13475	0.30	-0.4
2,892,935	-		DZA65_RS13475	0.31	+0.1
2,892,992	+		DZA65_RS13475	0.38	-0.5
2,892,993	-		DZA65_RS13475	0.39	-1.1
2,893,051	+		DZA65_RS13475	0.46	-2.1
2,893,051	+		DZA65_RS13475	0.46	+0.3
2,893,052	-		DZA65_RS13475	0.47	-0.2
2,893,067	-		DZA65_RS13475	0.49	-0.9
2,893,180	+		DZA65_RS13475	0.64	+1.6
2,893,180	+		DZA65_RS13475	0.64	-0.5
2,893,181	-		DZA65_RS13475	0.64	-0.7
2,893,181	-		DZA65_RS13475	0.64	+1.3
2,893,181	-		DZA65_RS13475	0.64	+1.3
2,893,219	+		DZA65_RS13475	0.69	-1.7
2,893,234	+		DZA65_RS13475	0.71	+1.1
2,893,235	-		DZA65_RS13475	0.71	-1.7
2,893,389	+				-0.3
2,893,390	-				-1.0
2,893,390	-				-0.0
2,893,407	+				-1.9
2,893,408	-				-2.3
2,893,419	+				-1.4
2,893,419	+				+0.5
2,893,419	+				-0.9
2,893,419	+				+0.3
2,893,420	-				-0.3
2,893,439	-				+0.3
2,893,444	+				-0.5
2,893,445	-				+1.1
2,893,450	+				-0.3
2,893,450	+				-1.0
2,893,453	-				-0.4
2,893,453	-				+0.4
2,893,453	-				+0.1
2,893,462	-				-0.0
2,893,500	+				-0.6
2,893,518	-				+0.3
2,893,544	+				-0.2
2,893,554	+				-1.5
2,893,560	+				-0.1
2,893,561	-				+1.6
2,893,564	-				+0.1
2,893,583	+				-0.0
2,893,583	+				-2.4
2,893,583	+				-2.1
2,893,584	-				-0.7
2,893,584	-				-0.4
2,893,631	+				-2.7
2,893,631	+				-2.1
2,893,631	+				-0.6
2,893,631	+				-0.7
2,893,632	-				+0.4
2,893,632	-				-0.2
2,893,632	-				-1.5
2,893,633	+				-1.3
2,893,633	+				-0.7
2,893,633	+				-0.7
2,893,634	-				+0.3
2,893,634	-				+0.9
2,893,641	-				+0.9
2,893,641	-				-0.3
2,893,641	-				+0.6
2,893,769	+				-1.3
2,893,770	-				+0.3
2,893,770	-				-1.2
2,893,770	-				-0.3
2,893,770	-				-0.9
2,893,770	-				-0.6
2,893,770	-				-0.3
2,893,776	-				-2.1
2,893,779	-				-0.1
2,893,779	-				-0.5
2,893,779	-				+0.9
2,893,779	-				-0.3
2,893,779	-				-1.3
2,893,825	+				+0.8
2,893,839	+				-0.0
2,893,870	-				-1.5
2,893,870	-				-0.3
2,893,870	-				+1.0
2,893,872	+				-1.3
2,893,873	-				+0.0
2,893,912	+				-0.0
2,893,912	+				-0.9
2,893,912	+				-1.2
2,893,913	-				-0.0
2,893,913	-				-0.3
2,893,916	+				-1.3
2,893,916	+				+0.4
2,893,916	+				-0.6
2,893,917	-				+0.5
2,893,917	-				-0.3
2,893,917	-				-0.2
2,893,917	-				-3.2
2,893,917	-				-0.6
2,893,920	+				-0.6
2,893,921	-				+0.2
2,893,921	-				+0.2
2,893,921	-				+0.9
2,893,921	-				+0.9
2,893,921	-				+1.1
2,893,921	-				-1.7
2,893,921	-				+0.6
2,893,924	+				-1.9
2,893,924	+				-0.3
2,893,925	-				+1.5
2,893,925	-				-1.5
2,893,937	-				-0.2
2,893,943	+				-0.2
2,893,948	-				-2.1
2,893,964	+				+0.8
2,893,970	-				-0.1
2,893,970	-				-2.7
2,893,972	-				-0.2
2,894,030	+				+0.0
2,894,072	+				+0.5
2,894,073	-				+0.1
2,894,118	+				+2.4
2,894,182	+				-0.4
2,894,197	+				+0.0
2,894,250	-		DZA65_RS13485	0.19	+0.6
2,894,261	+		DZA65_RS13485	0.22	-0.7
2,894,261	+		DZA65_RS13485	0.22	-1.7
2,894,262	-		DZA65_RS13485	0.22	-0.3
2,894,262	-		DZA65_RS13485	0.22	-1.3
2,894,269	+		DZA65_RS13485	0.23	-0.7
2,894,334	+		DZA65_RS13485	0.37	-1.1
2,894,335	-		DZA65_RS13485	0.38	-0.7
2,894,426	-		DZA65_RS13485	0.57	+0.8