Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13425

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,878,106	+		DZA65_RS13420	0.87	+0.3
2,878,106	+		DZA65_RS13420	0.87	-2.1
2,878,106	+		DZA65_RS13420	0.87	-1.5
2,878,106	+		DZA65_RS13420	0.87	+1.3
2,878,106	+		DZA65_RS13420	0.87	+0.1
2,878,106	+		DZA65_RS13420	0.87	-2.2
2,878,107	-		DZA65_RS13420	0.87	-0.3
2,878,107	-		DZA65_RS13420	0.87	+0.7
2,878,107	-		DZA65_RS13420	0.87	+0.1
2,878,107	-		DZA65_RS13420	0.87	+0.8
2,878,107	-		DZA65_RS13420	0.87	-0.3
2,878,252	+				+1.8
2,878,252	+				-0.3
2,878,253	-				-0.4
2,878,253	-				+1.0
2,878,380	+				+0.3
2,878,380	+				+0.5
2,878,380	+				+0.7
2,878,380	+				+0.8
2,878,380	+				-0.4
2,878,380	+				+0.9
2,878,380	+				-0.1
2,878,380	+				-0.5
2,878,381	-				+0.3
2,878,381	-				-0.9
2,878,381	-				+0.0
2,878,381	-				-0.6
2,878,381	-				-0.1
2,878,381	-				-0.3
2,878,381	-				-0.2
2,878,381	-				-0.3
2,878,381	-				-1.1
2,878,381	-				-1.0
2,878,381	-				-1.2
2,878,381	-				-0.7
2,878,381	-				+1.3
2,878,381	-				+0.1
2,878,381	-				-0.7
2,878,381	-				+0.5
2,878,381	-				-1.3
2,878,382	+				+0.3
2,878,383	-				+0.7
2,878,383	-				-0.5
2,878,383	-				-0.0
2,878,383	-				-1.1
2,878,383	-				-0.6
2,878,398	-				-0.6
2,878,409	+				+0.2
2,878,409	+				+0.2
2,878,410	-				-1.7
2,878,442	+				-0.0
2,878,442	+				-2.4
2,878,443	-				+1.8
2,878,443	-				-0.9
2,878,447	+				-1.3
2,878,459	+				+1.3
2,878,459	+				+0.3
2,878,460	-				-1.2
2,878,460	-				-0.2
2,878,460	-				+1.3
2,878,505	+				-0.9
2,878,505	+				+0.3
2,878,505	+				-0.2
2,878,505	+				+0.1
2,878,505	+				+0.3
2,878,505	+				-1.7
2,878,505	+				+0.3
2,878,505	+				-1.0
2,878,505	+				-1.2
2,878,505	+				-1.7
2,878,505	+				-2.0
2,878,505	+				-0.1
2,878,505	+				-1.2
2,878,505	+				-0.0
2,878,505	+				-1.0
2,878,505	+				-0.9
2,878,505	+				-1.3
2,878,505	+				-2.5
2,878,505	+				-1.0
2,878,505	+				+2.1
2,878,506	-				+0.5
2,878,506	-				-0.7
2,878,506	-				-0.7
2,878,506	-				-1.2
2,878,506	-				+0.4
2,878,506	-				-0.9
2,878,506	-				+0.1
2,878,506	-				+0.5
2,878,506	-				-0.5
2,878,506	-				+0.6
2,878,506	-				+0.6
2,878,506	-				+0.7
2,878,506	-				+0.3
2,878,506	-				-0.4
2,878,506	-				+1.3
2,878,506	-				-1.7
2,878,506	-				+0.6
2,878,506	-				+1.3
2,878,507	+				+0.8
2,878,507	+				-0.2
2,878,507	+				+1.4
2,878,507	+				-0.5
2,878,507	+				-1.3
2,878,507	+				-0.2
2,878,507	+				+0.1
2,878,507	+				-0.3
2,878,507	+				-1.0
2,878,507	+				-2.5
2,878,507	+				+0.8
2,878,508	-				+0.0
2,878,508	-				-1.2
2,878,508	-				-0.1
2,878,508	-				-0.4
2,878,508	-				+0.5
2,878,508	-				+1.4
2,878,508	-				+0.4
2,878,508	-				+1.8
2,878,508	-				-0.6
2,878,508	-				-0.7
2,878,508	-				-1.7
2,878,508	-				-0.3
2,878,508	-				-0.1
2,878,509	+				-1.3
2,878,509	+				-0.5
2,878,509	+				-0.5
2,878,509	+				+0.7
2,878,509	+				+0.3
2,878,509	+				-0.6
2,878,509	+				-0.2
2,878,509	+				+0.3
2,878,510	-				+0.2
2,878,510	-				-1.3
2,878,510	-				-0.4
2,878,510	-				-0.4
2,878,510	-				-0.3
2,878,510	-				+0.1
2,878,510	-				+0.6
2,878,510	-				-0.2
2,878,510	-				+0.6
2,878,510	-				+0.3
2,878,510	-				-1.7
2,878,524	+				+0.3
2,878,524	+				-2.9
2,878,524	+				+2.1
2,878,525	-				-0.0
2,878,525	-				-1.1
2,878,526	+				-0.5
2,878,526	+				-0.0
2,878,526	+				-0.9
2,878,526	+				-0.3
2,878,526	+				-0.4
2,878,526	+				-0.0
2,878,527	-				+0.6
2,878,527	-				-0.1
2,878,527	-				+2.0
2,878,527	-				+0.6
2,878,527	-				+0.1
2,878,527	-				-1.3
2,878,527	-				-1.0
2,878,527	-				+0.3
2,878,527	-				-0.5
2,878,527	-				-0.5
2,878,527	-				-0.5
2,878,527	-				-0.5
2,878,527	-				-1.2
2,878,527	-				-0.7
2,878,527	-				+0.5
2,878,527	-				-0.3
2,878,527	-				-0.2
2,878,527	-				-1.6
2,878,527	-				-1.4
2,878,527	-				+0.9
2,878,527	-				+0.5
2,878,549	+				+0.0
2,878,550	-				-1.3
2,878,611	+				-0.9
2,878,611	+				+0.6
2,878,611	+				-0.5
2,878,611	+				-0.1
2,878,612	-				+0.7
2,878,612	-				+1.2
2,878,612	-				+0.3
2,878,612	-				-0.6
2,878,612	-				-0.1
2,878,612	-				-0.7
2,878,612	-				-0.5
2,878,612	-				+0.7
2,878,612	-				+0.1
2,878,612	-				-0.4
2,878,612	-				+0.5
2,878,615	+				+1.1
2,878,615	+				-1.3
2,878,615	+				-2.1
2,878,615	+				-1.9
2,878,615	+				-0.2
2,878,615	+				-1.1
2,878,615	+				+0.1
2,878,615	+				+2.1
2,878,616	-				-0.1
2,878,616	-				-0.3
2,878,616	-				+0.3
2,878,616	-				-1.1
2,878,616	-				-0.2
2,878,616	-				+0.4
2,878,616	-				+0.8
2,878,616	-				+0.3
2,878,616	-				-0.0
2,878,616	-				-1.1
2,878,616	-				+0.7
2,878,616	-				-1.7
2,878,616	-				-1.0
2,878,616	-				-0.3
2,878,616	-				-1.7
2,878,616	-				-0.8
2,878,621	+				+0.3
2,878,621	+				+0.3
2,878,621	+				+0.4
2,878,621	+				-1.2
2,878,621	+				-1.7
2,878,621	+				-0.7
2,878,621	+				-2.5
2,878,621	+				-1.7
2,878,622	-				+1.0
2,878,622	-				-0.4
2,878,622	-				+0.0
2,878,622	-				-1.5
2,878,622	-				+2.2
2,878,622	-				-0.3
2,878,622	-				+0.6
2,878,622	-				+1.1
2,878,626	+				-0.3
2,878,626	+				+0.3
2,878,626	+				-1.9
2,878,626	+				-0.2
2,878,626	+				+0.6
2,878,627	-				+1.3
2,878,627	-				+0.7
2,878,627	-				-0.9
2,878,627	-				-0.1
2,878,630	+				-1.9
2,878,630	+				-1.3
2,878,630	+				-1.6
2,878,630	+				-0.7
2,878,630	+				-1.7
2,878,630	+				+0.5
2,878,630	+				+0.3
2,878,630	+				-1.1
2,878,630	+				-0.7
2,878,630	+				-0.3
2,878,630	+				-0.6
2,878,630	+				+0.3
2,878,630	+				+0.6
2,878,630	+				-0.7
2,878,631	-				-1.3
2,878,631	-				+0.1
2,878,631	-				+1.6
2,878,631	-				-0.2
2,878,631	-				-0.4
2,878,631	-				-0.1
2,878,631	-				+0.0
2,878,631	-				+1.3
2,878,631	-				-2.7
2,878,631	-				-1.1
2,878,631	-				+0.6
2,878,634	+				-0.4
2,878,634	+				-1.5
2,878,635	-				+0.3
2,878,635	-				+0.6
2,878,635	-				-0.0
2,878,635	-				-0.3
2,878,635	-				+0.5
2,878,635	-				+0.3
2,878,635	-				+0.7
2,878,645	+				+0.1
2,878,645	+				-0.3
2,878,646	-				-0.4
2,878,646	-				+0.3
2,878,646	-				-1.1
2,878,646	-				+0.6
2,878,646	-				+1.4
2,878,646	-				-0.6
2,878,646	-				+0.2
2,878,649	+				+0.8
2,878,649	+				-0.5
2,878,650	-				+0.7
2,878,650	-				-0.7
2,878,650	-				+1.0
2,878,650	-				-0.1
2,878,650	-				-2.5
2,878,650	-				-0.2
2,878,650	-				-2.1
2,878,650	-				+1.0
2,878,650	-				-0.0
2,878,650	-				-1.4
2,878,650	-				+0.3
2,878,653	+				-0.4
2,878,653	+				-0.4
2,878,653	+				-0.2
2,878,653	+				+0.1
2,878,653	+				+1.0
2,878,653	+				-1.9
2,878,653	+				-1.0
2,878,653	+				+0.6
2,878,653	+				+0.6
2,878,653	+				-0.3
2,878,653	+				+0.6
2,878,653	+				-1.7
2,878,654	-				-0.3
2,878,654	-				-0.1
2,878,654	-				-0.7
2,878,654	-				-0.5
2,878,654	-				+0.6
2,878,654	-				+0.3
2,878,654	-				+0.6
2,878,654	-				+1.9
2,878,654	-				-0.2
2,878,654	-				+0.0
2,878,662	-				-0.2
2,878,662	-				-0.1
2,878,664	+				+0.5
2,878,664	+				-1.0
2,878,665	-				+0.3
2,878,674	+				+1.8
2,878,675	-				+1.0
2,878,675	-				-0.5
2,878,698	+				-0.7
2,878,698	+				-0.3
2,878,698	+				-0.8
2,878,698	+				-1.3
2,878,699	-				-0.7
2,878,699	-				-0.4
2,878,699	-				+0.0
2,878,722	+				-0.4
2,878,723	-				+0.6
2,878,723	-				-0.2
2,878,723	-				+1.1
2,878,725	+				-0.7
2,878,736	+				-0.3
2,878,737	-				+1.5
2,878,737	-				-0.6
2,878,754	+				-1.3
2,878,761	+				+0.3
2,878,795	+				+0.6
2,878,795	+				+1.2
2,878,795	+				+0.3
2,878,796	-				+0.4
2,878,796	-				+0.3
2,878,796	-				+1.3
2,878,796	-				-0.4
2,878,796	-				-0.0
2,878,799	-				-0.4
2,878,989	+				-0.3
2,878,989	+				+0.8
2,878,989	+				+1.4
2,878,990	-				-0.2
2,878,990	-				+0.3
2,878,990	-				-1.2
2,878,990	-				-1.3
2,878,990	-				-1.7
2,878,990	-				-1.0
2,878,990	-				-0.2
2,878,990	-				-1.5
2,878,990	-				-1.7
2,878,990	-				-1.3
2,878,990	-				-0.1
2,878,990	-				-0.0
2,879,000	-				-2.8
2,879,000	-				-1.0
2,879,000	-				-1.3
2,879,000	-				-1.8
2,879,006	+				-1.2
2,879,006	+				-0.1
2,879,006	+				-0.7
2,879,058	+				-0.2
2,879,058	+				+0.3
2,879,058	+				+1.6
2,879,058	+				-2.1
2,879,058	+				+0.8
2,879,059	-				-0.7
2,879,059	-				-1.3
2,879,059	-				-2.5
2,879,059	-				-1.3
2,879,059	-				-1.1
2,879,065	+				-0.3
2,879,065	+				-0.2
2,879,065	+				-0.2
2,879,066	-				-3.9
2,879,075	+				-0.3
2,879,076	-				+0.5
2,879,098	+				-1.5
2,879,098	+				-2.1
2,879,098	+				-0.7
2,879,098	+				-2.1
2,879,098	+				-0.5
2,879,099	-				-4.2
2,879,106	+				-1.7
2,879,106	+				+0.3
2,879,106	+				-0.8
2,879,106	+				-2.7
2,879,106	+				+2.3
2,879,150	+				-1.4
2,879,150	+				-1.3
2,879,151	-				-1.3
2,879,151	-				-1.3
2,879,152	+				+1.3
2,879,152	+				-2.5
2,879,152	+				-1.7
2,879,152	+				-1.5
2,879,152	+				-0.7
2,879,152	+				-2.1
2,879,153	-				-2.7
2,879,161	+				-2.9
2,879,161	+				-2.3
2,879,161	+				-2.1
2,879,161	+				-0.7
2,879,162	-				-1.3
2,879,162	-				-0.7
2,879,162	-				-2.1
2,879,177	+				+0.7
2,879,177	+				-0.2
2,879,177	+				-2.1
2,879,178	-				-0.7
2,879,178	-				-1.7
2,879,178	-				-1.2
2,879,178	-				-0.3
2,879,178	-				+0.3
2,879,186	+				+0.7
2,879,187	-				-1.7
2,879,187	-				-2.2
2,879,246	+		DZA65_RS13425	0.12	-0.7
2,879,246	+		DZA65_RS13425	0.12	-1.6
2,879,246	+		DZA65_RS13425	0.12	-1.7
2,879,246	+		DZA65_RS13425	0.12	-1.7
2,879,246	+		DZA65_RS13425	0.12	+2.6
2,879,247	-		DZA65_RS13425	0.12	+0.3
2,879,247	-		DZA65_RS13425	0.12	+0.3
2,879,247	-		DZA65_RS13425	0.12	-2.1
2,879,247	-		DZA65_RS13425	0.12	-2.2
2,879,272	-		DZA65_RS13425	0.14	-2.1
2,879,309	+		DZA65_RS13425	0.17	+0.1
2,879,309	+		DZA65_RS13425	0.17	+0.8
2,879,310	-		DZA65_RS13425	0.17	-0.0
2,879,310	-		DZA65_RS13425	0.17	-1.3
2,879,310	-		DZA65_RS13425	0.17	-3.0
2,879,315	+		DZA65_RS13425	0.18	-1.7
2,879,315	+		DZA65_RS13425	0.18	-0.5
2,879,349	-		DZA65_RS13425	0.21	-2.1
2,879,349	-		DZA65_RS13425	0.21	-0.5
2,879,578	+		DZA65_RS13425	0.40	-0.1
2,879,579	-		DZA65_RS13425	0.40	-1.6
2,879,690	+		DZA65_RS13425	0.49	+0.3
2,879,712	-		DZA65_RS13425	0.51	-0.7
2,879,712	-		DZA65_RS13425	0.51	-3.9
2,879,884	+		DZA65_RS13425	0.65	-1.1
2,879,884	+		DZA65_RS13425	0.65	+0.3
2,879,940	+		DZA65_RS13425	0.70	-1.5
2,879,940	+		DZA65_RS13425	0.70	-1.7
2,880,137	-		DZA65_RS13425	0.86	+1.8
2,880,161	-		DZA65_RS13425	0.88	-2.1
2,880,280	-				-0.7
2,880,280	-				-0.8
2,880,330	+				-0.2
2,880,330	+				+1.0
2,880,331	-				-0.4
2,880,387	+				+0.9
2,880,387	+				-0.4
2,880,387	+				+0.4
2,880,412	+				-2.9
2,880,412	+				-0.5
2,880,412	+				+0.0
2,880,412	+				-0.5
2,880,412	+				-0.3
2,880,412	+				-1.0
2,880,412	+				-0.6
2,880,412	+				-0.7
2,880,412	+				-0.2
2,880,412	+				-1.0
2,880,412	+				-1.5
2,880,412	+				-0.3
2,880,412	+				-0.3
2,880,412	+				-0.3
2,880,417	+				-0.3
2,880,417	+				-0.3
2,880,449	+				-1.0
2,880,449	+				+1.5