Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13140

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,815,689	-		DZA65_RS13130	0.86	+0.5
2,815,689	-		DZA65_RS13130	0.86	-0.2
2,815,689	-		DZA65_RS13130	0.86	+0.3
2,815,763	+				+0.8
2,815,763	+				-0.1
2,815,764	-				-1.7
2,815,764	-				+0.5
2,815,764	-				+0.5
2,815,778	+				+0.3
2,815,829	+				+0.0
2,815,829	+				-1.7
2,815,829	+				-0.2
2,815,830	-				-0.0
2,815,830	-				-1.3
2,815,830	-				-0.7
2,815,830	-				-1.2
2,815,830	-				-2.1
2,815,830	-				-0.1
2,815,830	-				-0.7
2,815,832	+				+1.5
2,815,832	+				-0.6
2,815,833	-				-0.2
2,815,833	-				-2.3
2,815,833	-				-1.2
2,815,833	-				+1.3
2,815,833	-				-1.1
2,815,833	-				-1.7
2,815,835	+				-0.7
2,815,835	+				-2.5
2,815,835	+				+0.1
2,815,835	+				+0.3
2,815,835	+				+0.6
2,815,835	+				+0.5
2,815,835	+				-1.4
2,815,835	+				+1.5
2,815,836	-				-1.3
2,815,836	-				-0.2
2,815,836	-				-0.9
2,815,836	-				-1.3
2,815,836	-				-0.7
2,815,838	+				-1.1
2,815,839	-				-0.3
2,815,839	-				-0.7
2,815,854	+				+0.1
2,815,854	+				+0.8
2,815,854	+				+0.0
2,815,854	+				-2.7
2,815,855	-				-0.2
2,815,855	-				+1.3
2,815,855	-				-1.1
2,815,858	-				-0.5
2,815,869	+				+0.3
2,815,869	+				-0.9
2,815,869	+				-1.0
2,815,870	-				-0.8
2,815,870	-				-0.6
2,815,870	-				+0.7
2,815,870	-				-1.3
2,815,887	+				-0.1
2,815,887	+				-1.1
2,815,887	+				+0.5
2,815,887	+				-0.5
2,815,887	+				-0.3
2,815,888	-				-1.4
2,815,888	-				-1.7
2,815,905	+				-0.3
2,815,906	-				+0.4
2,815,923	+				+0.5
2,815,923	+				-1.5
2,815,924	-				-1.5
2,815,924	-				+0.9
2,815,929	+				-0.5
2,815,929	+				-0.1
2,815,929	+				-0.0
2,815,930	-				+0.7
2,815,930	-				+2.4
2,815,930	-				-1.1
2,815,930	-				-0.6
2,815,941	+				-0.3
2,815,941	+				-0.3
2,815,941	+				-0.7
2,815,941	+				-0.3
2,815,941	+				-0.7
2,815,941	+				-0.6
2,815,942	-				+1.8
2,815,942	-				-0.2
2,815,942	-				-0.3
2,815,969	+				-2.2
2,816,046	+				-0.7
2,816,120	+				-1.3
2,816,121	-				-0.7
2,816,164	+		DZA65_RS13135	0.26	+0.7
2,816,165	-		DZA65_RS13135	0.27	+0.7
2,816,165	-		DZA65_RS13135	0.27	-0.1
2,816,224	+				-2.1
2,816,230	+				+0.2
2,816,230	+				-0.5
2,816,230	+				+0.8
2,816,230	+				-0.9
2,816,230	+				-1.3
2,816,233	+				-1.0
2,816,233	+				-0.2
2,816,233	+				-2.1
2,816,233	+				-0.4
2,816,234	-				-1.5
2,816,234	-				+0.7
2,816,234	-				-1.1
2,816,243	+				-2.3
2,816,243	+				+0.3
2,816,243	+				-1.3
2,816,243	+				+0.1
2,816,244	-				-0.2
2,816,244	-				+0.7
2,816,244	-				+0.0
2,816,325	-				+0.5
2,816,330	+				-1.0
2,816,330	+				-2.3
2,816,330	+				-3.2
2,816,331	-				+0.8
2,816,331	-				-0.3
2,816,331	-				+1.3
2,816,378	+				-0.1
2,816,378	+				-2.1
2,816,379	-				-0.1
2,816,409	-				+1.3
2,816,438	+				-0.1
2,816,438	+				+0.0
2,816,438	+				-2.3
2,816,438	+				-2.3
2,816,438	+				-1.3
2,816,439	-				+0.1
2,816,439	-				-0.4
2,816,477	+				-0.8
2,816,477	+				+2.8
2,816,478	-				+0.3
2,816,478	-				+0.3
2,816,478	-				+0.3
2,816,562	-				-0.4
2,816,565	+				+0.7
2,816,565	+				+1.3
2,816,565	+				-0.1
2,816,574	-				-0.1
2,816,585	+				-0.1
2,816,585	+				-1.7
2,816,585	+				+0.8
2,816,585	+				-0.1
2,816,585	+				-1.9
2,816,586	-				+2.7
2,816,590	+				-0.0
2,816,590	+				-1.6
2,816,591	-				+0.3
2,816,602	+				-0.7
2,816,602	+				+0.3
2,816,607	+				-0.1
2,816,607	+				+0.6
2,816,607	+				-0.3
2,816,608	-				+2.3
2,816,614	+				+0.7
2,816,614	+				-0.2
2,816,615	-				+0.6
2,816,615	-				-0.1
2,816,615	-				-1.2
2,816,615	-				+0.4
2,816,632	+				+1.6
2,816,633	-				+1.4
2,816,633	-				-0.3
2,816,633	-				+0.2
2,816,687	+				+0.7
2,816,731	-				-0.7
2,816,768	-		DZA65_RS13140	0.13	+0.0
2,816,768	-		DZA65_RS13140	0.13	-0.9
2,816,768	-		DZA65_RS13140	0.13	+0.1
2,816,852	-		DZA65_RS13140	0.21	-0.1
2,816,852	-		DZA65_RS13140	0.21	+0.5
2,816,852	-		DZA65_RS13140	0.21	+0.4
2,816,891	-		DZA65_RS13140	0.25	+1.0
2,816,891	-		DZA65_RS13140	0.25	+0.3
2,816,902	+		DZA65_RS13140	0.26	-1.5
2,816,904	+		DZA65_RS13140	0.26	-0.5
2,816,904	+		DZA65_RS13140	0.26	+0.4
2,816,904	+		DZA65_RS13140	0.26	+1.0
2,816,904	+		DZA65_RS13140	0.26	-0.1
2,816,904	+		DZA65_RS13140	0.26	-1.1
2,816,904	+		DZA65_RS13140	0.26	+1.6
2,816,905	-		DZA65_RS13140	0.26	+0.3
2,816,905	-		DZA65_RS13140	0.26	-1.1
2,816,931	+		DZA65_RS13140	0.29	+3.1
2,816,931	+		DZA65_RS13140	0.29	-0.5
2,816,931	+		DZA65_RS13140	0.29	-0.1
2,816,932	-		DZA65_RS13140	0.29	-1.7
2,816,953	+		DZA65_RS13140	0.31	-0.3
2,816,953	+		DZA65_RS13140	0.31	-0.2
2,816,953	+		DZA65_RS13140	0.31	+0.8
2,816,954	-		DZA65_RS13140	0.31	+0.0
2,816,990	+		DZA65_RS13140	0.35	+0.8
2,817,044	-		DZA65_RS13140	0.40	+0.1
2,817,044	-		DZA65_RS13140	0.40	+1.3
2,817,133	+		DZA65_RS13140	0.49	+1.6
2,817,148	+		DZA65_RS13140	0.50	-1.6
2,817,149	-		DZA65_RS13140	0.50	-0.1
2,817,224	-		DZA65_RS13140	0.57	-0.2
2,817,281	+		DZA65_RS13140	0.63	+0.1
2,817,282	-				+2.4
2,817,282	-		DZA65_RS13140	0.63	-0.9
2,817,396	+		DZA65_RS13140	0.74	+0.6
2,817,396	+		DZA65_RS13140	0.74	-0.1
2,817,438	+		DZA65_RS13140	0.78	+1.5
2,817,438	+		DZA65_RS13140	0.78	+1.5
2,817,438	+		DZA65_RS13140	0.78	+0.8
2,817,438	+		DZA65_RS13140	0.78	+1.0
2,817,439	-		DZA65_RS13140	0.78	+0.9
2,817,464	+				+1.5
2,817,464	+		DZA65_RS13140	0.81	+0.8
2,817,464	+		DZA65_RS13140	0.81	+1.1
2,817,464	+		DZA65_RS13140	0.81	-1.1
2,817,464	+		DZA65_RS13140	0.81	-0.7
2,817,464	+		DZA65_RS13140	0.81	+0.8
2,817,465	-		DZA65_RS13140	0.81	+0.1
2,817,465	-		DZA65_RS13140	0.81	+1.3
2,817,465	-		DZA65_RS13140	0.81	+0.6
2,817,465	-		DZA65_RS13140	0.81	-0.6
2,817,465	-		DZA65_RS13140	0.81	-0.3
2,817,465	-		DZA65_RS13140	0.81	-0.1
2,817,465	-		DZA65_RS13140	0.81	+0.6
2,817,465	-				+1.8
2,817,465	-		DZA65_RS13140	0.81	-0.1
2,817,465	-		DZA65_RS13140	0.81	+1.1
2,817,465	-		DZA65_RS13140	0.81	+3.1
2,817,465	-		DZA65_RS13140	0.81	+0.3
2,817,465	-		DZA65_RS13140	0.81	-0.2
2,817,478	+		DZA65_RS13140	0.82	-0.2
2,817,484	-		DZA65_RS13140	0.83	-1.0
2,817,588	+				-0.1
2,817,589	-				+1.1
2,817,679	-				-0.5
2,817,722	+				+0.3
2,817,723	-				-0.1
2,817,723	-				+1.7
2,817,723	-				-0.7
2,817,776	-				-0.5
2,817,813	+				-1.7
2,817,814	-				+0.4
2,817,814	-				-0.1
2,817,814	-				+0.3
2,817,814	-				+1.8
2,817,819	+				-1.5
2,817,819	+				-0.9
2,817,819	+				-1.0
2,817,819	+				-0.7
2,817,819	+				+1.3
2,817,819	+				-0.7
2,817,819	+				-1.3
2,817,819	+				+1.3
2,817,820	-				-0.6
2,817,820	-				+1.0
2,817,820	-				+0.1
2,817,820	-				-0.5
2,817,820	-				-0.7
2,817,820	-				+0.4
2,817,820	-				-0.2
2,817,820	-				-0.7
2,817,820	-				-0.2
2,817,820	-				-0.0
2,817,820	-				-0.5
2,817,840	+				+0.4
2,817,840	+				-0.3
2,817,840	+				-0.2
2,817,840	+				-0.5
2,817,891	-				+0.8
2,817,934	+				+0.5
2,817,934	+				-1.3
2,817,934	+				-1.3
2,817,935	-				+0.3
2,817,935	-				-0.8
2,817,935	-				+0.5
2,817,962	+				-1.7
2,817,962	+				+1.1
2,817,963	-				+1.1
2,817,987	+				-2.9
2,818,018	+				+0.1
2,818,019	-				+0.2
2,818,026	-				+0.3
2,818,026	-				+1.1
2,818,035	+				-1.3
2,818,036	-				+1.3
2,818,036	-				+0.3
2,818,082	+				+1.1
2,818,082	+				-2.1
2,818,083	-				+0.5
2,818,083	-				-0.6
2,818,095	+				-0.2
2,818,095	+				-1.9
2,818,095	+				-0.1
2,818,095	+				-1.2
2,818,095	+				+0.8
2,818,095	+				+0.5
2,818,095	+				-1.7
2,818,096	-				-1.9
2,818,096	-				+0.4
2,818,096	-				+0.3
2,818,096	-				+0.7
2,818,096	-				-1.5
2,818,096	-				-0.5
2,818,096	-				+0.4
2,818,123	+				-0.2
2,818,124	-				-0.7
2,818,124	-				-0.0
2,818,196	+				+0.0
2,818,196	+				+0.3
2,818,197	-				+0.1
2,818,217	+		DZA65_RS13145	0.12	-0.6
2,818,217	+		DZA65_RS13145	0.12	+1.2
2,818,217	+		DZA65_RS13145	0.12	-1.3
2,818,221	+		DZA65_RS13145	0.12	+0.4
2,818,221	+		DZA65_RS13145	0.12	+0.4
2,818,221	+		DZA65_RS13145	0.12	-1.1
2,818,221	+		DZA65_RS13145	0.12	+0.7
2,818,221	+		DZA65_RS13145	0.12	+0.3
2,818,222	-		DZA65_RS13145	0.12	-0.4
2,818,222	-		DZA65_RS13145	0.12	-0.6
2,818,222	-		DZA65_RS13145	0.12	+0.3
2,818,231	+		DZA65_RS13145	0.13	+1.7
2,818,266	+		DZA65_RS13145	0.16	+0.7
2,818,266	+		DZA65_RS13145	0.16	-1.4
2,818,266	+		DZA65_RS13145	0.16	-1.1
2,818,266	+		DZA65_RS13145	0.16	-2.1
2,818,266	+		DZA65_RS13145	0.16	+0.3
2,818,266	+		DZA65_RS13145	0.16	-1.6
2,818,266	+		DZA65_RS13145	0.16	+1.0
2,818,266	+		DZA65_RS13145	0.16	-0.7
2,818,266	+		DZA65_RS13145	0.16	+0.5
2,818,266	+		DZA65_RS13145	0.16	-0.5
2,818,266	+		DZA65_RS13145	0.16	-0.1
2,818,266	+		DZA65_RS13145	0.16	-0.4
2,818,267	-		DZA65_RS13145	0.16	+0.9
2,818,267	-		DZA65_RS13145	0.16	-1.7
2,818,267	-		DZA65_RS13145	0.16	+0.8
2,818,267	-				-0.5
2,818,267	-		DZA65_RS13145	0.16	-0.7
2,818,267	-		DZA65_RS13145	0.16	-1.6
2,818,267	-		DZA65_RS13145	0.16	+0.4
2,818,268	+		DZA65_RS13145	0.16	+0.3
2,818,268	+		DZA65_RS13145	0.16	-0.1
2,818,268	+		DZA65_RS13145	0.16	+0.3
2,818,268	+		DZA65_RS13145	0.16	+0.6
2,818,269	-		DZA65_RS13145	0.16	+0.3
2,818,269	-		DZA65_RS13145	0.16	-1.7
2,818,269	-		DZA65_RS13145	0.16	-0.3
2,818,269	-		DZA65_RS13145	0.16	+0.7
2,818,365	-		DZA65_RS13145	0.24	-0.3
2,818,370	-		DZA65_RS13145	0.25	-1.2
2,818,440	+		DZA65_RS13145	0.31	-0.9
2,818,440	+		DZA65_RS13145	0.31	-1.0
2,818,440	+		DZA65_RS13145	0.31	-0.7
2,818,441	-		DZA65_RS13145	0.31	-0.0
2,818,482	+		DZA65_RS13145	0.35	-0.1
2,818,482	+		DZA65_RS13145	0.35	-0.0
2,818,482	+		DZA65_RS13145	0.35	-0.5
2,818,482	+		DZA65_RS13145	0.35	+0.3
2,818,482	+		DZA65_RS13145	0.35	-0.9
2,818,483	-		DZA65_RS13145	0.35	-0.6
2,818,483	-		DZA65_RS13145	0.35	+0.6
2,818,483	-		DZA65_RS13145	0.35	-0.6
2,818,483	-		DZA65_RS13145	0.35	+1.5
2,818,484	+		DZA65_RS13145	0.35	+0.3
2,818,484	+		DZA65_RS13145	0.35	+0.8
2,818,484	+		DZA65_RS13145	0.35	+0.3
2,818,484	+		DZA65_RS13145	0.35	-0.9
2,818,484	+		DZA65_RS13145	0.35	-0.7
2,818,484	+		DZA65_RS13145	0.35	-0.7
2,818,484	+		DZA65_RS13145	0.35	-0.6
2,818,484	+		DZA65_RS13145	0.35	+0.3
2,818,484	+		DZA65_RS13145	0.35	-1.7
2,818,484	+		DZA65_RS13145	0.35	-0.9
2,818,485	-		DZA65_RS13145	0.35	-0.6
2,818,485	-		DZA65_RS13145	0.35	+0.5
2,818,485	-		DZA65_RS13145	0.35	+0.3
2,818,485	-		DZA65_RS13145	0.35	-2.1
2,818,485	-		DZA65_RS13145	0.35	-0.2
2,818,485	-		DZA65_RS13145	0.35	-0.0
2,818,485	-		DZA65_RS13145	0.35	-0.2
2,818,491	+		DZA65_RS13145	0.35	+0.0
2,818,504	-		DZA65_RS13145	0.37	+0.5
2,818,586	+		DZA65_RS13145	0.44	-0.6