Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12785

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,735,410	+		DZA65_RS12780	0.42	+0.1
2,735,410	+		DZA65_RS12780	0.42	-1.1
2,735,410	+		DZA65_RS12780	0.42	-0.3
2,735,411	-		DZA65_RS12780	0.42	+0.0
2,735,411	-		DZA65_RS12780	0.42	+1.2
2,735,411	-		DZA65_RS12780	0.42	-2.4
2,735,413	+		DZA65_RS12780	0.42	-1.9
2,735,413	+		DZA65_RS12780	0.42	-1.0
2,735,414	-		DZA65_RS12780	0.42	-0.8
2,735,414	-		DZA65_RS12780	0.42	-1.1
2,735,414	-		DZA65_RS12780	0.42	+1.2
2,735,431	+		DZA65_RS12780	0.43	-0.1
2,735,431	+		DZA65_RS12780	0.43	-0.2
2,735,431	+		DZA65_RS12780	0.43	-1.9
2,735,432	-		DZA65_RS12780	0.43	-0.2
2,735,432	-		DZA65_RS12780	0.43	-0.7
2,735,434	+		DZA65_RS12780	0.43	-1.1
2,735,434	+		DZA65_RS12780	0.43	+1.0
2,735,435	-		DZA65_RS12780	0.43	-1.4
2,735,435	-		DZA65_RS12780	0.43	+2.5
2,735,435	-		DZA65_RS12780	0.43	-0.1
2,735,435	-		DZA65_RS12780	0.43	-1.2
2,735,435	-		DZA65_RS12780	0.43	-0.5
2,735,435	-		DZA65_RS12780	0.43	-0.8
2,735,435	-		DZA65_RS12780	0.43	+2.5
2,735,435	-		DZA65_RS12780	0.43	-0.4
2,735,435	-		DZA65_RS12780	0.43	-1.4
2,735,435	-		DZA65_RS12780	0.43	-0.4
2,735,435	-		DZA65_RS12780	0.43	+1.0
2,735,451	-				+1.2
2,735,542	+		DZA65_RS12780	0.50	-1.1
2,735,565	-		DZA65_RS12780	0.52	-1.6
2,735,569	+		DZA65_RS12780	0.52	+0.0
2,735,570	-		DZA65_RS12780	0.52	-1.0
2,735,579	-		DZA65_RS12780	0.52	+0.0
2,735,616	+		DZA65_RS12780	0.55	-0.9
2,735,633	-		DZA65_RS12780	0.56	+0.1
2,735,633	-		DZA65_RS12780	0.56	+1.0
2,735,633	-		DZA65_RS12780	0.56	+1.0
2,735,636	+		DZA65_RS12780	0.56	+0.5
2,735,636	+		DZA65_RS12780	0.56	-0.1
2,735,636	+		DZA65_RS12780	0.56	+1.6
2,735,636	+		DZA65_RS12780	0.56	-0.0
2,735,636	+		DZA65_RS12780	0.56	+0.4
2,735,636	+		DZA65_RS12780	0.56	+0.1
2,735,637	-		DZA65_RS12780	0.56	-1.3
2,735,637	-		DZA65_RS12780	0.56	+0.3
2,735,637	-		DZA65_RS12780	0.56	-0.6
2,735,637	-		DZA65_RS12780	0.56	+0.2
2,735,637	-		DZA65_RS12780	0.56	+0.6
2,735,637	-		DZA65_RS12780	0.56	-0.8
2,735,637	-		DZA65_RS12780	0.56	+1.2
2,735,638	+		DZA65_RS12780	0.56	-1.0
2,735,638	+		DZA65_RS12780	0.56	+0.5
2,735,638	+		DZA65_RS12780	0.56	+1.0
2,735,639	-		DZA65_RS12780	0.56	-0.1
2,735,639	-		DZA65_RS12780	0.56	-1.0
2,735,639	-		DZA65_RS12780	0.56	-0.4
2,735,644	+		DZA65_RS12780	0.57	-1.6
2,735,644	+		DZA65_RS12780	0.57	-0.9
2,735,645	-		DZA65_RS12780	0.57	-0.3
2,735,688	+		DZA65_RS12780	0.59	+0.7
2,735,689	-		DZA65_RS12780	0.60	+0.3
2,735,689	-		DZA65_RS12780	0.60	+0.2
2,735,723	+		DZA65_RS12780	0.62	+0.6
2,735,723	+		DZA65_RS12780	0.62	+1.0
2,735,723	+		DZA65_RS12780	0.62	-0.7
2,735,723	+		DZA65_RS12780	0.62	-0.1
2,735,723	+		DZA65_RS12780	0.62	+2.6
2,735,724	-		DZA65_RS12780	0.62	-0.5
2,735,724	-		DZA65_RS12780	0.62	+1.2
2,735,795	-		DZA65_RS12780	0.66	-1.0
2,735,795	-		DZA65_RS12780	0.66	-0.8
2,735,795	-		DZA65_RS12780	0.66	+0.1
2,735,822	-				+0.5
2,735,822	-		DZA65_RS12780	0.68	-1.2
2,735,856	+		DZA65_RS12780	0.70	-0.6
2,735,857	-		DZA65_RS12780	0.70	-0.2
2,735,857	-		DZA65_RS12780	0.70	-0.8
2,735,866	+		DZA65_RS12780	0.71	-0.2
2,735,867	-		DZA65_RS12780	0.71	-0.4
2,735,867	-		DZA65_RS12780	0.71	+0.6
2,735,890	+		DZA65_RS12780	0.72	+0.3
2,735,891	-		DZA65_RS12780	0.73	+0.2
2,735,891	-		DZA65_RS12780	0.73	+1.0
2,735,891	-		DZA65_RS12780	0.73	-0.4
2,735,973	+		DZA65_RS12780	0.78	-3.1
2,735,973	+		DZA65_RS12780	0.78	+0.1
2,735,974	-		DZA65_RS12780	0.78	-0.4
2,735,977	+		DZA65_RS12780	0.78	-2.4
2,735,977	+		DZA65_RS12780	0.78	-1.1
2,735,978	-		DZA65_RS12780	0.78	-0.1
2,735,978	-		DZA65_RS12780	0.78	+0.8
2,735,993	+		DZA65_RS12780	0.79	+0.6
2,735,993	+		DZA65_RS12780	0.79	-2.6
2,735,993	+		DZA65_RS12780	0.79	-2.4
2,735,993	+		DZA65_RS12780	0.79	-0.6
2,735,993	+		DZA65_RS12780	0.79	-0.3
2,735,994	-		DZA65_RS12780	0.79	-0.8
2,736,001	+		DZA65_RS12780	0.80	+0.8
2,736,001	+		DZA65_RS12780	0.80	-0.3
2,736,063	+		DZA65_RS12780	0.84	+0.1
2,736,064	-		DZA65_RS12780	0.84	+0.6
2,736,064	-		DZA65_RS12780	0.84	+0.2
2,736,064	-		DZA65_RS12780	0.84	-2.1
2,736,107	-		DZA65_RS12780	0.86	+1.1
2,736,179	-				+0.1
2,736,248	+				-1.2
2,736,249	-				+0.5
2,736,249	-				+0.2
2,736,260	+				+0.7
2,736,260	+				-0.9
2,736,260	+				-1.2
2,736,261	-				+0.1
2,736,261	-				-0.4
2,736,297	-				+0.4
2,736,297	-				+0.1
2,736,299	+				-0.5
2,736,299	+				+1.4
2,736,307	+				+2.3
2,736,307	+				+1.0
2,736,307	+				+0.6
2,736,307	+				+1.2
2,736,307	+				+1.6
2,736,308	-				+0.6
2,736,308	-				-0.4
2,736,308	-				-2.1
2,736,308	-				-1.0
2,736,308	-				-0.2
2,736,371	-				+1.4
2,736,376	+				+0.5
2,736,376	+				+0.8
2,736,376	+				+0.2
2,736,377	-				+2.2
2,736,377	-				+0.0
2,736,377	-				+0.6
2,736,377	-				-1.5
2,736,377	-				+0.2
2,736,380	+				-1.2
2,736,380	+				+1.0
2,736,380	+				-1.4
2,736,380	+				-0.4
2,736,380	+				-0.5
2,736,380	+				+0.6
2,736,380	+				+0.9
2,736,380	+				+0.2
2,736,380	+				-1.4
2,736,380	+				+0.1
2,736,380	+				-0.1
2,736,380	+				-1.4
2,736,380	+				+0.8
2,736,381	-				+0.7
2,736,381	-				-0.1
2,736,381	-				+0.4
2,736,381	-				-1.0
2,736,381	-				+0.6
2,736,381	-				+1.2
2,736,381	-				+1.6
2,736,381	-				-0.0
2,736,381	-				+1.3
2,736,470	+				+0.6
2,736,470	+				+0.0
2,736,470	+				-0.5
2,736,485	+		DZA65_RS12785	0.12	+2.8
2,736,485	+		DZA65_RS12785	0.12	+0.4
2,736,485	+		DZA65_RS12785	0.12	-1.0
2,736,485	+		DZA65_RS12785	0.12	+0.1
2,736,485	+		DZA65_RS12785	0.12	+0.8
2,736,485	+		DZA65_RS12785	0.12	-0.0
2,736,485	+		DZA65_RS12785	0.12	+0.7
2,736,486	-		DZA65_RS12785	0.12	-0.5
2,736,486	-		DZA65_RS12785	0.12	+0.2
2,736,486	-		DZA65_RS12785	0.12	-1.6
2,736,555	+		DZA65_RS12785	0.22	+1.0
2,736,555	+		DZA65_RS12785	0.22	-0.1
2,736,618	+		DZA65_RS12785	0.30	+1.2
2,736,619	-		DZA65_RS12785	0.30	-1.1
2,736,619	-		DZA65_RS12785	0.30	-0.5
2,736,643	+		DZA65_RS12785	0.34	-0.5
2,736,643	+		DZA65_RS12785	0.34	-2.1
2,736,643	+		DZA65_RS12785	0.34	-0.5
2,736,643	+		DZA65_RS12785	0.34	+0.1
2,736,644	-		DZA65_RS12785	0.34	+1.1
2,736,644	-		DZA65_RS12785	0.34	+0.2
2,736,644	-		DZA65_RS12785	0.34	+0.2
2,736,644	-		DZA65_RS12785	0.34	-1.6
2,736,644	-		DZA65_RS12785	0.34	-1.4
2,736,644	-		DZA65_RS12785	0.34	-0.3
2,736,644	-		DZA65_RS12785	0.34	+0.5
2,736,644	-		DZA65_RS12785	0.34	+1.1
2,736,724	+		DZA65_RS12785	0.45	-0.4
2,736,724	+		DZA65_RS12785	0.45	+1.1
2,736,724	+		DZA65_RS12785	0.45	-1.4
2,736,724	+		DZA65_RS12785	0.45	-0.4
2,736,725	-		DZA65_RS12785	0.45	-1.4
2,736,725	-		DZA65_RS12785	0.45	-0.8
2,736,725	-		DZA65_RS12785	0.45	+0.2
2,736,750	+		DZA65_RS12785	0.49	+1.6
2,736,750	+		DZA65_RS12785	0.49	+0.6
2,736,799	+		DZA65_RS12785	0.55	+0.5
2,736,799	+		DZA65_RS12785	0.55	+0.0
2,736,800	-		DZA65_RS12785	0.56	+0.1
2,736,814	-		DZA65_RS12785	0.57	+0.9
2,736,860	+		DZA65_RS12785	0.64	-0.1
2,736,987	+		DZA65_RS12785	0.82	+0.2
2,736,987	+		DZA65_RS12785	0.82	+2.2
2,736,988	-		DZA65_RS12785	0.82	-1.0
2,736,988	-		DZA65_RS12785	0.82	+0.1
2,737,010	-		DZA65_RS12785	0.85	-0.4
2,737,092	+				+0.1
2,737,182	+				-0.8
2,737,182	+				-0.1
2,737,183	-				-0.5
2,737,183	-				+0.1
2,737,183	-				-1.5
2,737,183	-				-1.4
2,737,192	+				-0.4
2,737,192	+				-1.8
2,737,192	+				-1.2
2,737,192	+				+0.8
2,737,192	+				+0.0
2,737,192	+				+0.5
2,737,193	-				+1.8
2,737,193	-				+0.2
2,737,193	-				-1.2
2,737,193	-				-0.2
2,737,193	-				-0.4
2,737,195	+				-0.3
2,737,195	+				+0.7
2,737,195	+				+0.4
2,737,196	-				+0.2
2,737,196	-				+0.0
2,737,202	-				-0.4
2,737,314	+		DZA65_RS12790	0.13	-0.0
2,737,314	+		DZA65_RS12790	0.13	-0.1
2,737,314	+		DZA65_RS12790	0.13	+1.2
2,737,314	+		DZA65_RS12790	0.13	-0.7
2,737,314	+		DZA65_RS12790	0.13	+0.2
2,737,315	-		DZA65_RS12790	0.13	+0.2
2,737,315	-		DZA65_RS12790	0.13	-0.0
2,737,315	-		DZA65_RS12790	0.13	+1.2
2,737,334	+		DZA65_RS12790	0.14	-0.4
2,737,334	+		DZA65_RS12790	0.14	-0.3
2,737,334	+		DZA65_RS12790	0.14	+0.7
2,737,335	-		DZA65_RS12790	0.14	+0.7
2,737,335	-		DZA65_RS12790	0.14	+0.4
2,737,335	-		DZA65_RS12790	0.14	+0.5
2,737,340	+		DZA65_RS12790	0.15	-0.4
2,737,340	+		DZA65_RS12790	0.15	+0.1
2,737,415	+		DZA65_RS12790	0.20	-2.6
2,737,415	+		DZA65_RS12790	0.20	-1.4
2,737,415	+		DZA65_RS12790	0.20	-0.4
2,737,415	+		DZA65_RS12790	0.20	+0.2
2,737,415	+		DZA65_RS12790	0.20	-0.9
2,737,415	+		DZA65_RS12790	0.20	-0.1
2,737,415	+		DZA65_RS12790	0.20	+0.8
2,737,415	+		DZA65_RS12790	0.20	-0.8
2,737,416	-		DZA65_RS12790	0.20	+0.5
2,737,416	-		DZA65_RS12790	0.20	-0.4
2,737,416	-		DZA65_RS12790	0.20	-0.5
2,737,416	-		DZA65_RS12790	0.20	-1.5
2,737,416	-		DZA65_RS12790	0.20	+0.2
2,737,416	-		DZA65_RS12790	0.20	-0.1
2,737,416	-		DZA65_RS12790	0.20	+0.6
2,737,417	+		DZA65_RS12790	0.20	+0.1
2,737,551	-		DZA65_RS12790	0.30	+0.0
2,737,551	-		DZA65_RS12790	0.30	-0.6
2,737,551	-		DZA65_RS12790	0.30	-0.8
2,737,585	+		DZA65_RS12790	0.32	-0.4
2,737,585	+		DZA65_RS12790	0.32	-1.6
2,737,585	+		DZA65_RS12790	0.32	-0.4
2,737,585	+		DZA65_RS12790	0.32	-0.8
2,737,585	+		DZA65_RS12790	0.32	-0.1
2,737,585	+		DZA65_RS12790	0.32	+0.5
2,737,585	+		DZA65_RS12790	0.32	-0.3
2,737,586	-		DZA65_RS12790	0.32	+0.8
2,737,586	-		DZA65_RS12790	0.32	-1.0
2,737,586	-		DZA65_RS12790	0.32	-0.1
2,737,747	+		DZA65_RS12790	0.43	+0.8
2,737,747	+		DZA65_RS12790	0.43	-0.6
2,737,747	+		DZA65_RS12790	0.43	+0.8
2,737,747	+		DZA65_RS12790	0.43	-0.2
2,737,747	+		DZA65_RS12790	0.43	-3.1
2,737,747	+		DZA65_RS12790	0.43	-0.8
2,737,748	-		DZA65_RS12790	0.43	-0.8
2,737,813	+		DZA65_RS12790	0.48	-0.3
2,737,813	+		DZA65_RS12790	0.48	+0.2
2,737,814	-		DZA65_RS12790	0.48	-0.4
2,737,814	-		DZA65_RS12790	0.48	+0.9
2,737,937	+		DZA65_RS12790	0.57	-1.4
2,737,942	+		DZA65_RS12790	0.57	-1.5
2,737,942	+		DZA65_RS12790	0.57	-1.9
2,737,942	+		DZA65_RS12790	0.57	-1.4
2,737,942	+		DZA65_RS12790	0.57	-0.9
2,737,942	+		DZA65_RS12790	0.57	-1.1
2,737,942	+		DZA65_RS12790	0.57	-0.3
2,737,943	-		DZA65_RS12790	0.57	+1.1
2,737,943	-		DZA65_RS12790	0.57	+0.9
2,737,943	-		DZA65_RS12790	0.57	-1.0
2,737,943	-		DZA65_RS12790	0.57	-0.3
2,737,943	-		DZA65_RS12790	0.57	+0.6
2,737,943	-		DZA65_RS12790	0.57	-0.5
2,737,943	-		DZA65_RS12790	0.57	-0.8
2,737,943	-		DZA65_RS12790	0.57	-0.4
2,737,972	+		DZA65_RS12790	0.59	+0.9
2,737,973	-		DZA65_RS12790	0.59	+0.6
2,738,005	+		DZA65_RS12790	0.62	-0.0
2,738,006	-		DZA65_RS12790	0.62	+0.8
2,738,055	+		DZA65_RS12790	0.65	-0.1
2,738,055	+		DZA65_RS12790	0.65	-0.5
2,738,055	+		DZA65_RS12790	0.65	+2.2
2,738,055	+		DZA65_RS12790	0.65	+0.4
2,738,055	+		DZA65_RS12790	0.65	+0.0
2,738,055	+		DZA65_RS12790	0.65	+0.1
2,738,055	+		DZA65_RS12790	0.65	-1.4
2,738,056	-		DZA65_RS12790	0.65	-0.1
2,738,056	-		DZA65_RS12790	0.65	-0.8
2,738,056	-		DZA65_RS12790	0.65	+0.3
2,738,056	-		DZA65_RS12790	0.65	-0.3
2,738,056	-		DZA65_RS12790	0.65	-2.1
2,738,056	-		DZA65_RS12790	0.65	-0.5
2,738,083	+		DZA65_RS12790	0.67	-0.2
2,738,083	+		DZA65_RS12790	0.67	-0.4
2,738,083	+		DZA65_RS12790	0.67	+0.2
2,738,083	+		DZA65_RS12790	0.67	-0.2
2,738,083	+		DZA65_RS12790	0.67	+0.5
2,738,083	+		DZA65_RS12790	0.67	+0.8
2,738,089	+		DZA65_RS12790	0.67	+0.8
2,738,089	+		DZA65_RS12790	0.67	+0.1
2,738,089	+		DZA65_RS12790	0.67	-0.6
2,738,090	-		DZA65_RS12790	0.68	+1.0
2,738,090	-		DZA65_RS12790	0.68	+1.0