Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12615

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,700,428	+		DZA65_RS12610	0.39	-2.6
2,700,429	-		DZA65_RS12610	0.39	-0.5
2,700,429	-		DZA65_RS12610	0.39	-0.6
2,700,439	+		DZA65_RS12610	0.40	-0.1
2,700,449	-		DZA65_RS12610	0.41	+0.6
2,700,516	-		DZA65_RS12610	0.46	-2.9
2,700,516	-		DZA65_RS12610	0.46	-1.4
2,700,862	+		DZA65_RS12610	0.76	+1.0
2,700,965	+		DZA65_RS12610	0.85	-1.8
2,700,966	-		DZA65_RS12610	0.85	-0.4
2,700,966	-		DZA65_RS12610	0.85	-0.3
2,700,966	-		DZA65_RS12610	0.85	-0.4
2,700,966	-		DZA65_RS12610	0.85	-0.6
2,700,970	+				+1.6
2,700,970	+		DZA65_RS12610	0.85	-2.8
2,700,970	+		DZA65_RS12610	0.85	-1.4
2,700,971	-		DZA65_RS12610	0.86	-1.2
2,700,971	-		DZA65_RS12610	0.86	-1.1
2,700,971	-		DZA65_RS12610	0.86	+1.1
2,701,009	+		DZA65_RS12610	0.89	-1.1
2,701,054	+				+0.2
2,701,054	+				-2.7
2,701,055	-				+1.2
2,701,058	+				+0.2
2,701,058	+				+0.4
2,701,067	-				-1.9
2,701,114	+				-0.2
2,701,115	-				+0.2
2,701,118	+				-0.8
2,701,118	+				-0.6
2,701,118	+				-1.4
2,701,118	+				+0.7
2,701,118	+				-0.5
2,701,118	+				+0.2
2,701,118	+				+0.8
2,701,118	+				+0.2
2,701,119	-				-1.2
2,701,119	-				+1.0
2,701,119	-				-0.0
2,701,119	-				+0.7
2,701,193	-				-0.2
2,701,203	+				+0.2
2,701,203	+				-0.4
2,701,203	+				+0.1
2,701,203	+				-0.8
2,701,204	-				+0.5
2,701,204	-				-1.5
2,701,204	-				+0.0
2,701,204	-				-0.8
2,701,205	+				+0.2
2,701,206	-				+0.5
2,701,206	-				-1.0
2,701,262	+				-0.1
2,701,262	+				+0.9
2,701,262	+				-0.7
2,701,263	-				-0.2
2,701,263	-				+1.2
2,701,263	-				-1.6
2,701,264	+				-1.4
2,701,264	+				-0.5
2,701,264	+				+0.8
2,701,264	+				+0.4
2,701,265	-				+1.0
2,701,265	-				+1.6
2,701,265	-				+1.0
2,701,265	-				+0.1
2,701,265	-				-0.2
2,701,265	-				-0.2
2,701,265	-				-0.8
2,701,267	+				-0.6
2,701,267	+				+1.2
2,701,267	+				-0.8
2,701,267	+				-0.0
2,701,267	+				+0.2
2,701,268	-				-0.1
2,701,268	-				-0.8
2,701,268	-				+0.5
2,701,268	-				+0.0
2,701,268	-				-0.3
2,701,268	-				-0.4
2,701,268	-				+0.3
2,701,268	-				-0.4
2,701,268	-				+2.2
2,701,290	+				-0.4
2,701,291	-				+1.5
2,701,291	-				-1.1
2,701,291	-				+1.5
2,701,294	-				-2.8
2,701,302	-				+0.0
2,701,353	-				+1.6
2,701,417	+				+0.2
2,701,425	+				+1.2
2,701,426	-				-0.6
2,701,426	-				-0.6
2,701,453	+				+0.9
2,701,453	+				+0.6
2,701,454	-				+0.7
2,701,461	+				-0.8
2,701,462	-				+0.3
2,701,521	+		DZA65_RS12615	0.13	+0.3
2,701,602	+		DZA65_RS12615	0.19	-0.1
2,701,684	-		DZA65_RS12615	0.25	+0.3
2,701,796	+		DZA65_RS12615	0.34	+0.5
2,701,873	+		DZA65_RS12615	0.39	+0.8
2,701,873	+		DZA65_RS12615	0.39	+1.4
2,701,874	-		DZA65_RS12615	0.39	+1.2
2,701,983	+		DZA65_RS12615	0.47	-0.1
2,701,983	+		DZA65_RS12615	0.47	-0.0
2,701,984	-		DZA65_RS12615	0.48	-0.6
2,701,998	+		DZA65_RS12615	0.49	+0.2
2,702,061	+		DZA65_RS12615	0.53	+0.6
2,702,062	-		DZA65_RS12615	0.53	+0.2
2,702,104	-		DZA65_RS12615	0.56	+0.1
2,702,149	+		DZA65_RS12615	0.60	-1.4
2,702,149	+		DZA65_RS12615	0.60	+0.4
2,702,149	+		DZA65_RS12615	0.60	+0.4
2,702,149	+		DZA65_RS12615	0.60	+0.8
2,702,149	+		DZA65_RS12615	0.60	+0.2
2,702,149	+		DZA65_RS12615	0.60	+0.2
2,702,149	+		DZA65_RS12615	0.60	-1.6
2,702,149	+		DZA65_RS12615	0.60	-0.5
2,702,149	+				-1.8
2,702,149	+		DZA65_RS12615	0.60	+0.9
2,702,150	-		DZA65_RS12615	0.60	-0.8
2,702,150	-		DZA65_RS12615	0.60	-0.7
2,702,150	-		DZA65_RS12615	0.60	+2.8
2,702,150	-		DZA65_RS12615	0.60	-0.4
2,702,150	-				+0.2
2,702,150	-		DZA65_RS12615	0.60	-0.4
2,702,150	-		DZA65_RS12615	0.60	+1.0
2,702,240	+		DZA65_RS12615	0.66	+1.1
2,702,240	+		DZA65_RS12615	0.66	-0.4
2,702,240	+		DZA65_RS12615	0.66	+0.7
2,702,241	-		DZA65_RS12615	0.67	-0.0
2,702,241	-		DZA65_RS12615	0.67	-0.7
2,702,241	-		DZA65_RS12615	0.67	+0.2
2,702,462	+		DZA65_RS12615	0.83	-0.0
2,702,511	-		DZA65_RS12615	0.86	-1.1
2,702,543	+		DZA65_RS12615	0.89	+0.6
2,702,543	+		DZA65_RS12615	0.89	+0.5
2,702,544	-		DZA65_RS12615	0.89	+0.8
2,702,544	-		DZA65_RS12615	0.89	-1.3
2,702,544	-		DZA65_RS12615	0.89	+0.0
2,702,544	-		DZA65_RS12615	0.89	-2.5
2,702,544	-		DZA65_RS12615	0.89	+0.8
2,702,544	-		DZA65_RS12615	0.89	-0.2
2,702,544	-		DZA65_RS12615	0.89	+1.1
2,702,561	-				-0.5
2,702,561	-				-0.4
2,702,561	-				+1.0
2,702,561	-				-0.2
2,702,567	+				-0.8
2,702,588	+				+1.0
2,702,689	+				+0.9
2,702,690	-				-0.4
2,702,692	+				-0.0
2,702,692	+				-0.4
2,702,692	+				+2.3
2,702,693	-				-0.3
2,702,693	-				-1.4
2,702,693	-				-0.4
2,702,693	-				-1.2
2,702,708	+				+1.2
2,702,709	-				+0.2
2,702,709	-				-0.8
2,702,709	-				-2.3
2,702,709	-				-0.4
2,702,747	+				+2.2
2,702,747	+				-0.5
2,702,747	+				-0.6
2,702,752	-				+1.4
2,702,780	+				-0.4
2,702,781	-				-0.8
2,702,782	+				-0.0
2,702,782	+				+0.5
2,702,782	+				-0.4
2,702,782	+				-0.1
2,702,782	+				+0.5
2,702,783	-				-0.8
2,702,783	-				-0.9
2,702,815	-				-0.4
2,702,839	+				-0.4
2,702,882	+				+0.2
2,702,882	+				+0.8
2,702,882	+				+0.4
2,702,883	-				-0.1
2,702,953	-				+0.8
2,702,968	-				-0.1
2,702,991	+				-0.4
2,703,143	+		DZA65_RS12620	0.21	+0.3
2,703,143	+		DZA65_RS12620	0.21	+1.5
2,703,143	+		DZA65_RS12620	0.21	-1.0
2,703,143	+		DZA65_RS12620	0.21	-0.5
2,703,144	-		DZA65_RS12620	0.21	+1.0
2,703,144	-		DZA65_RS12620	0.21	+1.6
2,703,144	-		DZA65_RS12620	0.21	-1.9
2,703,144	-		DZA65_RS12620	0.21	-1.1
2,703,171	-		DZA65_RS12620	0.23	-0.6
2,703,171	-		DZA65_RS12620	0.23	-1.5
2,703,200	-		DZA65_RS12620	0.25	+0.4
2,703,259	-		DZA65_RS12620	0.30	+0.2
2,703,259	-		DZA65_RS12620	0.30	-1.4
2,703,259	-		DZA65_RS12620	0.30	+0.6
2,703,266	+		DZA65_RS12620	0.30	+0.6
2,703,620	-		DZA65_RS12620	0.57	-0.9
2,703,652	+		DZA65_RS12620	0.59	-1.6
2,703,653	-		DZA65_RS12620	0.59	+0.2
2,703,653	-		DZA65_RS12620	0.59	-0.2
2,703,676	+		DZA65_RS12620	0.61	+1.8
2,703,676	+		DZA65_RS12620	0.61	+0.6
2,703,676	+		DZA65_RS12620	0.61	+1.4
2,703,676	+		DZA65_RS12620	0.61	+0.2
2,703,676	+		DZA65_RS12620	0.61	+0.2
2,703,676	+		DZA65_RS12620	0.61	+0.2
2,703,676	+		DZA65_RS12620	0.61	-1.2
2,703,676	+		DZA65_RS12620	0.61	+0.4
2,703,676	+		DZA65_RS12620	0.61	-0.8
2,703,677	-		DZA65_RS12620	0.61	+1.4
2,703,677	-		DZA65_RS12620	0.61	-0.1
2,703,677	-		DZA65_RS12620	0.61	-0.7
2,703,677	-		DZA65_RS12620	0.61	+1.4