Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12570

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,691,810	+		DZA65_RS12555	0.69	-0.4
2,691,877	+		DZA65_RS12555	0.81	+2.1
2,691,877	+		DZA65_RS12555	0.81	-2.2
2,691,878	-		DZA65_RS12555	0.81	-0.3
2,691,882	+		DZA65_RS12555	0.82	-0.0
2,691,882	+		DZA65_RS12555	0.82	-3.1
2,691,882	+		DZA65_RS12555	0.82	+0.4
2,691,882	+		DZA65_RS12555	0.82	-0.6
2,691,882	+		DZA65_RS12555	0.82	+0.7
2,691,883	-		DZA65_RS12555	0.82	+0.2
2,691,883	-		DZA65_RS12555	0.82	-0.1
2,691,883	-		DZA65_RS12555	0.82	-2.9
2,691,883	-		DZA65_RS12555	0.82	-1.4
2,691,929	+				-0.5
2,691,930	-				+0.3
2,691,947	+				-0.3
2,691,947	+				-0.1
2,691,948	-				+0.6
2,691,965	+				+1.0
2,691,965	+				+2.1
2,691,983	+				+1.0
2,691,984	-				+0.2
2,692,102	+				+1.0
2,692,102	+				+0.9
2,692,102	+				-0.6
2,692,102	+				-1.4
2,692,103	-				+0.2
2,692,153	+				+1.2
2,692,154	-				-0.9
2,692,154	-				-0.6
2,692,154	-				-0.4
2,692,170	-				-2.1
2,692,187	-				-0.4
2,692,258	-		DZA65_RS12560	0.41	-0.0
2,692,260	-		DZA65_RS12560	0.42	-0.0
2,692,393	+				-2.4
2,692,393	+				-1.8
2,692,758	+				-0.2
2,692,827	+				+0.3
2,692,828	-				-0.5
2,692,829	+				+0.7
2,692,830	-				+0.6
2,692,889	-				+1.5
2,692,917	-				+0.7
2,692,974	-				-3.6
2,693,012	+		DZA65_RS12570	0.11	-1.8
2,693,012	+		DZA65_RS12570	0.11	-0.2
2,693,013	-		DZA65_RS12570	0.11	+0.6
2,693,025	+		DZA65_RS12570	0.11	-0.5
2,693,026	-		DZA65_RS12570	0.12	-1.2
2,693,026	-		DZA65_RS12570	0.12	+0.5
2,693,084	-		DZA65_RS12570	0.14	+1.2
2,693,084	-		DZA65_RS12570	0.14	-0.4
2,693,084	-		DZA65_RS12570	0.14	-0.6
2,693,091	+		DZA65_RS12570	0.14	-0.0
2,693,092	-		DZA65_RS12570	0.15	+0.1
2,693,092	-		DZA65_RS12570	0.15	-0.1
2,693,123	+		DZA65_RS12570	0.16	+0.4
2,693,123	+		DZA65_RS12570	0.16	+0.1
2,693,123	+		DZA65_RS12570	0.16	-0.5
2,693,201	+		DZA65_RS12570	0.20	-0.8
2,693,202	-		DZA65_RS12570	0.20	+1.0
2,693,222	+		DZA65_RS12570	0.20	-0.1
2,693,222	+		DZA65_RS12570	0.20	+1.0
2,693,222	+		DZA65_RS12570	0.20	+1.0
2,693,222	+		DZA65_RS12570	0.20	-0.2
2,693,222	+		DZA65_RS12570	0.20	+0.7
2,693,222	+		DZA65_RS12570	0.20	-0.4
2,693,223	-		DZA65_RS12570	0.21	-0.2
2,693,223	-		DZA65_RS12570	0.21	-1.0
2,693,223	-		DZA65_RS12570	0.21	+0.8
2,693,223	-		DZA65_RS12570	0.21	+0.6
2,693,223	-		DZA65_RS12570	0.21	+1.8
2,693,223	-				+0.2
2,693,223	-		DZA65_RS12570	0.21	+1.2
2,693,223	-		DZA65_RS12570	0.21	+1.7
2,693,226	+		DZA65_RS12570	0.21	-0.6
2,693,226	+		DZA65_RS12570	0.21	+0.4
2,693,226	+		DZA65_RS12570	0.21	-0.2
2,693,226	+		DZA65_RS12570	0.21	+0.4
2,693,227	-		DZA65_RS12570	0.21	+0.2
2,693,263	-		DZA65_RS12570	0.22	+1.0
2,693,263	-		DZA65_RS12570	0.22	+1.8
2,693,263	-		DZA65_RS12570	0.22	+0.8
2,693,280	+		DZA65_RS12570	0.23	-1.1
2,693,280	+		DZA65_RS12570	0.23	-0.4
2,693,280	+		DZA65_RS12570	0.23	+0.2
2,693,280	+		DZA65_RS12570	0.23	-1.6
2,693,281	-		DZA65_RS12570	0.23	+0.6
2,693,314	-		DZA65_RS12570	0.25	+0.7
2,693,342	+		DZA65_RS12570	0.26	-0.7
2,693,342	+		DZA65_RS12570	0.26	-1.4
2,693,342	+		DZA65_RS12570	0.26	+0.1
2,693,342	+		DZA65_RS12570	0.26	-0.9
2,693,342	+		DZA65_RS12570	0.26	-0.5
2,693,342	+		DZA65_RS12570	0.26	+0.8
2,693,342	+		DZA65_RS12570	0.26	+0.2
2,693,342	+		DZA65_RS12570	0.26	-0.8
2,693,342	+		DZA65_RS12570	0.26	+0.7
2,693,342	+		DZA65_RS12570	0.26	-0.8
2,693,342	+		DZA65_RS12570	0.26	+0.0
2,693,343	-		DZA65_RS12570	0.26	+0.8
2,693,343	-		DZA65_RS12570	0.26	-0.4
2,693,343	-		DZA65_RS12570	0.26	-0.1
2,693,343	-		DZA65_RS12570	0.26	-2.9
2,693,343	-		DZA65_RS12570	0.26	-1.8
2,693,343	-		DZA65_RS12570	0.26	-0.2
2,693,343	-		DZA65_RS12570	0.26	+1.2
2,693,343	-		DZA65_RS12570	0.26	-0.1
2,693,343	-		DZA65_RS12570	0.26	-0.5
2,693,343	-		DZA65_RS12570	0.26	-0.6
2,693,343	-		DZA65_RS12570	0.26	-0.6
2,693,447	-		DZA65_RS12570	0.31	-0.8
2,693,538	+		DZA65_RS12570	0.35	+0.1
2,693,538	+		DZA65_RS12570	0.35	+1.1
2,693,539	-		DZA65_RS12570	0.35	-0.1
2,693,584	+		DZA65_RS12570	0.37	+1.3
2,693,584	+		DZA65_RS12570	0.37	+0.1
2,693,686	+		DZA65_RS12570	0.42	-0.6
2,693,686	+		DZA65_RS12570	0.42	-1.2
2,693,690	-		DZA65_RS12570	0.42	-1.4
2,693,690	-		DZA65_RS12570	0.42	+0.8
2,693,740	+		DZA65_RS12570	0.44	-2.1
2,693,750	+		DZA65_RS12570	0.45	+0.8
2,693,776	+		DZA65_RS12570	0.46	-0.9
2,693,807	+		DZA65_RS12570	0.47	-0.0
2,693,841	+		DZA65_RS12570	0.49	-0.1
2,693,841	+				-0.4
2,693,841	+		DZA65_RS12570	0.49	+0.9
2,693,841	+		DZA65_RS12570	0.49	-0.9
2,693,842	-		DZA65_RS12570	0.49	+0.9
2,693,842	-		DZA65_RS12570	0.49	-0.3
2,693,897	+		DZA65_RS12570	0.51	+0.1
2,693,898	-		DZA65_RS12570	0.51	-0.4
2,693,898	-		DZA65_RS12570	0.51	-0.8
2,693,945	-		DZA65_RS12570	0.54	-0.3
2,693,945	-		DZA65_RS12570	0.54	+0.7
2,693,957	+		DZA65_RS12570	0.54	+0.4
2,693,958	-		DZA65_RS12570	0.54	-2.4
2,693,958	-		DZA65_RS12570	0.54	+0.2
2,693,965	-		DZA65_RS12570	0.55	+0.2
2,694,017	+		DZA65_RS12570	0.57	+0.5
2,694,017	+		DZA65_RS12570	0.57	-0.8
2,694,018	-		DZA65_RS12570	0.57	-0.6
2,694,164	+		DZA65_RS12570	0.64	-0.0
2,694,164	+		DZA65_RS12570	0.64	+0.8
2,694,164	+		DZA65_RS12570	0.64	+0.4
2,694,165	-		DZA65_RS12570	0.64	-0.5
2,694,165	-		DZA65_RS12570	0.64	-0.5
2,694,165	-		DZA65_RS12570	0.64	+0.2
2,694,165	-		DZA65_RS12570	0.64	-0.0
2,694,179	-		DZA65_RS12570	0.64	+1.1
2,694,422	+		DZA65_RS12570	0.76	+0.1
2,694,422	+		DZA65_RS12570	0.76	-0.0
2,694,422	+		DZA65_RS12570	0.76	-0.0
2,694,422	+		DZA65_RS12570	0.76	+0.0
2,694,422	+		DZA65_RS12570	0.76	-0.4
2,694,423	-		DZA65_RS12570	0.76	+0.8
2,694,423	-		DZA65_RS12570	0.76	+0.8
2,694,423	-		DZA65_RS12570	0.76	-1.0
2,694,424	+		DZA65_RS12570	0.76	+0.0
2,694,509	+		DZA65_RS12570	0.80	+0.6
2,694,510	-		DZA65_RS12570	0.80	-0.5
2,694,520	+		DZA65_RS12570	0.80	-0.8
2,694,520	+		DZA65_RS12570	0.80	-0.0
2,694,520	+		DZA65_RS12570	0.80	+1.0
2,694,521	-		DZA65_RS12570	0.80	-0.4
2,694,521	-		DZA65_RS12570	0.80	-0.9
2,694,674	-		DZA65_RS12570	0.87	+0.6
2,694,674	-		DZA65_RS12570	0.87	-0.1
2,694,756	-				+1.2
2,694,808	+				+1.0
2,694,808	+				-0.0
2,694,809	-				-1.2
2,694,809	-				+1.5
2,694,809	-				-0.8
2,694,814	+				-0.3
2,694,815	-				+0.2
2,694,902	-				-0.8
2,694,947	+				-0.8
2,694,948	-				-0.5
2,694,948	-				+0.8
2,694,948	-				+0.2
2,694,948	-				-0.0
2,694,951	+				+0.4
2,694,951	+				-0.4
2,694,951	+				+0.6
2,694,952	-				+1.0
2,694,952	-				+0.4
2,694,952	-				-1.5
2,694,969	-				-1.0
2,694,969	-				-0.8
2,695,076	-		DZA65_RS12575	0.26	-0.5
2,695,140	+		DZA65_RS12575	0.55	+0.3
2,695,140	+		DZA65_RS12575	0.55	+0.2
2,695,141	-		DZA65_RS12575	0.55	-2.6
2,695,169	+		DZA65_RS12575	0.68	-1.4
2,695,169	+		DZA65_RS12575	0.68	-2.4
2,695,192	+		DZA65_RS12575	0.78	-0.2
2,695,193	-		DZA65_RS12575	0.78	-0.6
2,695,210	+		DZA65_RS12575	0.86	-0.8
2,695,210	+		DZA65_RS12575	0.86	+0.6
2,695,211	-		DZA65_RS12575	0.86	+0.5
2,695,211	-		DZA65_RS12575	0.86	+2.4
2,695,328	+				-1.8
2,695,344	+				-1.2
2,695,345	-				-0.2
2,695,345	-				-3.9
2,695,382	-				-0.4
2,695,410	+				+0.7
2,695,412	+				-0.8
2,695,413	-				+0.3
2,695,413	-				-1.2
2,695,445	+				+0.4
2,695,463	+				+0.2
2,695,477	+				-0.1
2,695,478	-				-0.0
2,695,478	-				+1.8
2,695,552	+				-0.6
2,695,552	+				-0.2
2,695,553	-				-0.6
2,695,555	+				-0.4
2,695,586	+				-0.4
2,695,587	-				-0.1
2,695,587	-				+2.0
2,695,587	-				-1.4
2,695,587	-				+0.6
2,695,587	-				+0.9
2,695,628	+				-0.2
2,695,646	+				+0.5
2,695,689	-				+0.2
2,695,719	-				+0.6
2,695,734	+				+2.0
2,695,734	+				+0.4
2,695,735	-				-3.5
2,695,735	-				+0.6
2,695,735	-				+0.4
2,695,751	-				+1.1
2,695,751	-				+0.6
2,695,766	+				-0.8
2,695,766	+				-1.7
2,695,766	+				-0.4
2,695,767	-				+1.8
2,695,780	+				-1.1
2,695,805	-				-0.8
2,695,838	-				-0.5
2,695,838	-				+0.1
2,695,838	-				+0.9
2,695,843	+				-1.5
2,695,843	+				+1.4
2,695,843	+				-1.2
2,695,844	-				+0.2
2,695,844	-				+1.5
2,695,844	-				+0.5
2,695,900	+		DZA65_RS12580	0.25	-1.4
2,695,903	+		DZA65_RS12580	0.26	+2.0
2,695,904	-		DZA65_RS12580	0.27	-0.8
2,695,904	-		DZA65_RS12580	0.27	+0.1
2,695,935	+		DZA65_RS12580	0.42	+0.6
2,695,936	-		DZA65_RS12580	0.43	+0.5