Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12315

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,629,720	+		DZA65_RS12305	0.78	+0.0
2,629,720	+		DZA65_RS12305	0.78	-0.9
2,629,720	+		DZA65_RS12305	0.78	-0.7
2,629,721	-		DZA65_RS12305	0.78	+0.5
2,629,721	-		DZA65_RS12305	0.78	-1.1
2,629,721	-		DZA65_RS12305	0.78	+1.3
2,629,721	-		DZA65_RS12305	0.78	+0.8
2,629,721	-		DZA65_RS12305	0.78	-0.5
2,629,721	-		DZA65_RS12305	0.78	+0.2
2,629,746	+		DZA65_RS12305	0.82	-0.0
2,629,746	+		DZA65_RS12305	0.82	+0.2
2,629,789	+		DZA65_RS12305	0.88	+0.5
2,629,789	+		DZA65_RS12305	0.88	-0.1
2,629,790	-		DZA65_RS12305	0.88	+0.6
2,629,790	-		DZA65_RS12305	0.88	-0.3
2,629,790	-		DZA65_RS12305	0.88	-0.2
2,629,790	-		DZA65_RS12305	0.88	-0.1
2,629,790	-		DZA65_RS12305	0.88	-1.5
2,629,790	-		DZA65_RS12305	0.88	+0.8
2,629,816	+				-0.4
2,629,816	+				-0.3
2,629,816	+				-0.2
2,629,817	-				-0.5
2,629,817	-				-2.4
2,629,895	-				-1.4
2,629,909	+				-0.4
2,629,909	+				+0.5
2,629,909	+				-2.4
2,629,909	+				+1.2
2,629,909	+				+0.2
2,629,909	+				-0.6
2,629,909	+				-2.0
2,629,909	+				+0.2
2,629,909	+				+0.2
2,629,909	+				+0.9
2,629,909	+				+1.0
2,629,909	+				-1.6
2,629,909	+				+0.2
2,629,909	+				-0.8
2,629,909	+				-1.1
2,629,909	+				+0.2
2,629,909	+				+0.2
2,629,909	+				-1.4
2,629,909	+				-0.1
2,629,910	-				-2.0
2,629,910	-				-0.0
2,629,910	-				+0.2
2,629,910	-				-1.0
2,629,910	-				+1.5
2,629,910	-				+0.9
2,629,910	-				-0.7
2,629,910	-				-1.2
2,629,910	-				+1.5
2,629,913	+				+0.3
2,629,913	+				-0.4
2,629,913	+				-1.1
2,629,914	-				+1.4
2,629,914	-				-1.1
2,629,914	-				+0.5
2,629,914	-				+1.0
2,629,914	-				+0.0
2,629,914	-				-0.5
2,629,914	-				+1.0
2,629,932	-				-2.1
2,629,939	+				+0.8
2,629,940	-				-0.8
2,629,984	+				-0.3
2,629,985	-				-3.4
2,629,985	-				+0.2
2,629,985	-				-1.8
2,629,985	-				-0.4
2,630,005	+		DZA65_RS12310	0.12	-0.5
2,630,005	+		DZA65_RS12310	0.12	+0.2
2,630,005	+		DZA65_RS12310	0.12	-0.5
2,630,005	+		DZA65_RS12310	0.12	+1.3
2,630,005	+		DZA65_RS12310	0.12	-0.8
2,630,005	+		DZA65_RS12310	0.12	-2.4
2,630,006	-		DZA65_RS12310	0.12	-0.9
2,630,006	-		DZA65_RS12310	0.12	+0.1
2,630,030	+		DZA65_RS12310	0.15	+2.4
2,630,062	+		DZA65_RS12310	0.19	+0.1
2,630,062	+		DZA65_RS12310	0.19	+0.1
2,630,062	+		DZA65_RS12310	0.19	+0.7
2,630,351	+		DZA65_RS12310	0.56	-0.0
2,630,352	-		DZA65_RS12310	0.56	-1.0
2,630,579	+		DZA65_RS12310	0.85	-0.6
2,630,580	-		DZA65_RS12310	0.85	-3.2
2,630,695	-				-1.2
2,630,695	-				-0.8
2,630,782	-				-1.4
2,630,782	-				+0.2
2,630,782	-				-0.0
2,630,841	+		DZA65_RS12315	0.14	-0.4
2,631,090	-		DZA65_RS12315	0.41	+0.2
2,631,126	+		DZA65_RS12315	0.45	-2.1
2,631,126	+		DZA65_RS12315	0.45	+0.6
2,631,127	-		DZA65_RS12315	0.45	-0.1
2,631,127	-		DZA65_RS12315	0.45	+1.0
2,631,127	-		DZA65_RS12315	0.45	-0.9
2,631,259	+		DZA65_RS12315	0.59	-0.5
2,631,259	+		DZA65_RS12315	0.59	+0.1
2,631,260	-		DZA65_RS12315	0.59	+1.0
2,631,260	-		DZA65_RS12315	0.59	+1.2
2,631,260	-		DZA65_RS12315	0.59	+0.5
2,631,384	+		DZA65_RS12315	0.72	-0.9
2,631,524	+		DZA65_RS12315	0.87	+0.8
2,631,536	+		DZA65_RS12315	0.89	+0.4
2,631,536	+		DZA65_RS12315	0.89	+1.6
2,631,536	+		DZA65_RS12315	0.89	+1.4
2,631,536	+		DZA65_RS12315	0.89	+0.6
2,631,536	+		DZA65_RS12315	0.89	-0.3
2,631,536	+		DZA65_RS12315	0.89	-0.1
2,631,537	-		DZA65_RS12315	0.89	-0.5
2,631,537	-		DZA65_RS12315	0.89	-0.8
2,631,619	-				-0.1
2,631,639	+				-0.4
2,631,639	+				+0.7
2,631,707	+				-1.4
2,631,708	-				+1.2
2,631,715	+				-0.0
2,631,716	-				+2.2
2,631,716	-				+0.5
2,632,047	+				-1.4
2,632,048	-				+0.2
2,632,059	-				-0.1
2,632,080	+				+0.9
2,632,080	+				-1.9
2,632,230	+		DZA65_RS12325	0.18	+0.9
2,632,230	+		DZA65_RS12325	0.18	+1.1
2,632,230	+		DZA65_RS12325	0.18	+1.2
2,632,231	-		DZA65_RS12325	0.18	-1.7
2,632,231	-		DZA65_RS12325	0.18	-2.6
2,632,231	-		DZA65_RS12325	0.18	+0.7
2,632,231	-				-1.1
2,632,236	+		DZA65_RS12325	0.18	+0.6
2,632,237	-		DZA65_RS12325	0.19	-1.4
2,632,237	-		DZA65_RS12325	0.19	+0.8
2,632,263	+		DZA65_RS12325	0.21	-0.0
2,632,263	+		DZA65_RS12325	0.21	+1.7
2,632,263	+		DZA65_RS12325	0.21	-0.2
2,632,264	-		DZA65_RS12325	0.22	-0.1
2,632,264	-		DZA65_RS12325	0.22	+0.2
2,632,340	-		DZA65_RS12325	0.30	+0.4
2,632,340	-		DZA65_RS12325	0.30	-0.9
2,632,430	+		DZA65_RS12325	0.40	+0.9
2,632,489	+		DZA65_RS12325	0.46	+0.4
2,632,489	+		DZA65_RS12325	0.46	-0.2
2,632,500	+		DZA65_RS12325	0.47	-0.4
2,632,500	+		DZA65_RS12325	0.47	-1.4
2,632,501	-		DZA65_RS12325	0.47	+0.5
2,632,501	-		DZA65_RS12325	0.47	+0.4
2,632,501	-		DZA65_RS12325	0.47	-0.3
2,632,501	-		DZA65_RS12325	0.47	+0.0
2,632,501	-		DZA65_RS12325	0.47	+0.0
2,632,519	+		DZA65_RS12325	0.49	+0.9
2,632,519	+		DZA65_RS12325	0.49	-0.1
2,632,519	+		DZA65_RS12325	0.49	-0.5
2,632,520	-		DZA65_RS12325	0.50	+1.0
2,632,570	+		DZA65_RS12325	0.55	+0.0
2,632,570	+		DZA65_RS12325	0.55	+0.2
2,632,570	+		DZA65_RS12325	0.55	+1.0
2,632,570	+		DZA65_RS12325	0.55	+0.9
2,632,571	-		DZA65_RS12325	0.55	+0.0
2,632,571	-		DZA65_RS12325	0.55	+0.2
2,632,571	-		DZA65_RS12325	0.55	+0.1
2,632,572	+		DZA65_RS12325	0.55	-3.2
2,632,572	+		DZA65_RS12325	0.55	+0.2
2,632,572	+		DZA65_RS12325	0.55	+0.4
2,632,572	+		DZA65_RS12325	0.55	-1.6
2,632,572	+		DZA65_RS12325	0.55	+0.4
2,632,572	+		DZA65_RS12325	0.55	-1.5
2,632,572	+		DZA65_RS12325	0.55	+0.0
2,632,572	+		DZA65_RS12325	0.55	-1.5
2,632,572	+		DZA65_RS12325	0.55	-0.8
2,632,572	+		DZA65_RS12325	0.55	+1.1
2,632,572	+		DZA65_RS12325	0.55	-1.6
2,632,572	+		DZA65_RS12325	0.55	-0.5
2,632,572	+				-1.4
2,632,572	+		DZA65_RS12325	0.55	+0.5
2,632,572	+		DZA65_RS12325	0.55	+0.2
2,632,573	-		DZA65_RS12325	0.55	-0.6
2,632,573	-		DZA65_RS12325	0.55	-1.1
2,632,573	-		DZA65_RS12325	0.55	-2.8
2,632,573	-		DZA65_RS12325	0.55	-1.1
2,632,573	-		DZA65_RS12325	0.55	-0.1
2,632,573	-		DZA65_RS12325	0.55	+1.2
2,632,573	-		DZA65_RS12325	0.55	+0.6
2,632,573	-		DZA65_RS12325	0.55	+0.8
2,632,573	-		DZA65_RS12325	0.55	-0.2
2,632,573	-		DZA65_RS12325	0.55	-0.5
2,632,617	+		DZA65_RS12325	0.60	+0.8