Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12165

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,600,547	+				+0.8
2,600,547	+				-0.2
2,600,547	+				-0.7
2,600,548	-				+0.2
2,600,548	-				+1.2
2,600,548	-				-0.5
2,600,548	-				-2.8
2,600,548	-				+0.2
2,600,621	+				-0.1
2,600,621	+				-0.2
2,600,622	-				-1.8
2,600,622	-				-2.1
2,600,633	+				+0.2
2,600,633	+				-1.4
2,600,640	+				-2.2
2,600,659	-				-1.8
2,600,659	-				-2.5
2,600,659	-				-0.2
2,600,671	+				-1.4
2,600,672	-				+0.1
2,600,672	-				-0.7
2,600,688	+				+0.0
2,600,688	+				+0.1
2,600,689	-				+1.5
2,600,689	-				+1.2
2,600,689	-				+0.5
2,600,689	-				+0.2
2,600,693	+				+1.0
2,600,694	-				-1.1
2,600,694	-				-0.1
2,600,697	-				+0.1
2,600,737	+				-1.8
2,600,737	+				-1.0
2,600,737	+				-0.4
2,600,737	+				-2.4
2,600,737	+				+0.0
2,600,737	+				-2.0
2,600,737	+				-0.4
2,600,737	+				+1.5
2,600,737	+				-0.4
2,600,737	+				-0.5
2,600,737	+				-0.1
2,600,737	+				+0.2
2,600,738	-				-1.0
2,600,738	-				+0.9
2,600,738	-				+0.2
2,600,738	-				-0.5
2,600,738	-				-0.0
2,600,738	-				-0.3
2,600,738	-				+1.1
2,600,763	+				-2.4
2,600,767	-				-1.8
2,600,767	-				-0.1
2,600,767	-				+1.0
2,600,767	-				+0.5
2,600,769	+				-1.8
2,600,769	+				-0.2
2,600,769	+				-1.0
2,600,769	+				-0.8
2,600,769	+				+0.2
2,600,769	+				+1.2
2,600,769	+				+0.6
2,600,769	+				+0.2
2,600,769	+				-0.5
2,600,769	+				+2.5
2,600,769	+				-0.6
2,600,769	+				-0.3
2,600,769	+				-2.0
2,600,769	+				+0.0
2,600,769	+				-0.5
2,600,769	+				-0.4
2,600,769	+				-0.2
2,600,769	+				-1.0
2,600,770	-				-1.2
2,600,770	-				+0.0
2,600,770	-				+0.2
2,600,770	-				-0.5
2,600,770	-				-0.1
2,600,770	-				-0.8
2,600,770	-				+0.7
2,600,770	-				+0.5
2,600,770	-				-1.8
2,600,770	-				-0.8
2,600,770	-				-0.1
2,600,770	-				+0.7
2,600,770	-				-0.0
2,600,770	-				-1.4
2,600,770	-				-0.3
2,600,770	-				+1.0
2,600,791	+				-0.2
2,600,791	+				+0.6
2,600,791	+				+0.2
2,600,791	+				+1.2
2,600,791	+				+1.3
2,600,792	-				+1.5
2,600,792	-				-1.0
2,600,792	-				-0.8
2,601,020	+		DZA65_RS12160	0.33	-0.5
2,601,021	-		DZA65_RS12160	0.33	-0.0
2,601,021	-		DZA65_RS12160	0.33	+0.4
2,601,021	-		DZA65_RS12160	0.33	-2.8
2,601,426	+				+0.2
2,601,426	+				+0.1
2,601,426	+				-1.1
2,601,426	+				-1.4
2,601,426	+				+0.6
2,601,426	+				-2.6
2,601,426	+				-2.1
2,601,426	+				+0.2
2,601,426	+				-0.6
2,601,427	-				+1.4
2,601,427	-				+0.9
2,601,427	-				-0.5
2,601,427	-				+1.2
2,601,427	-				+0.4
2,601,427	-				-0.2
2,601,427	-				+1.1
2,601,427	-				+0.2
2,601,427	-				-0.2
2,601,427	-				+0.0
2,601,427	-				-0.4
2,601,427	-				-0.2
2,601,427	-				-1.4
2,601,427	-				+0.2
2,601,457	+				-0.8
2,601,457	+				-0.1
2,601,457	+				+1.1
2,601,457	+				-0.2
2,601,457	+				+0.2
2,601,458	-				+1.2
2,601,458	-				+1.6
2,601,466	+				-1.8
2,601,471	+				-0.5
2,601,471	+				+0.1
2,601,472	-				+0.1
2,601,507	-				-0.0
2,601,514	+				-0.5
2,601,519	+				+1.1
2,601,519	+				-1.4
2,601,520	-				+0.5
2,601,520	-				-0.4
2,601,526	+				+0.9
2,601,539	-				-2.2
2,601,675	-		DZA65_RS12165	0.24	+1.1
2,601,675	-		DZA65_RS12165	0.24	-1.0
2,601,679	+		DZA65_RS12165	0.24	+1.1
2,601,679	+		DZA65_RS12165	0.24	+1.2
2,601,679	+		DZA65_RS12165	0.24	-0.1
2,601,679	+		DZA65_RS12165	0.24	+0.4
2,601,680	-		DZA65_RS12165	0.24	+0.8
2,601,680	-		DZA65_RS12165	0.24	-0.2
2,601,680	-		DZA65_RS12165	0.24	+0.0
2,601,680	-		DZA65_RS12165	0.24	-1.0
2,601,680	-		DZA65_RS12165	0.24	+0.2
2,601,680	-		DZA65_RS12165	0.24	-1.4
2,601,680	-		DZA65_RS12165	0.24	+1.3
2,601,863	-		DZA65_RS12165	0.55	+0.2
2,602,073	+				-1.1
2,602,074	-				+0.2
2,602,128	+				+1.2
2,602,128	+				-0.2
2,602,128	+				-1.6
2,602,128	+				-1.0
2,602,128	+				-0.6
2,602,128	+				-0.8
2,602,128	+				-0.3
2,602,128	+				-1.0
2,602,129	-				-0.2
2,602,129	-				-1.4
2,602,129	-				+0.2
2,602,129	-				-1.1
2,602,129	-				+0.2
2,602,129	-				-1.4
2,602,310	+		DZA65_RS12170	0.23	-1.5
2,602,310	+		DZA65_RS12170	0.23	-0.5
2,602,310	+		DZA65_RS12170	0.23	+0.8
2,602,310	+		DZA65_RS12170	0.23	-1.5
2,602,311	-		DZA65_RS12170	0.23	-2.4
2,602,311	-		DZA65_RS12170	0.23	-0.9
2,602,321	+		DZA65_RS12170	0.24	-0.5
2,602,322	-		DZA65_RS12170	0.24	-0.6
2,602,358	+		DZA65_RS12170	0.29	+0.7
2,602,448	-		DZA65_RS12170	0.40	+1.2
2,602,459	-		DZA65_RS12170	0.42	+0.5
2,602,481	+		DZA65_RS12170	0.45	-0.7
2,602,481	+		DZA65_RS12170	0.45	-0.0
2,602,481	+		DZA65_RS12170	0.45	-0.5
2,602,482	-		DZA65_RS12170	0.45	+0.2
2,602,482	-		DZA65_RS12170	0.45	+0.4
2,602,482	-		DZA65_RS12170	0.45	+0.9
2,602,499	+		DZA65_RS12170	0.47	-0.5
2,602,499	+		DZA65_RS12170	0.47	+0.6
2,602,499	+		DZA65_RS12170	0.47	+1.4
2,602,499	+		DZA65_RS12170	0.47	+0.9
2,602,500	-		DZA65_RS12170	0.47	-0.2
2,602,500	-		DZA65_RS12170	0.47	-0.6
2,602,500	-		DZA65_RS12170	0.47	-1.4
2,602,500	-		DZA65_RS12170	0.47	-0.3
2,602,585	+		DZA65_RS12170	0.58	-0.5
2,602,585	+		DZA65_RS12170	0.58	+0.4
2,602,585	+		DZA65_RS12170	0.58	-1.5
2,602,585	+		DZA65_RS12170	0.58	+0.2
2,602,586	-		DZA65_RS12170	0.58	+0.4
2,602,586	-		DZA65_RS12170	0.58	+1.3
2,602,586	-		DZA65_RS12170	0.58	-0.1
2,602,586	-		DZA65_RS12170	0.58	+1.2
2,602,586	-		DZA65_RS12170	0.58	-0.2
2,602,586	-		DZA65_RS12170	0.58	-0.4
2,602,586	-		DZA65_RS12170	0.58	+1.1
2,602,586	-				-0.4
2,602,586	-		DZA65_RS12170	0.58	+1.4
2,602,694	+		DZA65_RS12170	0.72	+0.2
2,602,694	+		DZA65_RS12170	0.72	+0.5
2,602,736	+		DZA65_RS12170	0.77	-0.0
2,602,907	+				+1.8
2,602,907	+				-1.4
2,602,907	+				+0.2
2,602,908	-				-0.9
2,602,908	-				-0.2
2,602,908	-				+0.1
2,602,951	-				+0.5
2,602,975	+				+0.7
2,602,976	-				-0.8
2,602,976	-				+1.3
2,602,976	-				+0.8
2,602,976	-				-0.5
2,602,976	-				+1.6
2,602,999	+				+0.5
2,602,999	+				+0.8
2,603,000	-				+0.1
2,603,000	-				-1.4
2,603,000	-				-0.2
2,603,000	-				-1.8
2,603,007	+				-0.2
2,603,008	-				-0.1
2,603,015	-				-1.6
2,603,031	+				+0.3
2,603,031	+				-0.7
2,603,032	-				-0.1
2,603,065	+				+1.8
2,603,065	+				+2.2