Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12100

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,583,988	+				+0.1
2,583,988	+				-0.9
2,583,988	+				-0.5
2,583,989	-				-1.1
2,583,989	-				-0.9
2,583,989	-				+1.5
2,583,989	-				+0.1
2,584,160	-				+0.3
2,584,540	+				+1.9
2,584,755	+				-0.5
2,584,788	-				-0.8
2,584,798	+				+0.8
2,584,810	+				-0.6
2,584,824	+				-0.7
2,584,824	+				-0.7
2,584,825	-				-1.4
2,584,833	+				-0.2
2,584,834	-				-0.8
2,584,880	+				+0.5
2,584,970	+				-0.8
2,584,999	+				+1.1
2,585,000	-		DZA65_RS12100	0.10	+0.9
2,585,000	-		DZA65_RS12100	0.10	+0.3
2,585,007	+		DZA65_RS12100	0.10	-0.1
2,585,007	+		DZA65_RS12100	0.10	-0.4
2,585,007	+		DZA65_RS12100	0.10	+0.1
2,585,007	+		DZA65_RS12100	0.10	-2.4
2,585,007	+		DZA65_RS12100	0.10	-0.1
2,585,007	+		DZA65_RS12100	0.10	-0.6
2,585,007	+		DZA65_RS12100	0.10	+0.2
2,585,008	-		DZA65_RS12100	0.10	+0.1
2,585,008	-		DZA65_RS12100	0.10	+0.4
2,585,008	-		DZA65_RS12100	0.10	-1.3
2,585,089	+		DZA65_RS12100	0.15	+0.8
2,585,121	+		DZA65_RS12100	0.17	+0.2
2,585,121	+		DZA65_RS12100	0.17	+0.2
2,585,121	+		DZA65_RS12100	0.17	-0.1
2,585,121	+		DZA65_RS12100	0.17	-0.8
2,585,121	+		DZA65_RS12100	0.17	-0.1
2,585,121	+		DZA65_RS12100	0.17	+0.3
2,585,122	-		DZA65_RS12100	0.17	-2.0
2,585,122	-				+1.2
2,585,122	-		DZA65_RS12100	0.17	-0.5
2,585,199	+		DZA65_RS12100	0.22	+1.2
2,585,223	+		DZA65_RS12100	0.23	+0.3
2,585,223	+		DZA65_RS12100	0.23	+1.5
2,585,224	-		DZA65_RS12100	0.23	+0.3
2,585,224	-		DZA65_RS12100	0.23	+0.2
2,585,224	-		DZA65_RS12100	0.23	+1.3
2,585,224	-		DZA65_RS12100	0.23	+1.1
2,585,250	+		DZA65_RS12100	0.25	+2.0
2,585,250	+		DZA65_RS12100	0.25	-1.8
2,585,250	+		DZA65_RS12100	0.25	+0.0
2,585,250	+		DZA65_RS12100	0.25	+0.5
2,585,250	+		DZA65_RS12100	0.25	+1.7
2,585,250	+		DZA65_RS12100	0.25	-1.8
2,585,251	-		DZA65_RS12100	0.25	-0.2
2,585,251	-		DZA65_RS12100	0.25	+0.0
2,585,251	-		DZA65_RS12100	0.25	-0.4
2,585,251	-		DZA65_RS12100	0.25	+0.4
2,585,251	-		DZA65_RS12100	0.25	+0.6
2,585,253	+		DZA65_RS12100	0.25	+0.2
2,585,253	+		DZA65_RS12100	0.25	-1.1
2,585,253	+		DZA65_RS12100	0.25	+1.7
2,585,253	+		DZA65_RS12100	0.25	-0.6
2,585,253	+		DZA65_RS12100	0.25	+1.4
2,585,253	+		DZA65_RS12100	0.25	+1.2
2,585,253	+		DZA65_RS12100	0.25	+0.6
2,585,253	+		DZA65_RS12100	0.25	+0.2
2,585,253	+		DZA65_RS12100	0.25	-1.8
2,585,254	-		DZA65_RS12100	0.25	-0.3
2,585,254	-		DZA65_RS12100	0.25	-0.3
2,585,254	-		DZA65_RS12100	0.25	-0.1
2,585,254	-		DZA65_RS12100	0.25	+0.3
2,585,254	-		DZA65_RS12100	0.25	-1.5
2,585,254	-		DZA65_RS12100	0.25	+0.1
2,585,254	-		DZA65_RS12100	0.25	-0.4
2,585,254	-		DZA65_RS12100	0.25	+1.2
2,585,254	-		DZA65_RS12100	0.25	+0.8
2,585,254	-		DZA65_RS12100	0.25	+2.5
2,585,254	-		DZA65_RS12100	0.25	-1.7
2,585,254	-		DZA65_RS12100	0.25	-2.1
2,585,254	-		DZA65_RS12100	0.25	+0.8
2,585,309	-		DZA65_RS12100	0.28	+0.4
2,585,352	+		DZA65_RS12100	0.31	+0.6
2,585,352	+		DZA65_RS12100	0.31	+1.8
2,585,463	+		DZA65_RS12100	0.38	+1.2
2,585,463	+		DZA65_RS12100	0.38	+0.2
2,585,464	-		DZA65_RS12100	0.38	-1.1
2,585,464	-		DZA65_RS12100	0.38	-0.2
2,585,464	-		DZA65_RS12100	0.38	-0.2
2,585,467	+		DZA65_RS12100	0.38	-0.1
2,585,467	+		DZA65_RS12100	0.38	+0.3
2,585,467	+		DZA65_RS12100	0.38	-0.4
2,585,468	-		DZA65_RS12100	0.38	-2.2
2,585,468	-		DZA65_RS12100	0.38	+0.8
2,585,468	-		DZA65_RS12100	0.38	-0.1
2,585,468	-		DZA65_RS12100	0.38	+0.2
2,585,468	-		DZA65_RS12100	0.38	-0.4
2,585,468	-		DZA65_RS12100	0.38	+2.5
2,585,605	+		DZA65_RS12100	0.46	-1.4
2,585,605	+		DZA65_RS12100	0.46	-1.2
2,585,605	+		DZA65_RS12100	0.46	+0.5
2,585,605	+		DZA65_RS12100	0.46	+0.0
2,585,628	+		DZA65_RS12100	0.47	+0.7
2,585,629	-		DZA65_RS12100	0.48	+0.2
2,585,629	-		DZA65_RS12100	0.48	-1.4
2,585,629	-		DZA65_RS12100	0.48	+0.6
2,585,629	-				+0.2
2,585,634	+		DZA65_RS12100	0.48	-0.4
2,585,635	-		DZA65_RS12100	0.48	+0.3
2,585,635	-		DZA65_RS12100	0.48	+0.3
2,585,650	-		DZA65_RS12100	0.49	-0.0
2,585,656	-		DZA65_RS12100	0.49	-0.8
2,585,932	+		DZA65_RS12100	0.66	-0.5
2,585,932	+		DZA65_RS12100	0.66	+0.7
2,585,932	+		DZA65_RS12100	0.66	-1.1
2,585,932	+		DZA65_RS12100	0.66	-1.0
2,585,932	+		DZA65_RS12100	0.66	-0.9
2,585,932	+		DZA65_RS12100	0.66	+0.9
2,585,933	-		DZA65_RS12100	0.66	-2.8
2,585,933	-		DZA65_RS12100	0.66	+0.9
2,586,032	-		DZA65_RS12100	0.72	-0.8
2,586,032	-		DZA65_RS12100	0.72	-0.4
2,586,144	+		DZA65_RS12100	0.78	-0.2
2,586,144	+		DZA65_RS12100	0.78	+0.3
2,586,144	+		DZA65_RS12100	0.78	+1.2
2,586,145	-		DZA65_RS12100	0.78	+0.1
2,586,145	-		DZA65_RS12100	0.78	-0.9
2,586,145	-		DZA65_RS12100	0.78	-0.8
2,586,193	+		DZA65_RS12100	0.81	+1.9
2,586,193	+		DZA65_RS12100	0.81	-0.2
2,586,202	+		DZA65_RS12100	0.82	+0.2
2,586,250	+		DZA65_RS12100	0.85	+0.6
2,586,251	-		DZA65_RS12100	0.85	+1.9
2,586,259	+		DZA65_RS12100	0.85	+0.7
2,586,280	+		DZA65_RS12100	0.86	+1.2
2,586,281	-		DZA65_RS12100	0.86	-0.1
2,586,281	-				-0.8
2,586,314	+		DZA65_RS12100	0.88	-0.0
2,586,524	-				-0.6
2,586,540	-				-1.6
2,586,540	-				-0.9
2,586,554	+				-0.5
2,586,554	+				+0.2
2,586,555	-				+0.2
2,586,557	+				+0.2
2,586,557	+				-1.8
2,586,558	-				-1.2
2,586,589	-				-1.2
2,586,692	-				-1.4
2,586,705	+				-0.1
2,586,705	+				+0.6
2,586,706	-				-0.8
2,586,723	-				+1.1
2,586,754	+				+1.2
2,586,754	+				-0.2
2,586,754	+				-2.1
2,586,755	-				+0.6
2,586,825	+				-0.3
2,586,826	-				+0.5
2,586,835	-				-0.2
2,586,837	+				+1.2
2,586,837	+				-0.5
2,586,852	+				-1.0
2,586,852	+				-0.1
2,586,870	+				-0.6
2,586,870	+				+0.2
2,586,870	+				+0.2
2,586,870	+				-1.2
2,586,870	+				+0.5
2,586,871	-				-2.1
2,586,871	-				-1.4
2,586,878	+				-1.0
2,586,947	+		DZA65_RS12105	0.11	-0.5
2,586,967	-		DZA65_RS12105	0.16	-0.1
2,586,978	-		DZA65_RS12105	0.19	-0.1
2,586,990	-		DZA65_RS12105	0.22	-0.0
2,587,002	-		DZA65_RS12105	0.25	-1.0
2,587,019	+		DZA65_RS12105	0.29	-0.0
2,587,019	+		DZA65_RS12105	0.29	-0.6
2,587,019	+		DZA65_RS12105	0.29	-0.9
2,587,020	-		DZA65_RS12105	0.30	-0.3
2,587,060	-		DZA65_RS12105	0.40	-1.0
2,587,086	+		DZA65_RS12105	0.46	-1.4
2,587,086	+		DZA65_RS12105	0.46	-1.3
2,587,087	-		DZA65_RS12105	0.46	-1.1
2,587,087	-		DZA65_RS12105	0.46	-0.5
2,587,167	+		DZA65_RS12105	0.67	-1.8
2,587,167	+		DZA65_RS12105	0.67	+1.4
2,587,168	-		DZA65_RS12105	0.67	-1.0
2,587,168	-		DZA65_RS12105	0.67	+0.1
2,587,169	+		DZA65_RS12105	0.67	-0.0
2,587,296	+				+0.7
2,587,296	+				+0.4
2,587,296	+				+0.5
2,587,296	+				+0.7
2,587,297	-				+0.2
2,587,297	-				+0.0
2,587,297	-				-1.1
2,587,297	-				-0.8
2,587,337	-				-1.1
2,587,397	+				+0.6
2,587,397	+				-0.2
2,587,398	-				-0.5
2,587,398	-				+0.2
2,587,480	+				+0.8