Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11115

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,353,677	+		DZA65_RS11110	0.30	+0.2
2,353,677	+		DZA65_RS11110	0.30	+0.2
2,353,677	+		DZA65_RS11110	0.30	+0.4
2,353,678	-		DZA65_RS11110	0.31	-1.4
2,353,678	-		DZA65_RS11110	0.31	-1.0
2,353,838	-		DZA65_RS11110	0.46	+2.0
2,353,910	+		DZA65_RS11110	0.53	+0.3
2,353,964	-		DZA65_RS11110	0.59	+0.1
2,353,993	+		DZA65_RS11110	0.62	-1.0
2,353,994	-				+0.5
2,354,076	+		DZA65_RS11110	0.70	-1.1
2,354,076	+		DZA65_RS11110	0.70	+1.6
2,354,076	+		DZA65_RS11110	0.70	-1.4
2,354,076	+		DZA65_RS11110	0.70	-0.4
2,354,076	+		DZA65_RS11110	0.70	+0.2
2,354,076	+		DZA65_RS11110	0.70	-0.7
2,354,076	+		DZA65_RS11110	0.70	-0.8
2,354,076	+		DZA65_RS11110	0.70	+0.6
2,354,076	+		DZA65_RS11110	0.70	+0.5
2,354,076	+		DZA65_RS11110	0.70	-0.4
2,354,076	+		DZA65_RS11110	0.70	-0.2
2,354,077	-		DZA65_RS11110	0.70	-1.4
2,354,077	-		DZA65_RS11110	0.70	-2.0
2,354,077	-		DZA65_RS11110	0.70	-2.1
2,354,077	-		DZA65_RS11110	0.70	-2.1
2,354,077	-		DZA65_RS11110	0.70	+0.6
2,354,077	-		DZA65_RS11110	0.70	+0.2
2,354,077	-		DZA65_RS11110	0.70	-1.4
2,354,077	-		DZA65_RS11110	0.70	+0.2
2,354,077	-		DZA65_RS11110	0.70	-0.3
2,354,077	-		DZA65_RS11110	0.70	+1.2
2,354,077	-		DZA65_RS11110	0.70	-0.6
2,354,120	+		DZA65_RS11110	0.74	+1.0
2,354,120	+		DZA65_RS11110	0.74	+0.2
2,354,120	+		DZA65_RS11110	0.74	-2.6
2,354,121	-		DZA65_RS11110	0.74	+1.2
2,354,121	-		DZA65_RS11110	0.74	+1.0
2,354,121	-		DZA65_RS11110	0.74	+0.9
2,354,143	-		DZA65_RS11110	0.76	-0.8
2,354,256	-		DZA65_RS11110	0.87	-2.0
2,354,256	-		DZA65_RS11110	0.87	+0.2
2,354,287	+				+0.1
2,354,287	+				+0.2
2,354,290	+				+0.2
2,354,290	+				-0.8
2,354,291	-				+0.2
2,354,291	-				-0.5
2,354,315	-				-0.8
2,354,332	+				+0.2
2,354,332	+				-0.0
2,354,377	+				-0.8
2,354,378	-				+0.2
2,354,497	+				-0.8
2,354,498	-				-0.1
2,354,553	-				-0.1
2,354,555	-				+0.1
2,354,673	-				+1.2
2,354,788	+		DZA65_RS11115	0.10	-0.5
2,354,788	+		DZA65_RS11115	0.10	+0.2
2,354,789	-		DZA65_RS11115	0.10	-0.5
2,354,789	-		DZA65_RS11115	0.10	-2.1
2,354,789	-		DZA65_RS11115	0.10	-0.1
2,354,789	-		DZA65_RS11115	0.10	-1.2
2,354,789	-		DZA65_RS11115	0.10	+0.2
2,354,954	+		DZA65_RS11115	0.21	+0.4
2,354,955	-		DZA65_RS11115	0.21	+0.2
2,354,955	-		DZA65_RS11115	0.21	-0.8
2,354,955	-		DZA65_RS11115	0.21	+0.4
2,355,005	+		DZA65_RS11115	0.24	-0.4
2,355,005	+		DZA65_RS11115	0.24	+2.2
2,355,005	+		DZA65_RS11115	0.24	+1.8
2,355,006	-		DZA65_RS11115	0.24	+0.6
2,355,006	-		DZA65_RS11115	0.24	-1.0
2,355,029	+		DZA65_RS11115	0.25	-3.0
2,355,864	-		DZA65_RS11115	0.79	-0.2
2,355,972	+		DZA65_RS11115	0.86	-1.1
2,355,972	+		DZA65_RS11115	0.86	-1.1
2,355,973	-		DZA65_RS11115	0.86	-0.7
2,356,196	+				+1.0
2,356,196	+				+0.5
2,356,196	+				-2.4
2,356,197	-				-2.4
2,356,197	-				-0.4
2,356,197	-				-0.1
2,356,197	-				+0.0
2,356,197	-				+1.4
2,356,198	+				+0.2
2,356,198	+				-0.3
2,356,198	+				+1.8
2,356,198	+				-0.6
2,356,198	+				-1.4
2,356,198	+				+0.3
2,356,199	-				+0.0
2,356,199	-				+0.2
2,356,199	-				-0.6
2,356,200	+				-0.8
2,356,200	+				+0.2
2,356,200	+				-0.9
2,356,200	+				+0.7
2,356,200	+				+1.5
2,356,200	+				+0.4
2,356,200	+				+0.4
2,356,200	+				+0.4
2,356,200	+				+0.6
2,356,201	-				+1.5
2,356,201	-				-1.0
2,356,201	-				-0.4
2,356,226	+				+1.2
2,356,226	+				+0.2
2,356,226	+				-1.2
2,356,227	-				-0.8
2,356,244	-				-0.5
2,356,244	-				-0.5
2,356,244	-				+0.5
2,356,253	+				+0.1
2,356,253	+				-0.0
2,356,253	+				+0.5
2,356,253	+				+0.5
2,356,253	+				-0.4
2,356,254	-				-0.5
2,356,254	-				+0.5
2,356,255	+				+0.6
2,356,255	+				+0.1
2,356,256	-				-0.7
2,356,256	-				-1.6
2,356,256	-				-0.6
2,356,256	-				+0.7
2,356,256	-				-0.4
2,356,272	+				-2.0
2,356,274	+				+0.6
2,356,274	+				+0.6
2,356,274	+				-0.7
2,356,333	-				-1.0
2,356,351	+				+1.4
2,356,352	-				+1.2
2,356,352	-				-0.6
2,356,453	-		DZA65_RS11120	0.17	+1.9
2,356,457	+		DZA65_RS11120	0.17	+1.8
2,356,457	+		DZA65_RS11120	0.17	+0.7
2,356,458	-		DZA65_RS11120	0.17	+0.8
2,356,458	-		DZA65_RS11120	0.17	+0.6
2,356,458	-		DZA65_RS11120	0.17	-0.1
2,356,595	+		DZA65_RS11120	0.29	+1.0
2,356,595	+		DZA65_RS11120	0.29	+1.6
2,356,595	+		DZA65_RS11120	0.29	-2.1
2,356,595	+		DZA65_RS11120	0.29	+0.7
2,356,595	+		DZA65_RS11120	0.29	+0.4
2,356,595	+		DZA65_RS11120	0.29	+0.2
2,356,596	-		DZA65_RS11120	0.29	-1.0
2,356,596	-		DZA65_RS11120	0.29	+1.2
2,356,596	-		DZA65_RS11120	0.29	+0.1
2,356,596	-		DZA65_RS11120	0.29	+2.5
2,356,596	-		DZA65_RS11120	0.29	+0.4
2,356,596	-		DZA65_RS11120	0.29	+1.2
2,356,596	-		DZA65_RS11120	0.29	+1.0
2,356,596	-		DZA65_RS11120	0.29	+2.7
2,356,688	+		DZA65_RS11120	0.37	+0.7
2,356,779	+		DZA65_RS11120	0.44	+1.6
2,356,779	+		DZA65_RS11120	0.44	+1.2
2,356,780	-		DZA65_RS11120	0.45	+1.1
2,357,012	+		DZA65_RS11120	0.64	+2.9
2,357,012	+		DZA65_RS11120	0.64	+1.3
2,357,013	-		DZA65_RS11120	0.64	+1.0
2,357,013	-		DZA65_RS11120	0.64	-2.0
2,357,013	-		DZA65_RS11120	0.64	-0.0
2,357,060	+		DZA65_RS11120	0.68	+0.1
2,357,060	+		DZA65_RS11120	0.68	+1.5
2,357,060	+		DZA65_RS11120	0.68	+1.5
2,357,061	-		DZA65_RS11120	0.68	-1.4
2,357,061	-		DZA65_RS11120	0.68	-1.6
2,357,134	-		DZA65_RS11120	0.74	-0.0
2,357,143	+		DZA65_RS11120	0.75	+0.5
2,357,143	+		DZA65_RS11120	0.75	+1.3
2,357,143	+		DZA65_RS11120	0.75	+1.2
2,357,144	-		DZA65_RS11120	0.75	+1.5