Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,300,308	+				+0.4
2,300,308	+				+0.8
2,300,309	-				-0.4
2,300,310	+				+0.2
2,300,311	-				+1.0
2,300,314	+				+0.5
2,300,315	-				+1.0
2,300,315	-				-0.2
2,300,315	-				-1.2
2,300,385	-				+0.0
2,300,427	-		DZA65_RS10865	0.11	+0.2
2,300,478	+		DZA65_RS10865	0.17	+0.2
2,300,479	-		DZA65_RS10865	0.17	+0.6
2,300,479	-		DZA65_RS10865	0.17	-1.2
2,300,508	+		DZA65_RS10865	0.20	+0.2
2,300,509	-		DZA65_RS10865	0.20	+0.5
2,300,513	+		DZA65_RS10865	0.21	-2.1
2,300,513	+		DZA65_RS10865	0.21	-2.1
2,300,513	+		DZA65_RS10865	0.21	-0.7
2,300,513	+		DZA65_RS10865	0.21	-1.2
2,300,514	-		DZA65_RS10865	0.21	-0.8
2,300,514	-		DZA65_RS10865	0.21	-0.0
2,300,514	-		DZA65_RS10865	0.21	-0.6
2,300,514	-		DZA65_RS10865	0.21	-0.2
2,300,517	+		DZA65_RS10865	0.21	+1.0
2,300,518	-		DZA65_RS10865	0.21	-0.5
2,300,518	-		DZA65_RS10865	0.21	-0.8
2,300,518	-		DZA65_RS10865	0.21	-1.2
2,300,518	-		DZA65_RS10865	0.21	-0.8
2,300,518	-		DZA65_RS10865	0.21	-2.1
2,300,518	-		DZA65_RS10865	0.21	+0.4
2,300,518	-		DZA65_RS10865	0.21	-0.5
2,300,563	-		DZA65_RS10865	0.26	-1.4
2,300,563	-		DZA65_RS10865	0.26	-1.1
2,300,616	-		DZA65_RS10865	0.32	+0.4
2,300,696	+		DZA65_RS10865	0.41	-1.8
2,300,697	-		DZA65_RS10865	0.41	-0.8
2,300,706	+		DZA65_RS10865	0.42	+0.2
2,300,706	+		DZA65_RS10865	0.42	+0.8
2,300,713	+		DZA65_RS10865	0.42	+0.9
2,300,838	+		DZA65_RS10865	0.56	+2.8
2,300,874	+		DZA65_RS10865	0.60	-0.8
2,300,874	+		DZA65_RS10865	0.60	+1.2
2,300,874	+		DZA65_RS10865	0.60	+0.2
2,300,874	+		DZA65_RS10865	0.60	-0.7
2,300,874	+		DZA65_RS10865	0.60	-1.6
2,300,874	+		DZA65_RS10865	0.60	-0.7
2,300,874	+		DZA65_RS10865	0.60	+1.0
2,300,874	+		DZA65_RS10865	0.60	-0.5
2,300,875	-		DZA65_RS10865	0.60	-1.4
2,300,875	-		DZA65_RS10865	0.60	-1.0
2,300,875	-				+1.5
2,300,875	-		DZA65_RS10865	0.60	+0.2
2,300,875	-		DZA65_RS10865	0.60	+0.2
2,300,898	-		DZA65_RS10865	0.63	+0.2
2,300,921	-		DZA65_RS10865	0.65	-0.5
2,300,921	-		DZA65_RS10865	0.65	+0.4
2,300,921	-		DZA65_RS10865	0.65	+1.2
2,300,978	+		DZA65_RS10865	0.71	+0.5
2,301,024	+		DZA65_RS10865	0.76	+0.4
2,301,024	+		DZA65_RS10865	0.76	-2.6
2,301,024	+		DZA65_RS10865	0.76	-0.5
2,301,025	-		DZA65_RS10865	0.76	-0.3
2,301,025	-		DZA65_RS10865	0.76	+0.9
2,301,025	-		DZA65_RS10865	0.76	+0.2
2,301,025	-		DZA65_RS10865	0.76	-0.0
2,301,050	+		DZA65_RS10865	0.79	-0.0
2,301,051	-		DZA65_RS10865	0.79	+0.2
2,301,062	+		DZA65_RS10865	0.80	+0.6
2,301,063	-		DZA65_RS10865	0.80	+1.2
2,301,136	-		DZA65_RS10865	0.88	-0.5
2,301,136	-		DZA65_RS10865	0.88	-0.2
2,301,210	+				-0.8
2,301,210	+				-3.2
2,301,211	-				-0.6
2,301,273	-				+0.5
2,301,291	-				-1.3
2,301,440	+		DZA65_RS10870	0.20	-2.7
2,301,441	-		DZA65_RS10870	0.20	-0.5
2,301,441	-		DZA65_RS10870	0.20	-0.3
2,301,441	-		DZA65_RS10870	0.20	-0.7
2,301,464	+		DZA65_RS10870	0.23	-0.2
2,301,464	+		DZA65_RS10870	0.23	+0.7
2,301,464	+		DZA65_RS10870	0.23	+0.0
2,301,464	+		DZA65_RS10870	0.23	+0.8
2,301,465	-		DZA65_RS10870	0.23	+0.7
2,301,465	-		DZA65_RS10870	0.23	-0.2
2,301,485	+		DZA65_RS10870	0.25	+0.3
2,301,485	+		DZA65_RS10870	0.25	+0.6
2,301,485	+		DZA65_RS10870	0.25	-0.5
2,301,486	-		DZA65_RS10870	0.25	-2.0
2,301,486	-		DZA65_RS10870	0.25	+0.2
2,301,501	+		DZA65_RS10870	0.27	-0.6
2,301,502	-		DZA65_RS10870	0.27	-1.0
2,301,505	+		DZA65_RS10870	0.28	-0.5
2,301,505	+		DZA65_RS10870	0.28	-0.0
2,301,505	+		DZA65_RS10870	0.28	-0.3
2,301,506	-		DZA65_RS10870	0.28	+0.8
2,301,506	-		DZA65_RS10870	0.28	-0.6
2,301,560	+		DZA65_RS10870	0.34	-0.7
2,301,561	-		DZA65_RS10870	0.34	-2.8
2,301,618	+		DZA65_RS10870	0.40	+0.6
2,301,618	+		DZA65_RS10870	0.40	+0.8
2,301,618	+		DZA65_RS10870	0.40	-0.5
2,301,619	-		DZA65_RS10870	0.40	-0.0
2,301,637	-		DZA65_RS10870	0.42	+0.7
2,301,743	+		DZA65_RS10870	0.54	-0.3
2,301,743	+		DZA65_RS10870	0.54	-0.6
2,301,744	-		DZA65_RS10870	0.54	-0.9
2,301,830	+		DZA65_RS10870	0.63	-0.3
2,301,830	+		DZA65_RS10870	0.63	+0.4
2,301,927	+		DZA65_RS10870	0.74	-2.0
2,301,928	-		DZA65_RS10870	0.74	-1.0
2,301,928	-		DZA65_RS10870	0.74	+1.8
2,302,041	-		DZA65_RS10870	0.86	-0.8
2,302,074	+				-1.5
2,302,075	-				-0.7
2,302,176	+				-1.4
2,302,177	-				-0.5
2,302,188	+				+0.4
2,302,188	+				+0.2
2,302,188	+				+0.2
2,302,189	-				-0.9
2,302,189	-				-0.1
2,302,236	-				-0.4
2,302,236	-				+1.2
2,302,282	-		DZA65_RS10875	0.10	-1.0
2,302,282	-		DZA65_RS10875	0.10	-0.8
2,302,338	+		DZA65_RS10875	0.16	+0.8
2,302,514	-		DZA65_RS10875	0.34	+0.3
2,302,570	-		DZA65_RS10875	0.39	+0.7
2,302,600	-		DZA65_RS10875	0.42	-0.5
2,302,638	+		DZA65_RS10875	0.46	-0.4
2,302,639	-		DZA65_RS10875	0.46	-0.3
2,302,639	-		DZA65_RS10875	0.46	-0.0
2,302,821	+		DZA65_RS10875	0.65	+0.5
2,302,857	+		DZA65_RS10875	0.68	+0.0
2,302,871	+				+0.6
2,302,871	+		DZA65_RS10875	0.70	+0.4
2,302,871	+		DZA65_RS10875	0.70	+1.0
2,302,872	-		DZA65_RS10875	0.70	+0.5
2,302,882	+		DZA65_RS10875	0.71	+1.4
2,302,882	+		DZA65_RS10875	0.71	-2.2
2,302,882	+		DZA65_RS10875	0.71	+1.0
2,302,882	+				+0.8
2,302,882	+		DZA65_RS10875	0.71	-0.5
2,302,883	-		DZA65_RS10875	0.71	-2.6
2,302,883	-		DZA65_RS10875	0.71	-2.8
2,302,903	+		DZA65_RS10875	0.73	-0.1
2,302,903	+		DZA65_RS10875	0.73	-1.0
2,302,945	+		DZA65_RS10875	0.77	-1.0
2,302,946	-		DZA65_RS10875	0.77	-0.2
2,303,162	+				-2.4
2,303,162	+				-0.7
2,303,162	+				+0.8
2,303,162	+				-0.9
2,303,162	+				-0.1
2,303,163	-				-0.3
2,303,163	-				-0.1
2,303,163	-				-0.7
2,303,163	-				+1.0
2,303,163	-				+1.2
2,303,163	-				-1.4
2,303,163	-				-1.4
2,303,163	-				-0.2
2,303,163	-				-0.4
2,303,163	-				+1.4
2,303,163	-				-0.0