Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10440

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,212,450	-		DZA65_RS10435	0.35	-0.1
2,212,546	+		DZA65_RS10435	0.43	+0.6
2,212,546	+		DZA65_RS10435	0.43	+0.1
2,212,546	+		DZA65_RS10435	0.43	-0.3
2,212,546	+		DZA65_RS10435	0.43	+0.4
2,212,546	+		DZA65_RS10435	0.43	+0.7
2,212,547	-		DZA65_RS10435	0.43	+0.8
2,212,547	-		DZA65_RS10435	0.43	+0.0
2,212,547	-		DZA65_RS10435	0.43	-0.7
2,212,686	+		DZA65_RS10435	0.55	+0.7
2,212,780	+		DZA65_RS10435	0.64	-0.6
2,212,956	+		DZA65_RS10435	0.79	-0.0
2,212,960	+		DZA65_RS10435	0.79	-0.5
2,212,960	+		DZA65_RS10435	0.79	-0.7
2,212,960	+		DZA65_RS10435	0.79	-0.3
2,212,960	+		DZA65_RS10435	0.79	+1.6
2,212,960	+		DZA65_RS10435	0.79	-0.7
2,212,960	+		DZA65_RS10435	0.79	+0.3
2,212,960	+		DZA65_RS10435	0.79	-1.3
2,212,960	+		DZA65_RS10435	0.79	+1.3
2,212,960	+		DZA65_RS10435	0.79	-0.1
2,212,960	+		DZA65_RS10435	0.79	+0.1
2,212,960	+		DZA65_RS10435	0.79	+0.8
2,212,961	-		DZA65_RS10435	0.80	+0.4
2,212,961	-		DZA65_RS10435	0.80	-0.7
2,212,961	-		DZA65_RS10435	0.80	-0.2
2,212,961	-		DZA65_RS10435	0.80	-1.0
2,212,961	-		DZA65_RS10435	0.80	+0.3
2,212,961	-		DZA65_RS10435	0.80	-1.1
2,212,961	-		DZA65_RS10435	0.80	-0.3
2,212,961	-		DZA65_RS10435	0.80	-3.3
2,212,961	-		DZA65_RS10435	0.80	-1.3
2,212,961	-		DZA65_RS10435	0.80	+0.5
2,212,961	-		DZA65_RS10435	0.80	+0.6
2,212,963	-		DZA65_RS10435	0.80	+0.3
2,213,053	+		DZA65_RS10435	0.88	-0.6
2,213,053	+		DZA65_RS10435	0.88	+0.5
2,213,053	+		DZA65_RS10435	0.88	-0.7
2,213,054	-		DZA65_RS10435	0.88	+0.3
2,213,191	+				-2.1
2,213,192	-				-0.9
2,213,209	+				-0.7
2,213,301	+				+1.8
2,213,301	+				+0.5
2,213,301	+				+0.2
2,213,302	-				-1.2
2,213,302	-				+0.4
2,213,302	-				-2.1
2,213,322	+				-0.3
2,213,322	+				+0.8
2,213,322	+				-0.7
2,213,322	+				+0.7
2,213,322	+				-0.5
2,213,323	-				+0.5
2,213,323	-				+0.3
2,213,323	-				+0.1
2,213,323	-				-1.2
2,213,323	-				-2.9
2,213,323	-				+0.7
2,213,343	+				+0.8
2,213,343	+				+0.0
2,213,364	+				+0.6
2,213,364	+				+0.8
2,213,365	-				-0.3
2,213,385	+				+0.1
2,213,385	+				+0.9
2,213,386	-				-1.6
2,213,386	-				+0.4
2,213,389	-				-2.0
2,213,389	-				+2.1
2,213,389	-				+2.1
2,213,389	-				+0.6
2,213,423	+				-1.0
2,213,424	-				+0.6
2,213,424	-				-1.3
2,213,487	+				-0.2
2,213,488	-				-0.8
2,213,562	+		DZA65_RS10440	0.12	+0.9
2,213,563	-		DZA65_RS10440	0.12	-1.3
2,213,594	+		DZA65_RS10440	0.14	+0.1
2,213,594	+		DZA65_RS10440	0.14	+0.9
2,213,595	-		DZA65_RS10440	0.14	+0.0
2,213,595	-		DZA65_RS10440	0.14	-0.2
2,213,657	+		DZA65_RS10440	0.18	+1.4
2,213,657	+		DZA65_RS10440	0.18	-1.3
2,213,658	-		DZA65_RS10440	0.19	+0.7
2,213,759	+		DZA65_RS10440	0.26	+0.3
2,213,810	+		DZA65_RS10440	0.30	+0.1
2,213,810	+		DZA65_RS10440	0.30	+1.4
2,213,810	+		DZA65_RS10440	0.30	+0.6
2,213,810	+		DZA65_RS10440	0.30	+0.8
2,213,810	+		DZA65_RS10440	0.30	+0.6
2,213,810	+		DZA65_RS10440	0.30	-0.5
2,213,810	+		DZA65_RS10440	0.30	-1.7
2,213,810	+		DZA65_RS10440	0.30	+0.3
2,213,810	+				-0.1
2,213,811	-		DZA65_RS10440	0.30	+0.2
2,213,811	-		DZA65_RS10440	0.30	+1.5
2,213,925	+		DZA65_RS10440	0.38	+0.3
2,213,925	+		DZA65_RS10440	0.38	+1.0
2,213,925	+		DZA65_RS10440	0.38	-0.4
2,213,925	+		DZA65_RS10440	0.38	-0.3
2,213,926	-		DZA65_RS10440	0.38	-1.6
2,213,926	-		DZA65_RS10440	0.38	-0.3
2,213,926	-		DZA65_RS10440	0.38	+0.2
2,213,926	-		DZA65_RS10440	0.38	-0.5
2,213,926	-		DZA65_RS10440	0.38	+1.4
2,213,926	-		DZA65_RS10440	0.38	-0.7
2,213,926	-		DZA65_RS10440	0.38	+1.2
2,213,926	-		DZA65_RS10440	0.38	-0.3
2,214,236	+		DZA65_RS10440	0.60	+0.3
2,214,236	+		DZA65_RS10440	0.60	-0.1
2,214,237	-		DZA65_RS10440	0.61	-0.3
2,214,237	-		DZA65_RS10440	0.61	+0.7
2,214,237	-		DZA65_RS10440	0.61	+0.1
2,214,240	+		DZA65_RS10440	0.61	+1.1
2,214,240	+		DZA65_RS10440	0.61	+1.6
2,214,240	+		DZA65_RS10440	0.61	+1.0
2,214,241	-		DZA65_RS10440	0.61	+0.4
2,214,291	+				+1.3
2,214,291	+		DZA65_RS10440	0.64	-0.3
2,214,291	+		DZA65_RS10440	0.64	-0.2
2,214,291	+				+0.3
2,214,292	-		DZA65_RS10440	0.65	+0.4
2,214,292	-		DZA65_RS10440	0.65	+0.3
2,214,292	-		DZA65_RS10440	0.65	+0.3
2,214,292	-		DZA65_RS10440	0.65	+0.4
2,214,292	-		DZA65_RS10440	0.65	+3.2
2,214,394	-		DZA65_RS10440	0.72	-3.3
2,214,459	-		DZA65_RS10440	0.77	-0.4
2,214,535	+		DZA65_RS10440	0.82	+0.3
2,214,535	+		DZA65_RS10440	0.82	+0.0
2,214,535	+		DZA65_RS10440	0.82	-0.0
2,214,536	-		DZA65_RS10440	0.82	-1.3
2,214,578	+		DZA65_RS10440	0.85	-1.3
2,214,637	+		DZA65_RS10440	0.90	+0.1
2,214,637	+		DZA65_RS10440	0.90	+2.1
2,214,638	-		DZA65_RS10440	0.90	+0.3
2,214,638	-		DZA65_RS10440	0.90	-0.1
2,214,638	-		DZA65_RS10440	0.90	+0.1
2,214,770	+				-0.0
2,214,771	-				+0.5
2,214,771	-				+1.5
2,214,799	+				-0.2
2,214,799	+				+0.3
2,214,799	+				-0.2
2,214,800	-				+1.1
2,214,906	-		DZA65_RS10445	0.47	-0.7
2,214,938	+		DZA65_RS10445	0.59	+1.4
2,214,938	+		DZA65_RS10445	0.59	+0.8
2,214,938	+		DZA65_RS10445	0.59	-0.3
2,214,938	+		DZA65_RS10445	0.59	-1.9
2,214,938	+				+0.3
2,214,938	+		DZA65_RS10445	0.59	-0.2
2,214,938	+		DZA65_RS10445	0.59	+0.3
2,214,938	+		DZA65_RS10445	0.59	-1.7
2,214,939	-		DZA65_RS10445	0.59	+0.6
2,214,939	-		DZA65_RS10445	0.59	+0.7
2,214,939	-		DZA65_RS10445	0.59	+0.7
2,214,939	-		DZA65_RS10445	0.59	-1.1
2,214,939	-		DZA65_RS10445	0.59	-0.8
2,214,939	-		DZA65_RS10445	0.59	-0.7
2,214,939	-		DZA65_RS10445	0.59	-2.1
2,214,939	-		DZA65_RS10445	0.59	+0.9
2,214,939	-		DZA65_RS10445	0.59	-0.4
2,214,939	-		DZA65_RS10445	0.59	-0.2
2,214,991	+		DZA65_RS10445	0.78	+0.1
2,214,992	-		DZA65_RS10445	0.78	+0.8
2,215,002	-		DZA65_RS10445	0.82	-0.3
2,215,002	-		DZA65_RS10445	0.82	+0.3
2,215,002	-		DZA65_RS10445	0.82	+2.3
2,215,078	+				+0.3
2,215,079	-				-2.3
2,215,079	-				+0.7
2,215,127	-				+0.4
2,215,265	+				+0.9
2,215,265	+				+0.4
2,215,265	+				+1.5
2,215,265	+				+0.4
2,215,265	+				-0.3
2,215,265	+				+0.0
2,215,265	+				+0.3
2,215,265	+				+0.5
2,215,265	+				-0.2
2,215,265	+				-0.4
2,215,265	+				-1.1
2,215,265	+				-0.9
2,215,265	+				-0.8
2,215,265	+				-0.1
2,215,265	+				+0.1
2,215,265	+				+1.6
2,215,266	-				-0.7
2,215,266	-				-0.3
2,215,266	-				-0.6
2,215,266	-				+0.7
2,215,266	-				+0.6
2,215,266	-				-1.3
2,215,266	-				-1.5
2,215,266	-				+0.0
2,215,266	-				+0.4
2,215,267	+				+0.1
2,215,267	+				-1.1
2,215,267	+				+1.1
2,215,267	+				-1.4
2,215,267	+				+1.6
2,215,267	+				+0.3
2,215,268	-				-0.1
2,215,268	-				-0.2
2,215,268	-				-0.5
2,215,268	-				-0.7
2,215,298	+				-0.2
2,215,298	+				+0.3
2,215,298	+				+1.3
2,215,299	-				-1.0
2,215,304	+				+1.3
2,215,305	-				-1.2
2,215,305	-				-0.1
2,215,305	-				+0.4
2,215,559	+		DZA65_RS10450	0.13	+0.1
2,215,560	-		DZA65_RS10450	0.13	-0.1
2,215,587	+		DZA65_RS10450	0.13	+0.4
2,215,662	+		DZA65_RS10450	0.15	+1.3
2,215,662	+		DZA65_RS10450	0.15	-0.3
2,215,662	+		DZA65_RS10450	0.15	+0.7
2,215,662	+		DZA65_RS10450	0.15	-0.7
2,215,662	+		DZA65_RS10450	0.15	-0.6
2,215,662	+		DZA65_RS10450	0.15	-0.2
2,215,662	+		DZA65_RS10450	0.15	-0.6
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	-0.3
2,215,662	+		DZA65_RS10450	0.15	+0.7
2,215,662	+		DZA65_RS10450	0.15	-0.3
2,215,662	+		DZA65_RS10450	0.15	+0.8
2,215,662	+		DZA65_RS10450	0.15	+0.6
2,215,662	+		DZA65_RS10450	0.15	-1.3
2,215,662	+		DZA65_RS10450	0.15	+1.0
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	-0.7
2,215,663	-		DZA65_RS10450	0.15	+0.0
2,215,663	-		DZA65_RS10450	0.15	-0.2
2,215,663	-		DZA65_RS10450	0.15	+0.9
2,215,663	-		DZA65_RS10450	0.15	-0.6
2,215,663	-		DZA65_RS10450	0.15	-1.2
2,215,663	-		DZA65_RS10450	0.15	-0.6
2,215,663	-		DZA65_RS10450	0.15	-0.5
2,215,663	-		DZA65_RS10450	0.15	-1.1
2,215,663	-		DZA65_RS10450	0.15	+0.5
2,215,663	-		DZA65_RS10450	0.15	+1.4
2,215,663	-		DZA65_RS10450	0.15	-0.0
2,215,663	-		DZA65_RS10450	0.15	-0.1
2,215,663	-		DZA65_RS10450	0.15	+0.6
2,215,690	+		DZA65_RS10450	0.16	-0.9
2,215,691	-		DZA65_RS10450	0.16	+0.3
2,215,691	-		DZA65_RS10450	0.16	-0.1