Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10285

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,176,415	+				+0.9
2,176,415	+				+1.3
2,176,415	+				-1.3
2,176,504	-				-2.1
2,176,533	-				+0.3
2,176,568	+				-0.6
2,176,568	+				-0.7
2,176,568	+				-1.3
2,176,568	+				+0.7
2,176,569	-				-0.5
2,176,569	-				+1.7
2,176,569	-				-1.2
2,176,569	-				-1.2
2,176,569	-				+0.0
2,176,569	-				-0.1
2,176,570	+				+1.7
2,176,570	+				-0.5
2,176,571	-				-1.7
2,176,610	-				-0.2
2,176,744	+		DZA65_RS10280	0.13	-0.3
2,176,744	+		DZA65_RS10280	0.13	+0.3
2,176,924	+		DZA65_RS10280	0.37	-0.9
2,176,925	-		DZA65_RS10280	0.37	-2.7
2,176,976	-		DZA65_RS10280	0.44	-0.1
2,176,976	-		DZA65_RS10280	0.44	-1.7
2,177,029	-		DZA65_RS10280	0.51	-1.2
2,177,029	-		DZA65_RS10280	0.51	-0.3
2,177,055	+		DZA65_RS10280	0.54	+1.0
2,177,055	+		DZA65_RS10280	0.54	+0.3
2,177,055	+		DZA65_RS10280	0.54	+1.5
2,177,055	+		DZA65_RS10280	0.54	+1.3
2,177,055	+		DZA65_RS10280	0.54	-0.7
2,177,056	-		DZA65_RS10280	0.55	-0.5
2,177,056	-		DZA65_RS10280	0.55	-1.5
2,177,056	-		DZA65_RS10280	0.55	+0.7
2,177,056	-		DZA65_RS10280	0.55	+0.5
2,177,072	+		DZA65_RS10280	0.57	-0.9
2,177,072	+		DZA65_RS10280	0.57	-1.3
2,177,072	+		DZA65_RS10280	0.57	+0.3
2,177,072	+		DZA65_RS10280	0.57	+1.3
2,177,072	+		DZA65_RS10280	0.57	-0.2
2,177,207	+		DZA65_RS10280	0.75	+0.8
2,177,207	+		DZA65_RS10280	0.75	-0.0
2,177,207	+		DZA65_RS10280	0.75	+0.8
2,177,207	+		DZA65_RS10280	0.75	-0.2
2,177,207	+		DZA65_RS10280	0.75	-0.0
2,177,207	+		DZA65_RS10280	0.75	-1.1
2,177,207	+		DZA65_RS10280	0.75	+0.4
2,177,207	+		DZA65_RS10280	0.75	-0.7
2,177,207	+		DZA65_RS10280	0.75	-1.2
2,177,207	+		DZA65_RS10280	0.75	+0.4
2,177,208	-		DZA65_RS10280	0.75	+0.3
2,177,208	-		DZA65_RS10280	0.75	-0.8
2,177,208	-		DZA65_RS10280	0.75	-0.0
2,177,208	-		DZA65_RS10280	0.75	+0.3
2,177,208	-		DZA65_RS10280	0.75	-0.9
2,177,208	-		DZA65_RS10280	0.75	-0.7
2,177,208	-		DZA65_RS10280	0.75	-0.7
2,177,208	-		DZA65_RS10280	0.75	+0.3
2,177,208	-		DZA65_RS10280	0.75	-0.2
2,177,208	-		DZA65_RS10280	0.75	+1.1
2,177,209	+		DZA65_RS10280	0.75	-1.6
2,177,209	+		DZA65_RS10280	0.75	+0.3
2,177,210	-		DZA65_RS10280	0.75	-0.7
2,177,304	+		DZA65_RS10280	0.87	+1.5
2,177,304	+		DZA65_RS10280	0.87	-0.3
2,177,304	+		DZA65_RS10280	0.87	+0.3
2,177,304	+		DZA65_RS10280	0.87	-0.5
2,177,305	-		DZA65_RS10280	0.88	-0.6
2,177,305	-		DZA65_RS10280	0.88	+0.0
2,177,305	-		DZA65_RS10280	0.88	-1.1
2,177,308	+		DZA65_RS10280	0.88	+0.7
2,177,308	+		DZA65_RS10280	0.88	-1.1
2,177,308	+		DZA65_RS10280	0.88	+0.0
2,177,309	-		DZA65_RS10280	0.88	-0.9
2,177,309	-		DZA65_RS10280	0.88	-1.0
2,177,396	+				+0.2
2,177,397	-				-0.9
2,177,397	-				+0.1
2,177,408	+				+0.3
2,177,408	+				-0.6
2,177,408	+				-1.2
2,177,408	+				+0.3
2,177,409	-				-1.6
2,177,409	-				-0.9
2,177,415	+				+0.4
2,177,415	+				+1.7
2,177,415	+				+0.3
2,177,415	+				-0.1
2,177,415	+				+2.0
2,177,415	+				+0.8
2,177,416	-				-0.2
2,177,416	-				-0.6
2,177,416	-				-1.2
2,177,416	-				+0.5
2,177,416	-				-0.7
2,177,416	-				+0.8
2,177,416	-				-0.2
2,177,416	-				+1.7
2,177,549	+				-0.7
2,177,549	+		DZA65_RS10285	0.15	-1.3
2,177,818	-				+0.8
2,177,858	-		DZA65_RS10285	0.48	-0.2
2,178,053	-		DZA65_RS10285	0.68	+0.9
2,178,068	+		DZA65_RS10285	0.70	-0.0
2,178,069	-		DZA65_RS10285	0.70	-0.0
2,178,069	-		DZA65_RS10285	0.70	+1.7
2,178,296	+				+1.3
2,178,296	+				-1.3
2,178,296	+				-0.0
2,178,296	+				-0.0
2,178,297	-				-0.5
2,178,297	-				-1.7
2,178,297	-				+0.3
2,178,297	-				-0.3
2,178,346	+				+0.9
2,178,347	-				+1.2
2,178,347	-				-1.7
2,178,357	+				+0.9
2,178,408	+				-1.2
2,178,408	+				-0.2
2,178,409	-				+0.4
2,178,409	-				+1.1
2,178,409	-				-0.0
2,178,453	+				-2.6
2,178,453	+				+1.6
2,178,453	+				-1.1
2,178,453	+				-0.5
2,178,453	+				-1.4
2,178,453	+				-0.5
2,178,453	+				+0.7
2,178,453	+				-1.3
2,178,453	+				-0.6
2,178,453	+				-2.1
2,178,453	+				-0.1
2,178,453	+				-0.2
2,178,453	+				-1.7
2,178,454	-				-0.1
2,178,454	-				-0.3
2,178,458	+				+1.0
2,178,459	-				+0.8
2,178,633	+		DZA65_RS10290	0.19	+0.5
2,178,634	-				+1.1
2,178,634	-		DZA65_RS10290	0.19	-3.1
2,178,634	-		DZA65_RS10290	0.19	-2.6
2,178,634	-		DZA65_RS10290	0.19	+0.7
2,178,678	+		DZA65_RS10290	0.24	-1.3
2,178,678	+		DZA65_RS10290	0.24	-1.1
2,178,679	-		DZA65_RS10290	0.24	-3.2
2,178,679	-		DZA65_RS10290	0.24	+0.3
2,178,681	+		DZA65_RS10290	0.24	-0.8
2,178,682	-		DZA65_RS10290	0.24	-0.2
2,178,793	+		DZA65_RS10290	0.36	-0.0
2,178,793	+		DZA65_RS10290	0.36	-1.3
2,178,793	+		DZA65_RS10290	0.36	-0.1
2,178,793	+		DZA65_RS10290	0.36	-2.1
2,178,793	+		DZA65_RS10290	0.36	-0.9
2,178,793	+		DZA65_RS10290	0.36	+0.9
2,178,793	+		DZA65_RS10290	0.36	+0.3
2,178,793	+		DZA65_RS10290	0.36	-1.1
2,178,793	+		DZA65_RS10290	0.36	+1.0
2,178,794	-		DZA65_RS10290	0.36	+1.1
2,178,794	-		DZA65_RS10290	0.36	+0.7
2,178,794	-		DZA65_RS10290	0.36	-0.7
2,178,794	-		DZA65_RS10290	0.36	-1.1
2,178,794	-		DZA65_RS10290	0.36	-0.2
2,178,794	-		DZA65_RS10290	0.36	+0.7
2,178,794	-		DZA65_RS10290	0.36	+1.4
2,178,794	-		DZA65_RS10290	0.36	+1.1
2,178,795	+		DZA65_RS10290	0.36	+2.0
2,178,795	+		DZA65_RS10290	0.36	+0.3
2,178,796	-		DZA65_RS10290	0.36	-1.2
2,178,796	-		DZA65_RS10290	0.36	+0.3
2,178,796	-		DZA65_RS10290	0.36	+0.3
2,178,929	-				+0.6
2,178,933	-		DZA65_RS10290	0.51	-0.5
2,178,981	-		DZA65_RS10290	0.56	-1.1
2,178,990	+		DZA65_RS10290	0.57	+1.3
2,178,990	+		DZA65_RS10290	0.57	+0.6
2,178,990	+		DZA65_RS10290	0.57	-1.6
2,178,990	+		DZA65_RS10290	0.57	-0.9
2,178,990	+		DZA65_RS10290	0.57	+0.3
2,178,990	+		DZA65_RS10290	0.57	+1.7
2,178,991	-		DZA65_RS10290	0.57	+0.3
2,178,991	-		DZA65_RS10290	0.57	-0.3
2,178,991	-		DZA65_RS10290	0.57	+0.1
2,178,991	-		DZA65_RS10290	0.57	-0.2
2,178,991	-		DZA65_RS10290	0.57	-0.3
2,179,095	-		DZA65_RS10290	0.69	+0.3
2,179,211	-		DZA65_RS10290	0.81	-0.7