Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,173,852	-				-0.3
2,173,905	+				-0.8
2,173,906	-				+1.1
2,173,906	-				-1.1
2,173,906	-				-0.5
2,173,922	-				+2.0
2,173,922	-				+0.7
2,173,931	-				+0.7
2,173,937	+				+0.3
2,173,937	+				+0.3
2,173,938	-				-0.3
2,173,953	+				-1.9
2,173,953	+				+1.3
2,173,953	+				+0.4
2,173,954	-				-0.1
2,173,960	+				-1.9
2,173,960	+				+0.2
2,173,960	+				-0.1
2,173,960	+				-0.7
2,173,960	+				-2.6
2,173,960	+				+0.0
2,173,961	-				-0.6
2,173,961	-				+0.7
2,173,962	+				+0.4
2,173,962	+				-1.2
2,173,962	+				-0.2
2,173,962	+				+1.8
2,173,962	+				+0.6
2,173,962	+				-2.3
2,173,962	+				-0.3
2,173,963	-				-1.7
2,173,963	-				+0.1
2,173,963	-				-0.5
2,173,963	-				-2.3
2,173,963	-				-0.0
2,174,167	+		DZA65_RS10265	0.43	+0.4
2,174,167	+		DZA65_RS10265	0.43	-0.5
2,174,167	+		DZA65_RS10265	0.43	-0.5
2,174,168	-		DZA65_RS10265	0.43	-1.1
2,174,178	-		DZA65_RS10265	0.45	-0.6
2,174,178	-		DZA65_RS10265	0.45	-0.8
2,174,179	+		DZA65_RS10265	0.45	+0.3
2,174,179	+		DZA65_RS10265	0.45	-1.1
2,174,179	+		DZA65_RS10265	0.45	-0.1
2,174,179	+		DZA65_RS10265	0.45	+0.9
2,174,179	+		DZA65_RS10265	0.45	-0.5
2,174,179	+		DZA65_RS10265	0.45	+1.6
2,174,179	+		DZA65_RS10265	0.45	+0.7
2,174,180	-		DZA65_RS10265	0.45	+0.3
2,174,190	+		DZA65_RS10265	0.47	+0.4
2,174,208	+				+1.8
2,174,209	-		DZA65_RS10265	0.51	-1.1
2,174,337	+		DZA65_RS10265	0.77	+0.2
2,174,340	+		DZA65_RS10265	0.78	-0.9
2,174,340	+		DZA65_RS10265	0.78	-0.2
2,174,341	-		DZA65_RS10265	0.78	-0.3
2,174,341	-		DZA65_RS10265	0.78	-0.5
2,174,403	+				+0.3
2,174,403	+				-0.6
2,174,416	+				+0.9
2,174,416	+				-0.5
2,174,416	+				+2.0
2,174,417	-				+0.0
2,174,452	+				+0.1
2,174,452	+				-0.9
2,174,452	+				-0.5
2,174,452	+				+0.6
2,174,452	+				-0.7
2,174,452	+				+2.1
2,174,453	-				+0.8
2,174,454	+				-0.2
2,174,454	+				+0.8
2,174,454	+				-1.7
2,174,455	-				-0.2
2,174,455	-				+0.3
2,174,455	-				-0.7
2,174,455	-				-0.9
2,174,455	-				+0.3
2,174,477	+				+3.4
2,174,478	-				+1.1
2,174,478	-				-0.3
2,174,493	+				-0.4
2,174,493	+				-0.5
2,174,493	+				-0.7
2,174,493	+				-0.2
2,174,497	-				-1.6
2,174,538	+				+0.3
2,174,550	-				-0.5
2,174,583	-				-0.7
2,174,589	+				-0.2
2,174,590	-				-0.1
2,174,590	-				+1.5
2,174,598	+				+2.4
2,174,598	+				+0.2
2,174,598	+				+0.0
2,174,598	+				+0.3
2,174,599	-				-0.2
2,174,599	-				-0.3
2,174,599	-				+0.1
2,174,599	-				-0.3
2,174,599	-				-0.1
2,174,620	+				-0.6
2,174,620	+				+0.3
2,174,621	-				+2.3
2,174,662	+				-0.2
2,174,709	+				+0.0
2,174,798	+		DZA65_RS10270	0.21	+1.0
2,174,799	-		DZA65_RS10270	0.22	+1.4
2,174,823	-		DZA65_RS10270	0.25	+0.3
2,174,922	-		DZA65_RS10270	0.41	-0.0
2,174,922	-		DZA65_RS10270	0.41	+1.7
2,175,025	+		DZA65_RS10270	0.57	+1.2
2,175,026	-		DZA65_RS10270	0.57	+0.7
2,175,026	-		DZA65_RS10270	0.57	+0.2
2,175,026	-		DZA65_RS10270	0.57	-0.6
2,175,053	+		DZA65_RS10270	0.61	+1.3
2,175,053	+		DZA65_RS10270	0.61	-2.6
2,175,089	+		DZA65_RS10270	0.67	+0.6
2,175,089	+		DZA65_RS10270	0.67	-0.2
2,175,089	+		DZA65_RS10270	0.67	+0.4
2,175,089	+		DZA65_RS10270	0.67	+0.3
2,175,089	+		DZA65_RS10270	0.67	+0.3
2,175,089	+		DZA65_RS10270	0.67	-0.2
2,175,089	+		DZA65_RS10270	0.67	+0.9
2,175,089	+		DZA65_RS10270	0.67	-0.7
2,175,089	+		DZA65_RS10270	0.67	+0.1
2,175,089	+		DZA65_RS10270	0.67	+0.9
2,175,090	-		DZA65_RS10270	0.67	+1.7
2,175,090	-		DZA65_RS10270	0.67	+1.1
2,175,090	-		DZA65_RS10270	0.67	+1.6
2,175,090	-		DZA65_RS10270	0.67	+1.1
2,175,091	+		DZA65_RS10270	0.67	-1.1
2,175,091	+		DZA65_RS10270	0.67	+1.0
2,175,091	+		DZA65_RS10270	0.67	+0.4
2,175,092	-		DZA65_RS10270	0.67	-0.9
2,175,092	-		DZA65_RS10270	0.67	+0.9
2,175,092	-		DZA65_RS10270	0.67	+0.3
2,175,114	+		DZA65_RS10270	0.71	+0.3
2,175,114	+		DZA65_RS10270	0.71	+0.8
2,175,124	+		DZA65_RS10270	0.72	-0.3
2,175,153	-		DZA65_RS10270	0.77	+0.1
2,175,153	-		DZA65_RS10270	0.77	+0.8
2,175,196	+		DZA65_RS10270	0.84	+2.3
2,175,196	+		DZA65_RS10270	0.84	-0.7
2,175,196	+		DZA65_RS10270	0.84	-0.2
2,175,197	-		DZA65_RS10270	0.84	+1.9
2,175,197	-		DZA65_RS10270	0.84	+0.5
2,175,197	-		DZA65_RS10270	0.84	-1.3
2,175,197	-		DZA65_RS10270	0.84	+1.0
2,175,199	+		DZA65_RS10270	0.84	-0.2
2,175,199	+		DZA65_RS10270	0.84	+0.6
2,175,199	+				+1.1
2,175,200	-		DZA65_RS10270	0.84	-1.4
2,175,261	+				+0.3
2,175,261	+				+1.4
2,175,265	-				+0.4
2,175,371	-				-0.3
2,175,374	-				-0.6
2,175,379	+				-0.0
2,175,380	-				-0.3
2,175,380	-				-2.1
2,175,380	-				+1.3
2,175,380	-				+1.3
2,175,427	+				-1.1
2,175,428	-				-1.7
2,175,444	+				-0.1
2,175,445	-				+0.3
2,175,468	+				-0.6
2,175,469	-				-0.6
2,175,476	-				-0.0
2,175,476	-				-1.6
2,175,613	+				+0.3
2,175,613	+				-1.3
2,175,627	+				-2.6
2,175,627	+				-0.6
2,175,627	+				-1.7
2,175,627	+				-1.0
2,175,628	-				-1.4
2,175,629	+				+0.4
2,175,629	+				+1.2
2,175,630	-				+1.0
2,175,643	+				+0.3
2,175,644	-				-0.1
2,175,659	-				-0.7
2,175,706	-				-1.0
2,175,712	-				+0.7
2,175,712	-				-1.3
2,175,741	-				-1.0
2,175,742	+				-1.7
2,175,742	+				+0.3
2,175,746	+				-0.1
2,175,747	-				-0.9
2,175,835	-				-0.2
2,175,837	+				-0.1
2,175,838	-				-2.9
2,175,846	+				+0.9
2,175,900	+				+0.5
2,175,900	+				-0.4
2,175,900	+				-0.6
2,175,900	+				-1.9
2,175,900	+				+0.7
2,175,901	-				-0.7
2,175,901	-				-0.6
2,175,922	+		DZA65_RS10275	0.13	-1.0
2,176,065	+		DZA65_RS10275	0.36	-0.7
2,176,066	-		DZA65_RS10275	0.36	-2.1
2,176,066	-		DZA65_RS10275	0.36	-0.2
2,176,098	+		DZA65_RS10275	0.41	-0.8
2,176,098	+		DZA65_RS10275	0.41	-0.4
2,176,098	+		DZA65_RS10275	0.41	-0.4
2,176,098	+		DZA65_RS10275	0.41	-3.2
2,176,098	+		DZA65_RS10275	0.41	-0.6
2,176,098	+		DZA65_RS10275	0.41	-1.4
2,176,098	+		DZA65_RS10275	0.41	-1.1
2,176,098	+		DZA65_RS10275	0.41	-0.2
2,176,098	+		DZA65_RS10275	0.41	+0.6
2,176,098	+				+1.7
2,176,098	+		DZA65_RS10275	0.41	-0.5
2,176,098	+		DZA65_RS10275	0.41	-1.5
2,176,098	+		DZA65_RS10275	0.41	-0.1
2,176,098	+		DZA65_RS10275	0.41	+0.5
2,176,098	+		DZA65_RS10275	0.41	+0.3
2,176,098	+		DZA65_RS10275	0.41	-0.0
2,176,098	+		DZA65_RS10275	0.41	+0.0
2,176,098	+		DZA65_RS10275	0.41	-1.0
2,176,099	-		DZA65_RS10275	0.41	-0.2
2,176,099	-		DZA65_RS10275	0.41	+0.0
2,176,099	-		DZA65_RS10275	0.41	-0.0
2,176,099	-		DZA65_RS10275	0.41	+0.7
2,176,099	-		DZA65_RS10275	0.41	-0.3
2,176,099	-		DZA65_RS10275	0.41	-0.2
2,176,099	-		DZA65_RS10275	0.41	-0.5
2,176,099	-		DZA65_RS10275	0.41	+0.4
2,176,099	-		DZA65_RS10275	0.41	-0.3
2,176,099	-		DZA65_RS10275	0.41	+1.6
2,176,099	-		DZA65_RS10275	0.41	-0.2
2,176,099	-		DZA65_RS10275	0.41	+0.3
2,176,099	-		DZA65_RS10275	0.41	-0.0
2,176,293	+		DZA65_RS10275	0.73	-0.0
2,176,294	-		DZA65_RS10275	0.73	-0.4
2,176,294	-		DZA65_RS10275	0.73	+0.3
2,176,294	-		DZA65_RS10275	0.73	+1.1