Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10025

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,122,245	+				+0.7
2,122,246	-				+1.7
2,122,268	+				+0.4
2,122,272	+				+0.2
2,122,273	-				-1.1
2,122,276	+				+0.8
2,122,276	+				-0.9
2,122,276	+				-3.1
2,122,276	+				+1.2
2,122,276	+				-2.2
2,122,277	-				-0.3
2,122,277	-				+0.1
2,122,277	-				-0.2
2,122,277	-				+1.0
2,122,303	-				+0.8
2,122,303	-				+0.9
2,122,306	+				+0.5
2,122,307	-				-1.1
2,122,339	+				-2.1
2,122,355	+				-0.2
2,122,374	-				-0.1
2,122,446	+		DZA65_RS10020	0.15	+0.1
2,122,446	+		DZA65_RS10020	0.15	-1.2
2,122,447	-		DZA65_RS10020	0.15	+0.7
2,122,447	-		DZA65_RS10020	0.15	-1.3
2,122,447	-		DZA65_RS10020	0.15	+0.2
2,122,448	+		DZA65_RS10020	0.16	+0.2
2,122,448	+		DZA65_RS10020	0.16	-1.6
2,122,448	+		DZA65_RS10020	0.16	-0.5
2,122,449	-		DZA65_RS10020	0.16	-0.4
2,122,533	+		DZA65_RS10020	0.30	-0.2
2,122,533	+		DZA65_RS10020	0.30	-1.8
2,122,533	+		DZA65_RS10020	0.30	+0.5
2,122,533	+		DZA65_RS10020	0.30	-0.2
2,122,534	-		DZA65_RS10020	0.30	-1.3
2,122,550	+		DZA65_RS10020	0.33	+1.0
2,122,550	+		DZA65_RS10020	0.33	-1.8
2,122,568	-		DZA65_RS10020	0.35	-0.3
2,122,614	-		DZA65_RS10020	0.43	+0.7
2,122,629	+		DZA65_RS10020	0.46	-0.3
2,122,629	+		DZA65_RS10020	0.46	-1.1
2,122,629	+		DZA65_RS10020	0.46	+0.5
2,122,629	+		DZA65_RS10020	0.46	-0.8
2,122,630	-		DZA65_RS10020	0.46	+0.7
2,122,630	-		DZA65_RS10020	0.46	-2.1
2,122,630	-		DZA65_RS10020	0.46	-0.8
2,122,630	-		DZA65_RS10020	0.46	-0.6
2,122,632	-		DZA65_RS10020	0.46	+0.2
2,122,632	-		DZA65_RS10020	0.46	+0.1
2,122,641	+		DZA65_RS10020	0.48	+2.2
2,122,641	+		DZA65_RS10020	0.48	-0.9
2,122,642	-		DZA65_RS10020	0.48	-0.6
2,122,642	-		DZA65_RS10020	0.48	-0.4
2,122,642	-		DZA65_RS10020	0.48	+0.1
2,122,642	-		DZA65_RS10020	0.48	+0.7
2,122,642	-		DZA65_RS10020	0.48	+0.6
2,122,675	+		DZA65_RS10020	0.53	-1.5
2,122,676	-		DZA65_RS10020	0.53	-0.5
2,122,683	+		DZA65_RS10020	0.55	+0.0
2,122,683	+		DZA65_RS10020	0.55	+0.2
2,122,683	+		DZA65_RS10020	0.55	-0.1
2,122,683	+		DZA65_RS10020	0.55	+0.4
2,122,683	+		DZA65_RS10020	0.55	-1.8
2,122,684	-		DZA65_RS10020	0.55	+1.6
2,122,684	-		DZA65_RS10020	0.55	+0.1
2,122,684	-		DZA65_RS10020	0.55	+1.0
2,122,686	-		DZA65_RS10020	0.55	+0.2
2,122,686	-		DZA65_RS10020	0.55	-0.4
2,122,686	-		DZA65_RS10020	0.55	-0.6
2,122,686	-		DZA65_RS10020	0.55	+1.2
2,122,686	-		DZA65_RS10020	0.55	-1.5
2,122,686	-		DZA65_RS10020	0.55	+0.6
2,122,689	+		DZA65_RS10020	0.56	-0.9
2,122,689	+		DZA65_RS10020	0.56	-0.1
2,122,690	-		DZA65_RS10020	0.56	-0.9
2,122,710	-				+0.8
2,122,726	-		DZA65_RS10020	0.62	-0.1
2,122,726	-		DZA65_RS10020	0.62	-1.6
2,122,739	+		DZA65_RS10020	0.64	-1.3
2,122,739	+		DZA65_RS10020	0.64	-0.0
2,122,739	+		DZA65_RS10020	0.64	+0.5
2,122,739	+		DZA65_RS10020	0.64	-0.1
2,122,740	-				-0.8
2,122,740	-		DZA65_RS10020	0.64	+0.0
2,122,785	+		DZA65_RS10020	0.71	+0.4
2,122,794	+		DZA65_RS10020	0.73	-0.1
2,122,794	+		DZA65_RS10020	0.73	+0.1
2,122,795	-		DZA65_RS10020	0.73	-0.8
2,122,795	-		DZA65_RS10020	0.73	-0.2
2,122,795	-		DZA65_RS10020	0.73	-1.0
2,122,825	+		DZA65_RS10020	0.78	-1.3
2,122,825	+		DZA65_RS10020	0.78	-0.7
2,122,825	+		DZA65_RS10020	0.78	-0.4
2,122,825	+		DZA65_RS10020	0.78	+0.2
2,122,841	+		DZA65_RS10020	0.81	-2.6
2,122,841	+		DZA65_RS10020	0.81	-0.8
2,122,842	-				-1.8
2,122,842	-		DZA65_RS10020	0.81	+0.1
2,122,845	+		DZA65_RS10020	0.81	+0.2
2,122,845	+		DZA65_RS10020	0.81	+0.2
2,122,845	+		DZA65_RS10020	0.81	+0.8
2,122,845	+		DZA65_RS10020	0.81	+2.8
2,122,845	+		DZA65_RS10020	0.81	-1.1
2,122,846	-		DZA65_RS10020	0.82	+0.5
2,122,846	-		DZA65_RS10020	0.82	-0.5
2,122,846	-		DZA65_RS10020	0.82	-0.3
2,122,846	-		DZA65_RS10020	0.82	-0.6
2,122,846	-		DZA65_RS10020	0.82	-1.1
2,122,846	-		DZA65_RS10020	0.82	+1.5
2,122,846	-		DZA65_RS10020	0.82	-2.3
2,122,846	-		DZA65_RS10020	0.82	+0.4
2,122,846	-		DZA65_RS10020	0.82	-1.3
2,122,846	-		DZA65_RS10020	0.82	+0.7
2,122,860	+		DZA65_RS10020	0.84	-0.1
2,122,951	+				-0.8
2,122,951	+				+1.8
2,122,951	+				-1.8
2,122,952	-				+1.8
2,122,952	-				-0.5
2,122,952	-				+1.7
2,122,967	+				+0.3
2,122,989	+				+0.4
2,123,019	+				+0.8
2,123,101	-				-0.4
2,123,101	-				+0.7
2,123,156	+				-1.3
2,123,157	-				-0.3
2,123,275	+				-1.1
2,123,319	+		DZA65_RS10025	0.13	-1.8
2,123,319	+		DZA65_RS10025	0.13	-1.6
2,123,320	-		DZA65_RS10025	0.13	+0.5
2,123,436	+		DZA65_RS10025	0.32	+0.5
2,123,437	-		DZA65_RS10025	0.33	+0.2
2,123,451	+		DZA65_RS10025	0.35	-1.2
2,123,451	+				-2.1
2,123,477	-		DZA65_RS10025	0.39	-0.8
2,123,620	+				-1.8
2,123,691	+		DZA65_RS10025	0.74	-1.2
2,123,727	-		DZA65_RS10025	0.80	+0.5
2,123,745	+		DZA65_RS10025	0.83	-0.6
2,123,745	+		DZA65_RS10025	0.83	-0.8
2,123,783	+		DZA65_RS10025	0.89	-3.1
2,123,783	+		DZA65_RS10025	0.89	-0.6
2,123,784	-		DZA65_RS10025	0.89	-0.8
2,123,784	-				-0.8
2,123,784	-		DZA65_RS10025	0.89	-0.8
2,123,878	-				-0.2
2,124,159	+		DZA65_RS10030	0.40	-0.3
2,124,188	+		DZA65_RS10030	0.44	-0.8
2,124,188	+		DZA65_RS10030	0.44	-1.1
2,124,256	+		DZA65_RS10030	0.53	-0.8
2,124,468	+		DZA65_RS10030	0.80	-0.8
2,124,473	+		DZA65_RS10030	0.81	-1.5
2,124,571	+				+0.1
2,124,571	+				+0.8
2,124,699	+		DZA65_RS10035	0.13	-0.2
2,124,794	+		DZA65_RS10035	0.26	-1.8
2,124,794	+		DZA65_RS10035	0.26	-2.3