Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09850

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,075,189	-		DZA65_RS09845	0.43	-0.5
2,075,189	-		DZA65_RS09845	0.43	-0.6
2,075,316	+		DZA65_RS09845	0.60	+0.2
2,075,337	-		DZA65_RS09845	0.63	+1.0
2,075,337	-		DZA65_RS09845	0.63	-1.8
2,075,415	+		DZA65_RS09845	0.74	-0.8
2,075,415	+		DZA65_RS09845	0.74	+0.2
2,075,416	-		DZA65_RS09845	0.74	-0.0
2,075,476	+		DZA65_RS09845	0.82	-0.6
2,075,476	+		DZA65_RS09845	0.82	-0.3
2,075,573	+				-0.5
2,075,574	-				-0.9
2,075,574	-				+0.4
2,075,583	+				-0.3
2,075,583	+				-0.2
2,075,584	-				-2.3
2,075,584	-				-1.1
2,075,584	-				-0.6
2,075,584	-				+0.6
2,075,593	+				-0.0
2,075,593	+				+0.2
2,075,601	+				+0.2
2,075,623	-		DZA65_RS22860	0.10	+1.0
2,075,645	-		DZA65_RS22860	0.16	+0.9
2,075,658	+		DZA65_RS22860	0.19	-0.1
2,075,659	-		DZA65_RS22860	0.20	+0.9
2,075,659	-		DZA65_RS22860	0.20	-0.1
2,075,659	-		DZA65_RS22860	0.20	-1.4
2,075,694	-		DZA65_RS22860	0.28	+0.6
2,075,702	+		DZA65_RS22860	0.31	-0.6
2,075,702	+		DZA65_RS22860	0.31	+0.1
2,075,702	+		DZA65_RS22860	0.31	+1.2
2,075,702	+		DZA65_RS22860	0.31	+1.4
2,075,702	+		DZA65_RS22860	0.31	+0.2
2,075,702	+		DZA65_RS22860	0.31	-0.4
2,075,703	-		DZA65_RS22860	0.31	-3.1
2,075,703	-		DZA65_RS22860	0.31	+0.9
2,075,703	-		DZA65_RS22860	0.31	-0.0
2,075,703	-		DZA65_RS22860	0.31	+0.5
2,075,703	-		DZA65_RS22860	0.31	-0.5
2,075,703	-		DZA65_RS22860	0.31	+0.1
2,075,797	+		DZA65_RS22860	0.55	-0.2
2,075,797	+				+0.2
2,075,798	-		DZA65_RS22860	0.55	-0.0
2,075,814	-		DZA65_RS22860	0.59	+0.6
2,075,822	-		DZA65_RS22860	0.61	+2.6
2,075,822	-		DZA65_RS22860	0.61	+0.2
2,075,843	-		DZA65_RS22860	0.66	-0.4
2,075,843	-		DZA65_RS22860	0.66	-1.3
2,075,846	-		DZA65_RS22860	0.67	+0.2
2,075,872	+		DZA65_RS22860	0.74	+0.2
2,075,890	+		DZA65_RS22860	0.78	+2.0
2,075,891	-		DZA65_RS22860	0.79	+0.1
2,075,891	-		DZA65_RS22860	0.79	-0.5
2,075,891	-		DZA65_RS22860	0.79	+1.8
2,075,891	-		DZA65_RS22860	0.79	+0.2
2,075,917	+		DZA65_RS22860	0.85	+0.9
2,075,917	+		DZA65_RS22860	0.85	+0.4
2,075,917	+		DZA65_RS22860	0.85	+0.1
2,075,918	-		DZA65_RS22860	0.85	+1.5
2,075,918	-		DZA65_RS22860	0.85	+0.2
2,075,956	+				+0.1
2,075,956	+				-1.6
2,075,956	+				-0.6
2,075,956	+				-0.8
2,075,956	+				+0.2
2,075,956	+				-1.3
2,075,957	-				-2.1
2,075,957	-				-1.8
2,075,957	-				-1.8
2,075,957	-				+0.8
2,075,958	+				+0.2
2,075,958	+				-0.9
2,075,958	+				-0.3
2,075,958	+				-0.1
2,075,958	+				-0.0
2,075,958	+				-0.8
2,075,958	+				-2.1
2,075,958	+				+0.4
2,075,958	+				-0.6
2,075,958	+				-0.8
2,075,958	+				+2.2
2,075,958	+				-2.3
2,075,958	+				+1.0
2,075,958	+				+0.7
2,075,958	+				+0.7
2,075,958	+				-0.0
2,075,958	+				+1.1
2,075,958	+				+0.4
2,075,958	+				+0.5
2,075,958	+				-0.8
2,075,958	+				-0.8
2,075,958	+				+0.8
2,075,958	+				-1.6
2,075,958	+				-1.0
2,075,958	+				+0.8
2,075,958	+				-0.0
2,075,958	+				+0.7
2,075,958	+				+0.2
2,075,959	-				-0.2
2,075,959	-				-2.3
2,075,959	-				-0.8
2,075,959	-				-0.8
2,075,959	-				-0.4
2,075,959	-				+0.7
2,075,959	-				-3.8
2,075,959	-				+0.5
2,075,959	-				-1.0
2,075,959	-				+0.2
2,075,959	-				-0.1
2,075,959	-				+0.2
2,075,959	-				+0.7
2,075,959	-				+1.1
2,075,959	-				-3.3
2,075,959	-				+0.1
2,075,968	+				+1.5
2,075,968	+				+0.2
2,075,969	-				+0.8
2,076,017	+				-0.0
2,076,018	-				+0.7
2,076,049	-				+0.2
2,076,074	+				-0.5
2,076,074	+				+3.3
2,076,074	+				-1.1
2,076,075	-				+0.6
2,076,166	-				-0.6
2,076,166	-				+0.6
2,076,183	+		DZA65_RS09850	0.12	-1.2
2,076,249	+		DZA65_RS09850	0.19	+0.5
2,076,249	+		DZA65_RS09850	0.19	-1.2
2,076,249	+		DZA65_RS09850	0.19	-0.1
2,076,249	+		DZA65_RS09850	0.19	-0.2
2,076,249	+		DZA65_RS09850	0.19	+0.2
2,076,249	+		DZA65_RS09850	0.19	-1.1
2,076,250	-		DZA65_RS09850	0.20	+1.2
2,076,250	-		DZA65_RS09850	0.20	+0.2
2,076,250	-		DZA65_RS09850	0.20	-0.9
2,076,250	-		DZA65_RS09850	0.20	-0.3
2,076,250	-		DZA65_RS09850	0.20	+1.1
2,076,312	+		DZA65_RS09850	0.27	+0.5
2,076,312	+		DZA65_RS09850	0.27	+0.6
2,076,408	+		DZA65_RS09850	0.37	+0.5
2,076,409	-		DZA65_RS09850	0.38	-1.1
2,076,510	+		DZA65_RS09850	0.49	+1.0
2,076,510	+		DZA65_RS09850	0.49	+0.7
2,076,510	+		DZA65_RS09850	0.49	+0.7
2,076,510	+				+2.1
2,076,510	+		DZA65_RS09850	0.49	-0.1
2,076,510	+		DZA65_RS09850	0.49	+0.2
2,076,510	+		DZA65_RS09850	0.49	+0.2
2,076,510	+		DZA65_RS09850	0.49	-0.5
2,076,511	-		DZA65_RS09850	0.49	+0.5
2,076,511	-		DZA65_RS09850	0.49	+0.4
2,076,511	-		DZA65_RS09850	0.49	+0.5
2,076,511	-		DZA65_RS09850	0.49	+0.3
2,076,512	+		DZA65_RS09850	0.49	-0.6
2,076,620	+		DZA65_RS09850	0.61	+0.1
2,076,621	-		DZA65_RS09850	0.62	+0.6
2,076,621	-		DZA65_RS09850	0.62	+1.1
2,076,708	+		DZA65_RS09850	0.71	+0.1
2,076,708	+		DZA65_RS09850	0.71	+0.6
2,076,709	-		DZA65_RS09850	0.72	-1.3
2,076,729	+		DZA65_RS09850	0.74	+0.2
2,076,729	+		DZA65_RS09850	0.74	+0.2
2,076,729	+				+1.5
2,076,823	+		DZA65_RS09850	0.84	+0.7
2,076,823	+		DZA65_RS09850	0.84	-1.6
2,076,824	-		DZA65_RS09850	0.85	+2.2
2,076,861	+		DZA65_RS09850	0.89	-0.0
2,076,861	+		DZA65_RS09850	0.89	-0.1
2,076,861	+		DZA65_RS09850	0.89	-0.6
2,076,919	-				-0.8
2,077,088	+				-0.2
2,077,088	+				+1.2
2,077,089	-				+0.2
2,077,121	-				-0.2
2,077,121	-				-0.2
2,077,308	+		DZA65_RS09855	0.21	+0.9
2,077,309	-		DZA65_RS09855	0.21	-2.3
2,077,309	-		DZA65_RS09855	0.21	+0.6
2,077,334	-		DZA65_RS09855	0.23	+1.0
2,077,334	-		DZA65_RS09855	0.23	+0.9
2,077,334	-		DZA65_RS09855	0.23	-0.6
2,077,353	+		DZA65_RS09855	0.24	-0.5
2,077,354	-		DZA65_RS09855	0.24	+0.7
2,077,354	-		DZA65_RS09855	0.24	+1.0
2,077,354	-		DZA65_RS09855	0.24	+0.9
2,077,354	-		DZA65_RS09855	0.24	+0.5
2,077,362	+		DZA65_RS09855	0.25	+1.4
2,077,362	+		DZA65_RS09855	0.25	+0.8
2,077,362	+		DZA65_RS09855	0.25	+0.5
2,077,397	-		DZA65_RS09855	0.27	-0.2
2,077,475	-		DZA65_RS09855	0.32	-1.0
2,077,493	-		DZA65_RS09855	0.33	+0.2
2,077,502	-		DZA65_RS09855	0.34	+2.1
2,077,502	-		DZA65_RS09855	0.34	+0.8
2,077,502	-		DZA65_RS09855	0.34	+1.0
2,077,537	+		DZA65_RS09855	0.36	-1.2
2,077,719	-		DZA65_RS09855	0.49	-0.2
2,077,719	-		DZA65_RS09855	0.49	-2.1
2,077,819	+		DZA65_RS09855	0.56	-0.9
2,077,820	-		DZA65_RS09855	0.56	-0.3
2,077,820	-		DZA65_RS09855	0.56	+2.6
2,077,820	-		DZA65_RS09855	0.56	-2.1
2,077,820	-		DZA65_RS09855	0.56	-0.5
2,077,828	+		DZA65_RS09855	0.56	+0.2
2,077,828	+		DZA65_RS09855	0.56	+1.2
2,077,829	-		DZA65_RS09855	0.56	-0.1
2,077,874	-		DZA65_RS09855	0.59	-0.2
2,077,894	+		DZA65_RS09855	0.61	-0.2
2,077,894	+		DZA65_RS09855	0.61	-1.3
2,077,895	-		DZA65_RS09855	0.61	-0.8