Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09130

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,923,060	+				+1.2
1,923,060	+				-1.3
1,923,065	+				+0.2
1,923,070	-				-0.5
1,923,111	+				+0.2
1,923,111	+				+1.2
1,923,111	+				+0.1
1,923,112	-				+0.2
1,923,112	-				-1.8
1,923,112	-				+1.0
1,923,112	-				-0.6
1,923,112	-				+0.7
1,923,112	-				+0.8
1,923,112	-				-0.3
1,923,234	+		DZA65_RS09125	0.16	-1.8
1,923,234	+		DZA65_RS09125	0.16	-1.3
1,923,235	-		DZA65_RS09125	0.16	+0.3
1,923,235	-		DZA65_RS09125	0.16	-1.0
1,923,235	-		DZA65_RS09125	0.16	-0.3
1,923,235	-		DZA65_RS09125	0.16	-0.8
1,923,238	+		DZA65_RS09125	0.16	+0.5
1,923,238	+		DZA65_RS09125	0.16	-1.3
1,923,238	+		DZA65_RS09125	0.16	-0.5
1,923,239	-		DZA65_RS09125	0.16	+0.6
1,923,239	-		DZA65_RS09125	0.16	+0.2
1,923,242	-		DZA65_RS09125	0.17	+0.2
1,923,242	-		DZA65_RS09125	0.17	+1.0
1,923,242	-		DZA65_RS09125	0.17	+0.4
1,923,254	+		DZA65_RS09125	0.18	+0.2
1,923,254	+		DZA65_RS09125	0.18	+1.0
1,923,255	-		DZA65_RS09125	0.18	-1.3
1,923,255	-		DZA65_RS09125	0.18	+0.0
1,923,255	-		DZA65_RS09125	0.18	-0.3
1,923,255	-		DZA65_RS09125	0.18	-2.1
1,923,352	+		DZA65_RS09125	0.28	+2.2
1,923,352	+		DZA65_RS09125	0.28	-0.8
1,923,352	+		DZA65_RS09125	0.28	+0.6
1,923,352	+				+1.2
1,923,352	+		DZA65_RS09125	0.28	+1.5
1,923,352	+		DZA65_RS09125	0.28	-0.1
1,923,353	-		DZA65_RS09125	0.28	-0.5
1,923,365	-		DZA65_RS09125	0.30	+0.8
1,923,365	-		DZA65_RS09125	0.30	+0.0
1,923,365	-		DZA65_RS09125	0.30	-0.3
1,923,396	-		DZA65_RS09125	0.33	+0.7
1,923,396	-		DZA65_RS09125	0.33	-0.2
1,923,566	-		DZA65_RS09125	0.51	-0.6
1,923,611	-		DZA65_RS09125	0.55	+0.1
1,923,653	+		DZA65_RS09125	0.60	+0.2
1,923,676	+		DZA65_RS09125	0.62	+0.3
1,923,676	+		DZA65_RS09125	0.62	+1.3
1,923,677	-		DZA65_RS09125	0.62	+1.4
1,923,677	-		DZA65_RS09125	0.62	-0.8
1,923,752	+		DZA65_RS09125	0.70	+1.2
1,923,752	+		DZA65_RS09125	0.70	-0.1
1,923,753	-		DZA65_RS09125	0.70	-0.5
1,923,753	-		DZA65_RS09125	0.70	+1.4
1,923,794	-		DZA65_RS09125	0.75	+0.1
1,923,913	+		DZA65_RS09125	0.87	-0.8
1,923,965	+				-1.0
1,924,035	-				+0.0
1,924,039	+				+0.2
1,924,039	+				+0.7
1,924,039	+				-1.5
1,924,040	-				-1.2
1,924,152	+		DZA65_RS09130	0.14	+1.1
1,924,153	-		DZA65_RS09130	0.14	-0.8
1,924,157	+		DZA65_RS09130	0.15	-0.4
1,924,157	+		DZA65_RS09130	0.15	-0.3
1,924,157	+		DZA65_RS09130	0.15	+1.0
1,924,158	-		DZA65_RS09130	0.15	-1.3
1,924,158	-		DZA65_RS09130	0.15	+0.1
1,924,158	-		DZA65_RS09130	0.15	+0.4
1,924,158	-		DZA65_RS09130	0.15	+0.2
1,924,158	-		DZA65_RS09130	0.15	+0.2
1,924,158	-		DZA65_RS09130	0.15	+1.4
1,924,158	-		DZA65_RS09130	0.15	+0.1
1,924,158	-		DZA65_RS09130	0.15	+0.5
1,924,158	-		DZA65_RS09130	0.15	+0.6
1,924,194	+		DZA65_RS09130	0.20	-0.5
1,924,195	-		DZA65_RS09130	0.20	-0.3
1,924,195	-		DZA65_RS09130	0.20	-0.4
1,924,227	+		DZA65_RS09130	0.25	+0.5
1,924,227	+		DZA65_RS09130	0.25	+1.3
1,924,227	+		DZA65_RS09130	0.25	+1.2
1,924,228	-		DZA65_RS09130	0.25	+1.5
1,924,316	+		DZA65_RS09130	0.38	-0.2
1,924,316	+		DZA65_RS09130	0.38	-2.6
1,924,316	+		DZA65_RS09130	0.38	+1.2
1,924,316	+		DZA65_RS09130	0.38	-2.1
1,924,316	+		DZA65_RS09130	0.38	+0.2
1,924,316	+		DZA65_RS09130	0.38	+2.1
1,924,317	-		DZA65_RS09130	0.38	-0.1
1,924,317	-		DZA65_RS09130	0.38	-0.4
1,924,317	-		DZA65_RS09130	0.38	+0.5
1,924,317	-		DZA65_RS09130	0.38	-1.6
1,924,331	+		DZA65_RS09130	0.40	+0.4
1,924,332	-		DZA65_RS09130	0.40	-0.8
1,924,382	+		DZA65_RS09130	0.48	+0.2
1,924,382	+		DZA65_RS09130	0.48	+0.4
1,924,382	+				-0.3
1,924,382	+		DZA65_RS09130	0.48	+1.2
1,924,383	-		DZA65_RS09130	0.48	-0.4
1,924,383	-		DZA65_RS09130	0.48	-0.8
1,924,524	+		DZA65_RS09130	0.68	-1.2
1,924,525	-		DZA65_RS09130	0.68	-0.2
1,924,694	+				+0.2
1,924,694	+				+0.5
1,924,694	+				+0.6
1,924,694	+				+0.7
1,924,695	-				-1.1
1,924,711	-				-1.1
1,924,717	+				-1.0
1,924,737	+				-0.8
1,924,737	+				-1.2
1,924,737	+				-0.2
1,924,737	+				-0.0
1,924,737	+				-1.2
1,924,737	+				+0.2
1,924,737	+				-0.9
1,924,737	+				-1.3
1,924,737	+				-1.5
1,924,737	+				-0.2
1,924,737	+				+0.2
1,924,737	+				+0.4
1,924,738	-				-0.8
1,924,738	-				+0.2
1,924,738	-				-2.8
1,924,738	-				+1.8
1,924,738	-				+1.1
1,924,738	-				+0.2
1,924,759	+				+0.4
1,924,760	-				-0.9
1,924,761	+				-0.9
1,924,761	+				-0.6
1,924,762	-				-1.0
1,924,762	-				+0.7
1,924,762	-				-1.1
1,924,762	-				+0.0
1,924,775	-				-0.2
1,924,781	+				-0.1
1,924,782	-				+1.0
1,924,782	-				-0.4
1,924,782	-				-0.1
1,924,782	-				-0.4
1,924,782	-				-1.1
1,924,792	+				+0.1
1,924,792	+				-0.8
1,924,792	+				+1.5
1,924,848	+				-0.5
1,924,848	+				-0.3
1,924,848	+				-0.8
1,924,848	+				+0.2
1,924,848	+				-0.8
1,924,849	-				+0.0
1,924,849	-				+0.0
1,924,849	-				-0.7
1,924,849	-				+0.7
1,924,849	-				-0.3
1,924,849	-				-0.3
1,924,849	-				-0.9
1,924,849	-				+0.6
1,924,849	-				+0.2
1,924,849	-				-0.1
1,924,849	-				+0.9
1,924,849	-				-0.2
1,924,849	-				+0.1
1,924,849	-				+2.4
1,924,849	-				+0.2
1,924,880	+				-0.2
1,924,881	-				+0.2
1,924,963	+				-0.6
1,924,964	-				+1.6
1,924,972	+				+0.4
1,924,972	+				+0.0
1,924,972	+				-0.4
1,924,974	+				+1.2
1,924,974	+				-0.3
1,924,974	+				+1.3
1,924,974	+				-0.8
1,924,974	+				+0.8
1,924,974	+				+1.0
1,924,975	-				-0.3
1,924,975	-				+0.0
1,924,975	-				-2.0
1,924,975	-				+0.7
1,924,975	-				-0.2
1,924,975	-				+0.2
1,924,975	-				+0.6
1,924,975	-				-1.3
1,924,975	-				+0.6
1,924,975	-				-0.2
1,924,976	+				+0.1
1,924,976	+				-0.2
1,924,976	+				-1.3
1,924,976	+				-0.3
1,924,976	+				-0.3
1,924,977	-				+1.0
1,924,977	-				-0.8
1,924,977	-				-1.1
1,924,977	-				+0.5
1,924,995	+				+0.6
1,924,995	+				-0.5
1,924,996	-				-0.5
1,924,996	-				-1.1
1,924,996	-				-0.9
1,924,996	-				-0.9
1,924,996	-				-0.8
1,924,996	-				+0.4
1,925,001	+				-0.4
1,925,001	+				-1.1
1,925,001	+				-0.6
1,925,001	+				-0.0
1,925,002	-				-0.8
1,925,002	-				+0.5
1,925,018	+				+0.2
1,925,102	-				-2.3
1,925,102	-				-1.0
1,925,102	-				+0.6
1,925,102	-				-1.3
1,925,122	+				-0.1
1,925,154	+		DZA65_RS09140	0.14	-0.1
1,925,154	+		DZA65_RS09140	0.14	+0.2
1,925,154	+		DZA65_RS09140	0.14	+0.5
1,925,154	+		DZA65_RS09140	0.14	-0.1
1,925,155	-		DZA65_RS09140	0.14	-2.9
1,925,155	-		DZA65_RS09140	0.14	-2.8
1,925,155	-		DZA65_RS09140	0.14	-0.2
1,925,155	-		DZA65_RS09140	0.14	-0.3
1,925,155	-				+1.4
1,925,155	-				-1.3
1,925,158	+		DZA65_RS09140	0.14	-2.3
1,925,158	+		DZA65_RS09140	0.14	-2.8
1,925,159	-		DZA65_RS09140	0.14	+0.2
1,925,177	+				+0.2
1,925,182	+		DZA65_RS09140	0.17	-2.3
1,925,182	+		DZA65_RS09140	0.17	+0.1
1,925,182	+		DZA65_RS09140	0.17	+1.1
1,925,183	-		DZA65_RS09140	0.17	+0.4
1,925,183	-		DZA65_RS09140	0.17	-1.2
1,925,444	+		DZA65_RS09140	0.51	-1.1
1,925,473	+		DZA65_RS09140	0.55	+0.8
1,925,474	-		DZA65_RS09140	0.55	-0.8
1,925,474	-		DZA65_RS09140	0.55	-2.3
1,925,474	-		DZA65_RS09140	0.55	-3.5
1,925,474	-		DZA65_RS09140	0.55	+0.7
1,925,474	-				+1.2
1,925,537	-		DZA65_RS09140	0.63	+0.1
1,925,540	+		DZA65_RS09140	0.63	+2.2
1,925,558	+		DZA65_RS09140	0.66	+0.2
1,925,568	-		DZA65_RS09140	0.67	+2.1
1,925,568	-		DZA65_RS09140	0.67	-0.3