Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09045

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,903,661	+				-0.1
1,903,661	+				-1.4
1,903,661	+				+0.6
1,903,661	+				-2.4
1,903,661	+				+0.2
1,903,661	+				-0.2
1,903,661	+				-0.1
1,903,661	+				-0.1
1,903,661	+				-0.3
1,903,661	+				-0.8
1,903,662	-				-1.8
1,903,662	-				-1.6
1,903,662	-				+0.8
1,903,662	-				+0.0
1,903,662	-				-0.4
1,903,662	-				+0.7
1,903,662	-				-0.8
1,903,662	-				-0.3
1,903,662	-				-1.3
1,903,663	+				+0.2
1,903,664	-				+0.2
1,903,676	+		DZA65_RS09040	0.11	-0.8
1,903,677	-		DZA65_RS09040	0.11	-0.9
1,903,677	-		DZA65_RS09040	0.11	+1.6
1,903,724	+		DZA65_RS09040	0.18	-0.5
1,903,725	-		DZA65_RS09040	0.18	-0.1
1,903,725	-		DZA65_RS09040	0.18	-1.4
1,903,755	+				-0.8
1,903,755	+		DZA65_RS09040	0.22	+0.2
1,903,755	+		DZA65_RS09040	0.22	+0.6
1,903,756	-		DZA65_RS09040	0.22	-0.6
1,903,756	-		DZA65_RS09040	0.22	-0.8
1,903,866	+		DZA65_RS09040	0.38	-0.8
1,903,877	+		DZA65_RS09040	0.39	-0.3
1,903,955	-		DZA65_RS09040	0.50	-2.1
1,903,994	+		DZA65_RS09040	0.56	-0.6
1,903,995	-		DZA65_RS09040	0.56	-0.4
1,904,117	+		DZA65_RS09040	0.73	-1.9
1,904,117	+		DZA65_RS09040	0.73	+0.4
1,904,117	+		DZA65_RS09040	0.73	-0.4
1,904,117	+		DZA65_RS09040	0.73	-0.6
1,904,117	+		DZA65_RS09040	0.73	+0.1
1,904,117	+		DZA65_RS09040	0.73	-0.3
1,904,117	+		DZA65_RS09040	0.73	-1.8
1,904,117	+		DZA65_RS09040	0.73	-0.2
1,904,117	+		DZA65_RS09040	0.73	-0.4
1,904,117	+		DZA65_RS09040	0.73	-1.3
1,904,117	+		DZA65_RS09040	0.73	-1.6
1,904,117	+		DZA65_RS09040	0.73	+0.0
1,904,118	-		DZA65_RS09040	0.73	+0.2
1,904,118	-		DZA65_RS09040	0.73	-0.8
1,904,118	-		DZA65_RS09040	0.73	-2.1
1,904,153	+		DZA65_RS09040	0.78	-1.6
1,904,153	+		DZA65_RS09040	0.78	-1.1
1,904,154	-		DZA65_RS09040	0.78	-0.6
1,904,222	+		DZA65_RS09040	0.88	+0.6
1,904,223	-		DZA65_RS09040	0.88	+0.3
1,904,249	+				-1.4
1,904,250	-				-0.3
1,904,250	-				-0.4
1,904,391	+				+0.2
1,904,391	+				+0.7
1,904,391	+				-0.4
1,904,391	+				-0.1
1,904,391	+				+0.5
1,904,392	-				-0.6
1,904,751	+				+0.2
1,904,752	-				+1.1
1,904,752	-				+0.5
1,904,788	-		DZA65_RS09045	0.12	-0.6
1,904,826	-		DZA65_RS09045	0.15	-1.5
1,904,877	-		DZA65_RS09045	0.20	-0.9
1,904,940	-		DZA65_RS09045	0.25	+0.6
1,904,940	-		DZA65_RS09045	0.25	+0.9
1,904,940	-		DZA65_RS09045	0.25	-0.8
1,904,993	-		DZA65_RS09045	0.29	+0.7
1,904,998	+		DZA65_RS09045	0.30	+0.2
1,904,998	+		DZA65_RS09045	0.30	+0.5
1,904,998	+		DZA65_RS09045	0.30	+0.5
1,904,998	+		DZA65_RS09045	0.30	-0.0
1,904,998	+		DZA65_RS09045	0.30	-0.2
1,904,998	+		DZA65_RS09045	0.30	-0.3
1,904,999	-		DZA65_RS09045	0.30	-0.6
1,904,999	-		DZA65_RS09045	0.30	-1.8
1,904,999	-		DZA65_RS09045	0.30	-0.4
1,905,003	-		DZA65_RS09045	0.30	-0.6
1,905,003	-		DZA65_RS09045	0.30	+0.2
1,905,031	+		DZA65_RS09045	0.32	+0.1
1,905,032	-		DZA65_RS09045	0.32	+0.6
1,905,136	-		DZA65_RS09045	0.41	+1.8
1,905,157	+		DZA65_RS09045	0.43	-0.3
1,905,157	+		DZA65_RS09045	0.43	+1.2
1,905,157	+		DZA65_RS09045	0.43	-1.3
1,905,157	+		DZA65_RS09045	0.43	+0.4
1,905,157	+		DZA65_RS09045	0.43	+0.1
1,905,157	+		DZA65_RS09045	0.43	-0.1
1,905,158	-		DZA65_RS09045	0.43	-0.4
1,905,158	-		DZA65_RS09045	0.43	+1.0
1,905,158	-		DZA65_RS09045	0.43	-0.5
1,905,158	-		DZA65_RS09045	0.43	+0.2
1,905,208	+		DZA65_RS09045	0.47	-0.4
1,905,209	-		DZA65_RS09045	0.47	+0.9
1,905,367	+		DZA65_RS09045	0.60	-2.3
1,905,367	+		DZA65_RS09045	0.60	-0.1
1,905,367	+		DZA65_RS09045	0.60	+0.7
1,905,393	+		DZA65_RS09045	0.62	+0.8
1,905,393	+		DZA65_RS09045	0.62	+0.4
1,905,393	+		DZA65_RS09045	0.62	-0.4
1,905,394	-		DZA65_RS09045	0.62	-0.0
1,905,406	+		DZA65_RS09045	0.63	-0.1
1,905,407	-		DZA65_RS09045	0.63	+0.1
1,905,454	+		DZA65_RS09045	0.67	+0.2
1,905,455	-		DZA65_RS09045	0.67	-1.3
1,905,455	-		DZA65_RS09045	0.67	-0.8
1,905,479	+		DZA65_RS09045	0.69	-0.8
1,905,489	+		DZA65_RS09045	0.70	-0.3
1,905,489	+		DZA65_RS09045	0.70	-0.3
1,905,489	+		DZA65_RS09045	0.70	-0.2
1,905,490	-		DZA65_RS09045	0.70	-1.9
1,905,490	-		DZA65_RS09045	0.70	-2.6
1,905,498	+		DZA65_RS09045	0.71	-0.0
1,905,498	+		DZA65_RS09045	0.71	+0.9
1,905,498	+		DZA65_RS09045	0.71	-0.0
1,905,499	-		DZA65_RS09045	0.71	-1.0
1,905,499	-		DZA65_RS09045	0.71	-0.8
1,905,499	-		DZA65_RS09045	0.71	-0.5
1,905,499	-		DZA65_RS09045	0.71	+0.1
1,905,499	-		DZA65_RS09045	0.71	+1.2
1,905,566	-		DZA65_RS09045	0.77	-1.0
1,905,566	-		DZA65_RS09045	0.77	-1.3
1,905,787	+				+0.5
1,905,788	-				+0.4
1,905,788	-				+0.8
1,905,788	-				-1.2
1,905,945	+		DZA65_RS09050	0.13	+1.0
1,905,945	+		DZA65_RS09050	0.13	+0.7
1,905,945	+		DZA65_RS09050	0.13	+0.2
1,905,945	+		DZA65_RS09050	0.13	-0.6
1,905,945	+		DZA65_RS09050	0.13	-2.1
1,905,945	+		DZA65_RS09050	0.13	+1.3
1,905,945	+		DZA65_RS09050	0.13	+0.7
1,905,945	+		DZA65_RS09050	0.13	-0.3
1,905,945	+		DZA65_RS09050	0.13	+2.6
1,905,946	-		DZA65_RS09050	0.13	+0.2
1,905,946	-		DZA65_RS09050	0.13	-1.3
1,905,946	-		DZA65_RS09050	0.13	+0.0
1,905,946	-		DZA65_RS09050	0.13	+1.2
1,905,946	-		DZA65_RS09050	0.13	-0.9
1,905,946	-		DZA65_RS09050	0.13	+0.2
1,906,115	+		DZA65_RS09050	0.35	+1.2
1,906,139	+		DZA65_RS09050	0.38	+0.4
1,906,139	+		DZA65_RS09050	0.38	-1.3
1,906,139	+		DZA65_RS09050	0.38	-0.1
1,906,140	-		DZA65_RS09050	0.38	+0.2
1,906,203	+		DZA65_RS09050	0.46	-0.5
1,906,203	+		DZA65_RS09050	0.46	+0.4
1,906,203	+		DZA65_RS09050	0.46	-1.6
1,906,203	+		DZA65_RS09050	0.46	+0.5
1,906,204	-		DZA65_RS09050	0.47	+0.0
1,906,204	-		DZA65_RS09050	0.47	-0.1
1,906,229	+		DZA65_RS09050	0.50	-0.5
1,906,230	-		DZA65_RS09050	0.50	-1.3
1,906,287	+		DZA65_RS09050	0.57	+0.8
1,906,287	+		DZA65_RS09050	0.57	+0.1
1,906,342	-		DZA65_RS09050	0.64	+0.4
1,906,365	+		DZA65_RS09050	0.67	+0.9
1,906,399	-		DZA65_RS09050	0.72	-2.1
1,906,609	+				+0.2
1,906,609	+				+0.2
1,906,636	-				-1.1
1,906,650	+				+1.5
1,906,650	+				-0.7
1,906,650	+				+1.1
1,906,650	+				-1.3
1,906,651	-				+1.1
1,906,651	-				-1.1
1,906,727	-				-1.0
1,906,810	+		DZA65_RS09055	0.10	+0.1
1,906,810	+		DZA65_RS09055	0.10	-0.9
1,906,810	+		DZA65_RS09055	0.10	+0.6
1,906,810	+		DZA65_RS09055	0.10	+0.6
1,906,810	+		DZA65_RS09055	0.10	-1.8
1,906,810	+		DZA65_RS09055	0.10	+0.6
1,906,810	+		DZA65_RS09055	0.10	-0.8
1,906,810	+		DZA65_RS09055	0.10	-0.9
1,906,811	-		DZA65_RS09055	0.10	-0.3
1,906,811	-		DZA65_RS09055	0.10	+0.5
1,906,811	-		DZA65_RS09055	0.10	+0.7
1,906,811	-		DZA65_RS09055	0.10	+0.8
1,906,811	-		DZA65_RS09055	0.10	-0.5
1,906,811	-		DZA65_RS09055	0.10	-1.3
1,906,811	-		DZA65_RS09055	0.10	-0.3
1,906,811	-		DZA65_RS09055	0.10	-0.3
1,906,812	+		DZA65_RS09055	0.10	+0.3
1,906,812	+		DZA65_RS09055	0.10	+0.4
1,906,812	+		DZA65_RS09055	0.10	-0.4
1,906,812	+		DZA65_RS09055	0.10	-0.4
1,906,812	+		DZA65_RS09055	0.10	+0.0
1,906,812	+		DZA65_RS09055	0.10	+0.2
1,906,812	+		DZA65_RS09055	0.10	+1.1
1,906,812	+		DZA65_RS09055	0.10	+1.1
1,906,812	+		DZA65_RS09055	0.10	+1.1
1,906,813	-		DZA65_RS09055	0.10	+0.4
1,906,813	-		DZA65_RS09055	0.10	+0.7
1,906,813	-		DZA65_RS09055	0.10	+1.0
1,906,813	-		DZA65_RS09055	0.10	+0.6
1,906,813	-		DZA65_RS09055	0.10	+0.9
1,906,813	-		DZA65_RS09055	0.10	+0.1
1,906,813	-		DZA65_RS09055	0.10	-0.8
1,906,813	-		DZA65_RS09055	0.10	+0.6
1,906,813	-		DZA65_RS09055	0.10	+1.0
1,906,813	-		DZA65_RS09055	0.10	+2.4