Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08730

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,847,307	+		DZA65_RS08725	0.19	+0.2
1,847,307	+		DZA65_RS08725	0.19	-0.2
1,847,307	+		DZA65_RS08725	0.19	-0.4
1,847,307	+		DZA65_RS08725	0.19	+1.6
1,847,307	+		DZA65_RS08725	0.19	-0.4
1,847,307	+		DZA65_RS08725	0.19	+0.8
1,847,308	-		DZA65_RS08725	0.19	+1.0
1,847,308	-		DZA65_RS08725	0.19	-1.5
1,847,308	-		DZA65_RS08725	0.19	-0.2
1,847,308	-		DZA65_RS08725	0.19	+1.4
1,847,311	+		DZA65_RS08725	0.20	+0.7
1,847,311	+				-1.8
1,847,311	+		DZA65_RS08725	0.20	+0.6
1,847,312	-		DZA65_RS08725	0.20	-0.9
1,847,312	-		DZA65_RS08725	0.20	-0.4
1,847,418	+		DZA65_RS08725	0.29	-0.0
1,847,418	+		DZA65_RS08725	0.29	-1.7
1,847,419	-		DZA65_RS08725	0.29	+0.6
1,847,419	-		DZA65_RS08725	0.29	-0.2
1,847,419	-		DZA65_RS08725	0.29	+0.5
1,847,419	-		DZA65_RS08725	0.29	-0.8
1,847,420	+		DZA65_RS08725	0.29	+0.3
1,847,420	+		DZA65_RS08725	0.29	-0.4
1,847,421	-		DZA65_RS08725	0.29	-0.8
1,847,421	-		DZA65_RS08725	0.29	+0.5
1,847,432	+		DZA65_RS08725	0.30	-0.3
1,847,436	+		DZA65_RS08725	0.30	+0.5
1,847,436	+		DZA65_RS08725	0.30	+1.5
1,847,437	-		DZA65_RS08725	0.30	-1.0
1,847,437	-		DZA65_RS08725	0.30	-0.4
1,847,437	-		DZA65_RS08725	0.30	-1.5
1,847,437	-		DZA65_RS08725	0.30	-0.2
1,847,490	+		DZA65_RS08725	0.35	+0.6
1,847,490	+		DZA65_RS08725	0.35	-1.4
1,847,490	+		DZA65_RS08725	0.35	+0.2
1,847,490	+		DZA65_RS08725	0.35	-0.4
1,847,490	+		DZA65_RS08725	0.35	+0.0
1,847,491	-		DZA65_RS08725	0.35	-0.6
1,847,492	+				+0.2
1,847,493	-		DZA65_RS08725	0.35	-1.4
1,847,493	-		DZA65_RS08725	0.35	+1.1
1,847,630	+		DZA65_RS08725	0.47	+0.3
1,847,633	+		DZA65_RS08725	0.47	+0.2
1,847,633	+		DZA65_RS08725	0.47	-1.0
1,847,634	-		DZA65_RS08725	0.47	+0.5
1,847,634	-		DZA65_RS08725	0.47	+0.5
1,847,634	-		DZA65_RS08725	0.47	-0.5
1,847,634	-		DZA65_RS08725	0.47	+0.2
1,847,687	+		DZA65_RS08725	0.52	-0.4
1,847,687	+		DZA65_RS08725	0.52	+0.0
1,847,688	-		DZA65_RS08725	0.52	-0.8
1,847,688	-		DZA65_RS08725	0.52	-0.2
1,847,691	+		DZA65_RS08725	0.52	+1.1
1,847,692	-		DZA65_RS08725	0.52	-2.1
1,847,692	-		DZA65_RS08725	0.52	+0.0
1,847,692	-		DZA65_RS08725	0.52	+0.9
1,847,692	-		DZA65_RS08725	0.52	-0.6
1,847,736	+		DZA65_RS08725	0.56	+0.8
1,847,736	+		DZA65_RS08725	0.56	-2.6
1,847,736	+		DZA65_RS08725	0.56	-0.4
1,847,798	+		DZA65_RS08725	0.61	-0.1
1,847,898	+		DZA65_RS08725	0.69	+0.2
1,847,898	+		DZA65_RS08725	0.69	-1.8
1,847,898	+		DZA65_RS08725	0.69	+0.6
1,847,898	+		DZA65_RS08725	0.69	+0.5
1,847,898	+		DZA65_RS08725	0.69	+0.0
1,847,898	+		DZA65_RS08725	0.69	-0.8
1,847,898	+		DZA65_RS08725	0.69	+0.6
1,847,898	+		DZA65_RS08725	0.69	-1.6
1,847,898	+		DZA65_RS08725	0.69	+0.2
1,847,898	+		DZA65_RS08725	0.69	+1.5
1,847,898	+		DZA65_RS08725	0.69	+0.3
1,847,898	+		DZA65_RS08725	0.69	+0.4
1,847,898	+		DZA65_RS08725	0.69	-0.8
1,847,899	-		DZA65_RS08725	0.70	+1.0
1,847,899	-		DZA65_RS08725	0.70	+0.1
1,847,899	-				+2.0
1,847,899	-		DZA65_RS08725	0.70	+1.8
1,847,899	-		DZA65_RS08725	0.70	-2.6
1,847,899	-		DZA65_RS08725	0.70	+0.7
1,847,899	-		DZA65_RS08725	0.70	+0.6
1,847,899	-		DZA65_RS08725	0.70	-0.6
1,847,899	-				+0.2
1,847,899	-		DZA65_RS08725	0.70	+0.1
1,847,899	-		DZA65_RS08725	0.70	+0.2
1,847,899	-		DZA65_RS08725	0.70	-0.4
1,847,899	-		DZA65_RS08725	0.70	+0.2
1,847,899	-		DZA65_RS08725	0.70	+0.1
1,847,914	+		DZA65_RS08725	0.71	-0.2
1,847,915	-		DZA65_RS08725	0.71	-0.3
1,847,915	-		DZA65_RS08725	0.71	+0.8
1,847,915	-		DZA65_RS08725	0.71	-0.8
1,847,915	-		DZA65_RS08725	0.71	+0.7
1,847,915	-		DZA65_RS08725	0.71	-0.8
1,847,915	-		DZA65_RS08725	0.71	-0.5
1,847,917	-		DZA65_RS08725	0.71	-1.8
1,847,929	+		DZA65_RS08725	0.72	+0.1
1,847,929	+		DZA65_RS08725	0.72	+1.1
1,847,929	+		DZA65_RS08725	0.72	-0.1
1,847,929	+		DZA65_RS08725	0.72	-0.5
1,848,002	+		DZA65_RS08725	0.78	+1.1
1,848,002	+		DZA65_RS08725	0.78	+0.5
1,848,003	-		DZA65_RS08725	0.78	-0.3
1,848,110	+		DZA65_RS08725	0.87	+0.2
1,848,111	-				-1.8
1,848,111	-		DZA65_RS08725	0.88	+0.6
1,848,111	-		DZA65_RS08725	0.88	-1.0
1,848,111	-		DZA65_RS08725	0.88	+0.6
1,848,172	-				-1.4
1,848,172	-				+0.8
1,848,198	-				-0.6
1,848,256	-				-0.4
1,848,277	-				-0.1
1,848,288	+				-0.4
1,848,289	-				-2.4
1,848,289	-				+0.8
1,848,289	-				+1.0
1,848,289	-				+0.2
1,848,432	+		DZA65_RS08730	0.11	+0.5
1,848,433	-		DZA65_RS08730	0.11	+1.8
1,848,433	-		DZA65_RS08730	0.11	+1.0
1,848,433	-		DZA65_RS08730	0.11	+0.1
1,848,433	-		DZA65_RS08730	0.11	-0.4
1,848,433	-		DZA65_RS08730	0.11	-1.0
1,848,433	-		DZA65_RS08730	0.11	+0.2
1,848,599	+		DZA65_RS08730	0.22	+0.1
1,848,600	-		DZA65_RS08730	0.22	-0.4
1,848,626	-		DZA65_RS08730	0.23	-0.4
1,848,760	+		DZA65_RS08730	0.32	+0.2
1,848,760	+		DZA65_RS08730	0.32	-2.6
1,848,760	+		DZA65_RS08730	0.32	-1.4
1,848,760	+		DZA65_RS08730	0.32	-2.1
1,848,760	+		DZA65_RS08730	0.32	-1.4
1,848,760	+		DZA65_RS08730	0.32	+1.0
1,848,761	-		DZA65_RS08730	0.32	+0.1
1,848,761	-		DZA65_RS08730	0.32	+0.1
1,848,761	-		DZA65_RS08730	0.32	+1.6
1,848,761	-		DZA65_RS08730	0.32	+0.2
1,848,761	-		DZA65_RS08730	0.32	+0.5
1,848,761	-		DZA65_RS08730	0.32	-0.5
1,848,761	-		DZA65_RS08730	0.32	+1.6
1,848,781	+		DZA65_RS08730	0.34	+0.8
1,848,782	-		DZA65_RS08730	0.34	-1.1
1,848,874	+		DZA65_RS08730	0.40	-0.8
1,848,874	+		DZA65_RS08730	0.40	+0.4
1,848,874	+		DZA65_RS08730	0.40	+0.1
1,848,874	+		DZA65_RS08730	0.40	+0.5
1,848,875	-		DZA65_RS08730	0.40	+0.7
1,848,875	-		DZA65_RS08730	0.40	+1.5
1,848,875	-		DZA65_RS08730	0.40	-0.3
1,848,875	-		DZA65_RS08730	0.40	-0.1
1,849,014	+		DZA65_RS08730	0.49	+1.5
1,849,014	+		DZA65_RS08730	0.49	-0.4
1,849,168	+		DZA65_RS08730	0.59	+1.8
1,849,214	+		DZA65_RS08730	0.62	+0.5
1,849,227	+		DZA65_RS08730	0.63	+1.0
1,849,266	-		DZA65_RS08730	0.65	-0.8
1,849,350	+		DZA65_RS08730	0.71	+0.8
1,849,364	+		DZA65_RS08730	0.72	+1.2
1,849,364	+		DZA65_RS08730	0.72	-0.6
1,849,364	+		DZA65_RS08730	0.72	+0.4
1,849,365	-				+1.2
1,849,365	-		DZA65_RS08730	0.72	-1.0
1,849,365	-		DZA65_RS08730	0.72	-1.4
1,849,365	-		DZA65_RS08730	0.72	+0.6
1,849,365	-		DZA65_RS08730	0.72	-0.1
1,849,543	+		DZA65_RS08730	0.83	+0.0
1,849,543	+		DZA65_RS08730	0.83	+0.2
1,849,543	+		DZA65_RS08730	0.83	-0.3
1,849,544	-		DZA65_RS08730	0.84	+0.2
1,849,579	+		DZA65_RS08730	0.86	-0.4
1,849,579	+		DZA65_RS08730	0.86	+0.4
1,849,579	+		DZA65_RS08730	0.86	-0.2
1,849,579	+		DZA65_RS08730	0.86	+0.0
1,849,579	+		DZA65_RS08730	0.86	+1.6
1,849,580	-		DZA65_RS08730	0.86	+0.5
1,849,580	-		DZA65_RS08730	0.86	+0.5
1,849,600	+		DZA65_RS08730	0.87	+0.4
1,849,600	+		DZA65_RS08730	0.87	+2.5
1,849,693	+				+0.2
1,849,694	-				+0.7
1,849,731	-				+0.5
1,849,731	-				-0.9
1,849,792	+				+1.6
1,849,792	+				+1.6
1,849,793	-				+1.2
1,849,813	+				+0.7
1,849,813	+				+0.2
1,849,814	-				-0.4
1,849,814	-				+0.7
1,849,814	-				+0.4
1,849,851	+				+0.7
1,849,851	+				-1.0
1,849,852	-				+0.5
1,849,894	-				-0.3
1,849,909	+				-0.4
1,849,909	+				+0.1
1,849,910	-				-0.0
1,849,921	+				+0.2
1,849,921	+				-0.4
1,849,922	-				-0.1
1,850,060	+		DZA65_RS08735	0.19	+1.0
1,850,060	+		DZA65_RS08735	0.19	+0.0
1,850,060	+		DZA65_RS08735	0.19	-1.2
1,850,060	+		DZA65_RS08735	0.19	-0.4
1,850,061	-		DZA65_RS08735	0.19	-1.0
1,850,061	-		DZA65_RS08735	0.19	-0.1
1,850,061	-		DZA65_RS08735	0.19	-1.4
1,850,061	-		DZA65_RS08735	0.19	+0.5
1,850,063	-		DZA65_RS08735	0.20	-1.4
1,850,131	-		DZA65_RS08735	0.27	-3.1
1,850,137	-		DZA65_RS08735	0.28	+0.7
1,850,137	-		DZA65_RS08735	0.28	+0.9
1,850,137	-		DZA65_RS08735	0.28	+0.6
1,850,168	-		DZA65_RS08735	0.31	+0.1
1,850,223	+		DZA65_RS08735	0.37	-1.4
1,850,223	+		DZA65_RS08735	0.37	-0.5
1,850,223	+		DZA65_RS08735	0.37	+1.3
1,850,320	+		DZA65_RS08735	0.48	-0.8
1,850,320	+		DZA65_RS08735	0.48	-2.4
1,850,320	+		DZA65_RS08735	0.48	-0.4
1,850,320	+		DZA65_RS08735	0.48	+0.4
1,850,320	+		DZA65_RS08735	0.48	-1.1
1,850,320	+		DZA65_RS08735	0.48	-2.9
1,850,320	+		DZA65_RS08735	0.48	+0.1
1,850,320	+		DZA65_RS08735	0.48	+1.6
1,850,320	+		DZA65_RS08735	0.48	-1.4
1,850,320	+		DZA65_RS08735	0.48	-0.1
1,850,321	-		DZA65_RS08735	0.48	-0.4
1,850,321	-		DZA65_RS08735	0.48	-1.8
1,850,321	-		DZA65_RS08735	0.48	+0.1
1,850,321	-		DZA65_RS08735	0.48	+1.0
1,850,321	-		DZA65_RS08735	0.48	+0.2
1,850,321	-		DZA65_RS08735	0.48	+0.5
1,850,348	-		DZA65_RS08735	0.51	-0.1
1,850,359	+		DZA65_RS08735	0.53	+0.6
1,850,389	-		DZA65_RS08735	0.56	-0.6
1,850,417	+		DZA65_RS08735	0.59	-1.0
1,850,417	+		DZA65_RS08735	0.59	-0.7
1,850,417	+		DZA65_RS08735	0.59	-0.8
1,850,418	-		DZA65_RS08735	0.59	+0.2
1,850,420	-		DZA65_RS08735	0.59	+0.6
1,850,420	-		DZA65_RS08735	0.59	+0.8
1,850,437	+		DZA65_RS08735	0.61	+1.0
1,850,438	-		DZA65_RS08735	0.61	+0.1
1,850,441	+		DZA65_RS08735	0.62	-0.2
1,850,441	+		DZA65_RS08735	0.62	+0.2
1,850,442	-		DZA65_RS08735	0.62	-1.2
1,850,458	+		DZA65_RS08735	0.64	+0.2
1,850,502	-		DZA65_RS08735	0.68	-0.4
1,850,506	+		DZA65_RS08735	0.69	-0.9
1,850,506	+		DZA65_RS08735	0.69	+0.6
1,850,507	-		DZA65_RS08735	0.69	-0.3
1,850,507	-		DZA65_RS08735	0.69	-0.1
1,850,507	-		DZA65_RS08735	0.69	+0.6
1,850,507	-		DZA65_RS08735	0.69	-0.0
1,850,525	+		DZA65_RS08735	0.71	+0.0
1,850,525	+		DZA65_RS08735	0.71	-2.4
1,850,526	-		DZA65_RS08735	0.71	+0.5
1,850,530	+		DZA65_RS08735	0.72	-1.8
1,850,545	+		DZA65_RS08735	0.73	-0.4
1,850,583	-		DZA65_RS08735	0.77	-1.4
1,850,593	+		DZA65_RS08735	0.79	+0.1
1,850,594	-		DZA65_RS08735	0.79	-0.5
1,850,618	+		DZA65_RS08735	0.81	-1.0
1,850,619	-		DZA65_RS08735	0.81	+1.8
1,850,650	+		DZA65_RS08735	0.85	-0.4
1,850,650	+		DZA65_RS08735	0.85	+0.7
1,850,651	-		DZA65_RS08735	0.85	-0.2
1,850,651	-		DZA65_RS08735	0.85	-0.4
1,850,669	+				+0.2
1,850,669	+		DZA65_RS08735	0.87	+1.0
1,850,670	-		DZA65_RS08735	0.87	-1.1
1,850,670	-		DZA65_RS08735	0.87	+0.8
1,850,733	+				+0.5
1,850,733	+				-0.8
1,850,733	+				+0.1
1,850,733	+				-1.6
1,850,734	-				-0.2
1,850,737	+				-0.8
1,850,762	+				-1.0
1,850,762	+				-1.4
1,850,762	+				-0.5
1,850,762	+				-0.8
1,850,762	+				+0.6
1,850,762	+				+0.1
1,850,762	+				+0.6
1,850,762	+				-0.4
1,850,762	+				-0.5
1,850,762	+				+0.5
1,850,762	+				+0.2
1,850,762	+				+0.2
1,850,763	-				-0.2
1,850,763	-				+0.5
1,850,763	-				-0.2
1,850,763	-				-1.0
1,850,763	-				+0.4
1,850,763	-				+0.0
1,850,763	-				-0.2
1,850,763	-				-1.4
1,850,763	-				-1.0
1,850,763	-				-0.2
1,850,764	+				+2.6