Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08300

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,748,939	+		DZA65_RS08295	0.71	+0.1
1,748,940	-		DZA65_RS08295	0.71	+0.0
1,748,942	+		DZA65_RS08295	0.71	+1.2
1,748,942	+		DZA65_RS08295	0.71	+0.2
1,748,943	-		DZA65_RS08295	0.71	-0.8
1,748,943	-				+1.8
1,748,943	-		DZA65_RS08295	0.71	+0.4
1,748,989	-		DZA65_RS08295	0.72	+0.6
1,749,006	+		DZA65_RS08295	0.73	+0.6
1,749,007	-		DZA65_RS08295	0.73	-1.0
1,749,007	-		DZA65_RS08295	0.73	-0.2
1,749,007	-		DZA65_RS08295	0.73	+0.4
1,749,074	+		DZA65_RS08295	0.76	+0.7
1,749,075	-		DZA65_RS08295	0.76	-0.3
1,749,159	+		DZA65_RS08295	0.79	-1.9
1,749,166	+		DZA65_RS08295	0.79	+0.8
1,749,166	+		DZA65_RS08295	0.79	+0.5
1,749,166	+		DZA65_RS08295	0.79	-0.6
1,749,167	-		DZA65_RS08295	0.79	-0.2
1,749,167	-		DZA65_RS08295	0.79	+0.3
1,749,167	-		DZA65_RS08295	0.79	-0.0
1,749,167	-		DZA65_RS08295	0.79	+0.1
1,749,167	-		DZA65_RS08295	0.79	+1.6
1,749,167	-		DZA65_RS08295	0.79	-0.1
1,749,167	-		DZA65_RS08295	0.79	+0.2
1,749,241	-		DZA65_RS08295	0.82	+1.5
1,749,241	-		DZA65_RS08295	0.82	-1.0
1,749,271	+		DZA65_RS08295	0.83	+0.8
1,749,271	+		DZA65_RS08295	0.83	-0.5
1,749,271	+		DZA65_RS08295	0.83	-1.3
1,749,272	-		DZA65_RS08295	0.83	-1.6
1,749,272	-		DZA65_RS08295	0.83	-0.1
1,749,368	+		DZA65_RS08295	0.86	+0.2
1,749,368	+		DZA65_RS08295	0.86	-3.2
1,749,368	+		DZA65_RS08295	0.86	+0.5
1,749,368	+		DZA65_RS08295	0.86	+1.4
1,749,369	-		DZA65_RS08295	0.86	-0.1
1,749,369	-		DZA65_RS08295	0.86	-0.6
1,749,369	-				-1.3
1,749,369	-		DZA65_RS08295	0.86	+0.8
1,749,369	-		DZA65_RS08295	0.86	-0.2
1,749,369	-		DZA65_RS08295	0.86	-0.0
1,749,380	+		DZA65_RS08295	0.87	-0.9
1,749,381	-		DZA65_RS08295	0.87	+0.2
1,749,381	-		DZA65_RS08295	0.87	-0.6
1,749,381	-		DZA65_RS08295	0.87	-0.5
1,749,381	-		DZA65_RS08295	0.87	-0.6
1,749,381	-		DZA65_RS08295	0.87	-0.3
1,749,615	+				+0.5
1,749,615	+				-0.8
1,749,616	-				-0.1
1,749,616	-				+2.4
1,749,616	-				+0.2
1,749,616	-				-0.8
1,749,616	-				+1.1
1,749,616	-				-0.9
1,749,707	-				-1.0
1,749,771	+				+0.2
1,749,771	+				-0.5
1,749,772	-				-1.2
1,749,772	-				+0.1
1,749,772	-				+0.1
1,749,834	+				-1.0
1,749,834	+				+0.3
1,749,835	-				-1.9
1,749,835	-				-0.8
1,749,836	+				-0.0
1,749,837	-				+0.7
1,750,070	+		DZA65_RS08300	0.36	-0.8
1,750,074	+		DZA65_RS08300	0.36	-2.3
1,750,074	+		DZA65_RS08300	0.36	+0.7
1,750,074	+		DZA65_RS08300	0.36	+0.7
1,750,074	+		DZA65_RS08300	0.36	+1.1
1,750,075	-		DZA65_RS08300	0.37	+0.2
1,750,075	-		DZA65_RS08300	0.37	+0.2
1,750,075	-		DZA65_RS08300	0.37	+1.7
1,750,075	-		DZA65_RS08300	0.37	-0.0
1,750,086	+		DZA65_RS08300	0.38	-0.5
1,750,087	-		DZA65_RS08300	0.38	-0.2
1,750,087	-		DZA65_RS08300	0.38	-0.8
1,750,087	-		DZA65_RS08300	0.38	+0.0
1,750,087	-		DZA65_RS08300	0.38	+1.5
1,750,087	-		DZA65_RS08300	0.38	+0.7
1,750,139	+		DZA65_RS08300	0.46	+0.4
1,750,139	+		DZA65_RS08300	0.46	-0.0
1,750,139	+		DZA65_RS08300	0.46	+0.5
1,750,140	-		DZA65_RS08300	0.46	+0.7
1,750,140	-		DZA65_RS08300	0.46	-0.2
1,750,209	+		DZA65_RS08300	0.56	+1.2
1,750,227	+		DZA65_RS08300	0.58	+0.6
1,750,227	+		DZA65_RS08300	0.58	+1.0
1,750,227	+		DZA65_RS08300	0.58	-0.2
1,750,227	+		DZA65_RS08300	0.58	+2.4
1,750,227	+		DZA65_RS08300	0.58	+0.2
1,750,228	-		DZA65_RS08300	0.59	+1.4
1,750,228	-		DZA65_RS08300	0.59	+0.1
1,750,228	-		DZA65_RS08300	0.59	+1.4
1,750,228	-		DZA65_RS08300	0.59	-1.3
1,750,230	+		DZA65_RS08300	0.59	-0.8
1,750,230	+		DZA65_RS08300	0.59	-0.1
1,750,230	+		DZA65_RS08300	0.59	+0.2
1,750,231	-		DZA65_RS08300	0.59	-0.9
1,750,231	-		DZA65_RS08300	0.59	+0.6
1,750,231	-		DZA65_RS08300	0.59	-0.8
1,750,231	-		DZA65_RS08300	0.59	-0.5
1,750,231	-		DZA65_RS08300	0.59	-1.5
1,750,231	-		DZA65_RS08300	0.59	+0.2
1,750,231	-		DZA65_RS08300	0.59	-2.6
1,750,231	-		DZA65_RS08300	0.59	+1.5
1,750,278	+		DZA65_RS08300	0.66	-0.4
1,750,278	+		DZA65_RS08300	0.66	-0.3
1,750,278	+		DZA65_RS08300	0.66	+0.1
1,750,278	+		DZA65_RS08300	0.66	-0.1
1,750,279	-		DZA65_RS08300	0.66	-0.3
1,750,279	-		DZA65_RS08300	0.66	+0.9
1,750,279	-		DZA65_RS08300	0.66	+2.2
1,750,413	+		DZA65_RS08300	0.85	+0.2
1,750,413	+		DZA65_RS08300	0.85	+0.2
1,750,413	+		DZA65_RS08300	0.85	+0.2
1,750,413	+		DZA65_RS08300	0.85	+0.2
1,750,414	-		DZA65_RS08300	0.85	-0.3
1,750,414	-		DZA65_RS08300	0.85	+0.2
1,750,414	-		DZA65_RS08300	0.85	+0.1
1,750,414	-		DZA65_RS08300	0.85	+0.2
1,750,452	+				+0.0
1,750,515	+				-0.3
1,750,515	+				+0.2
1,750,516	-				+0.8
1,750,516	-				-1.0
1,750,634	+		DZA65_RS08305	0.14	-0.2
1,750,634	+				-1.1
1,750,635	-		DZA65_RS08305	0.14	-2.1
1,750,871	+		DZA65_RS08305	0.39	-0.1
1,750,872	-		DZA65_RS08305	0.39	-0.9
1,750,879	+		DZA65_RS08305	0.40	-0.2
1,750,879	+		DZA65_RS08305	0.40	-1.5
1,750,880	-		DZA65_RS08305	0.40	+1.5
1,750,880	-		DZA65_RS08305	0.40	+1.8
1,750,880	-		DZA65_RS08305	0.40	+0.2
1,750,880	-		DZA65_RS08305	0.40	-0.2
1,750,880	-		DZA65_RS08305	0.40	+1.2
1,750,880	-		DZA65_RS08305	0.40	+0.3
1,750,973	+		DZA65_RS08305	0.50	+1.2
1,750,974	-		DZA65_RS08305	0.50	-1.3
1,751,013	+		DZA65_RS08305	0.54	+0.2
1,751,013	+		DZA65_RS08305	0.54	-0.2
1,751,020	-		DZA65_RS08305	0.55	-0.1
1,751,020	-		DZA65_RS08305	0.55	-0.4
1,751,094	-		DZA65_RS08305	0.63	+0.2
1,751,412	+				-0.3
1,751,412	+				-0.2
1,751,412	+				-0.4
1,751,412	+				-1.0
1,751,413	-				+1.8
1,751,413	-				+0.6
1,751,422	+				+0.2
1,751,422	+				-0.6
1,751,423	-				+0.2
1,751,423	-				-0.2
1,751,423	-				-1.6
1,751,457	+				-0.5
1,751,457	+				-0.8
1,751,492	+				-0.9