Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08290

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,743,762	-		DZA65_RS08285	0.22	+1.1
1,743,762	-		DZA65_RS08285	0.22	+1.1
1,743,785	+		DZA65_RS08285	0.25	+1.3
1,743,811	+		DZA65_RS08285	0.27	+0.4
1,743,811	+		DZA65_RS08285	0.27	+0.6
1,743,811	+		DZA65_RS08285	0.27	+1.4
1,743,811	+		DZA65_RS08285	0.27	-0.3
1,743,812	-		DZA65_RS08285	0.27	+0.9
1,743,812	-		DZA65_RS08285	0.27	+0.9
1,743,812	-		DZA65_RS08285	0.27	-1.3
1,743,812	-		DZA65_RS08285	0.27	-0.5
1,743,812	-		DZA65_RS08285	0.27	-1.5
1,743,822	+		DZA65_RS08285	0.28	+1.2
1,743,822	+		DZA65_RS08285	0.28	-0.8
1,743,822	+		DZA65_RS08285	0.28	-0.5
1,743,822	+		DZA65_RS08285	0.28	+1.1
1,743,822	+		DZA65_RS08285	0.28	-1.3
1,743,822	+		DZA65_RS08285	0.28	-1.8
1,743,823	-		DZA65_RS08285	0.28	-1.0
1,743,843	-		DZA65_RS08285	0.30	-3.1
1,743,909	+		DZA65_RS08285	0.37	+1.2
1,743,909	+		DZA65_RS08285	0.37	-0.1
1,743,955	+		DZA65_RS08285	0.41	+0.0
1,743,955	+		DZA65_RS08285	0.41	-1.9
1,743,956	-		DZA65_RS08285	0.42	-0.1
1,743,956	-		DZA65_RS08285	0.42	+0.2
1,743,956	-		DZA65_RS08285	0.42	+3.2
1,743,956	-		DZA65_RS08285	0.42	+0.1
1,744,266	-		DZA65_RS08285	0.72	-0.4
1,744,268	+		DZA65_RS08285	0.73	-1.4
1,744,269	-		DZA65_RS08285	0.73	-0.6
1,744,269	-		DZA65_RS08285	0.73	-0.3
1,744,269	-		DZA65_RS08285	0.73	-0.5
1,744,276	+		DZA65_RS08285	0.73	-0.7
1,744,326	+		DZA65_RS08285	0.78	+0.5
1,744,326	+		DZA65_RS08285	0.78	-1.8
1,744,326	+		DZA65_RS08285	0.78	-0.3
1,744,326	+				-0.8
1,744,326	+		DZA65_RS08285	0.78	-0.5
1,744,326	+		DZA65_RS08285	0.78	-0.6
1,744,326	+		DZA65_RS08285	0.78	-0.5
1,744,326	+		DZA65_RS08285	0.78	-0.3
1,744,326	+		DZA65_RS08285	0.78	-2.9
1,744,326	+		DZA65_RS08285	0.78	+0.7
1,744,327	-		DZA65_RS08285	0.78	-0.6
1,744,327	-		DZA65_RS08285	0.78	-0.3
1,744,327	-		DZA65_RS08285	0.78	-0.8
1,744,327	-		DZA65_RS08285	0.78	-0.0
1,744,327	-		DZA65_RS08285	0.78	+0.2
1,744,327	-		DZA65_RS08285	0.78	-0.0
1,744,328	+		DZA65_RS08285	0.78	+0.1
1,744,402	+		DZA65_RS08285	0.86	-1.6
1,744,411	+		DZA65_RS08285	0.87	+0.2
1,744,411	+		DZA65_RS08285	0.87	-1.6
1,744,411	+		DZA65_RS08285	0.87	+0.5
1,744,411	+		DZA65_RS08285	0.87	-0.3
1,744,412	-		DZA65_RS08285	0.87	-0.3
1,744,474	-				-1.1
1,744,620	+				-0.6
1,745,089	+		DZA65_RS08290	0.19	-0.0
1,745,089	+		DZA65_RS08290	0.19	-0.2
1,745,090	-		DZA65_RS08290	0.19	-0.2
1,745,090	-		DZA65_RS08290	0.19	+0.8
1,745,131	-		DZA65_RS08290	0.21	-0.9
1,745,173	+		DZA65_RS08290	0.23	+1.2
1,745,174	-		DZA65_RS08290	0.23	+0.5
1,745,273	-		DZA65_RS08290	0.27	+0.6
1,745,273	-		DZA65_RS08290	0.27	+0.6
1,745,359	+		DZA65_RS08290	0.31	-0.4
1,745,365	+		DZA65_RS08290	0.31	+0.7
1,745,366	-		DZA65_RS08290	0.31	+0.0
1,745,366	-		DZA65_RS08290	0.31	+0.0
1,745,431	+		DZA65_RS08290	0.34	-0.8
1,745,460	+		DZA65_RS08290	0.35	+0.5
1,745,460	+		DZA65_RS08290	0.35	+0.1
1,745,474	-		DZA65_RS08290	0.36	-1.0
1,745,474	-		DZA65_RS08290	0.36	-1.0
1,745,474	-		DZA65_RS08290	0.36	+0.9
1,745,674	+		DZA65_RS08290	0.44	+0.7
1,745,674	+		DZA65_RS08290	0.44	-0.9
1,745,675	-		DZA65_RS08290	0.44	+0.6
1,745,675	-		DZA65_RS08290	0.44	+1.1
1,745,675	-		DZA65_RS08290	0.44	+0.4
1,745,675	-		DZA65_RS08290	0.44	-1.5
1,745,676	+		DZA65_RS08290	0.45	+0.5
1,745,676	+		DZA65_RS08290	0.45	+1.2
1,745,704	+		DZA65_RS08290	0.46	-1.2
1,745,705	-		DZA65_RS08290	0.46	+0.4
1,745,753	-		DZA65_RS08290	0.48	-0.4
1,745,836	+		DZA65_RS08290	0.51	+0.2
1,745,855	-		DZA65_RS08290	0.52	-1.0
1,745,893	+		DZA65_RS08290	0.54	+1.4
1,745,893	+				+1.2
1,745,894	-		DZA65_RS08290	0.54	-0.9
1,745,894	-		DZA65_RS08290	0.54	-0.6
1,745,954	+		DZA65_RS08290	0.57	-2.8
1,745,954	+		DZA65_RS08290	0.57	+0.2
1,745,986	+		DZA65_RS08290	0.58	+0.2
1,745,986	+				-1.8
1,745,986	+		DZA65_RS08290	0.58	-0.6
1,745,986	+		DZA65_RS08290	0.58	+0.9
1,745,987	-		DZA65_RS08290	0.58	+0.5
1,745,987	-		DZA65_RS08290	0.58	+0.1
1,746,058	+		DZA65_RS08290	0.61	+0.2
1,746,058	+		DZA65_RS08290	0.61	+0.1
1,746,058	+		DZA65_RS08290	0.61	-0.1
1,746,058	+		DZA65_RS08290	0.61	-0.8
1,746,058	+		DZA65_RS08290	0.61	+0.2
1,746,059	-		DZA65_RS08290	0.61	-0.3
1,746,059	-		DZA65_RS08290	0.61	-0.2
1,746,059	-		DZA65_RS08290	0.61	+1.2
1,746,059	-		DZA65_RS08290	0.61	+2.1
1,746,129	+		DZA65_RS08290	0.64	-0.2
1,746,129	+		DZA65_RS08290	0.64	-0.3
1,746,130	-		DZA65_RS08290	0.64	-0.8
1,746,130	-		DZA65_RS08290	0.64	-0.5
1,746,159	+		DZA65_RS08290	0.65	-0.2
1,746,160	-		DZA65_RS08290	0.65	-1.2
1,746,160	-		DZA65_RS08290	0.65	+0.2
1,746,160	-		DZA65_RS08290	0.65	+0.2
1,746,166	+		DZA65_RS08290	0.66	+0.5
1,746,167	-		DZA65_RS08290	0.66	+0.7
1,746,167	-		DZA65_RS08290	0.66	+0.2
1,746,191	-		DZA65_RS08290	0.67	+2.2
1,746,274	+		DZA65_RS08290	0.70	+0.4
1,746,274	+		DZA65_RS08290	0.70	+0.2
1,746,274	+		DZA65_RS08290	0.70	+0.7
1,746,274	+		DZA65_RS08290	0.70	-0.6
1,746,274	+		DZA65_RS08290	0.70	+0.2
1,746,274	+		DZA65_RS08290	0.70	-2.1
1,746,274	+		DZA65_RS08290	0.70	-0.5
1,746,274	+		DZA65_RS08290	0.70	-0.6
1,746,274	+		DZA65_RS08290	0.70	+0.8
1,746,274	+		DZA65_RS08290	0.70	-0.4
1,746,274	+		DZA65_RS08290	0.70	+1.5
1,746,275	-		DZA65_RS08290	0.70	+1.5
1,746,275	-		DZA65_RS08290	0.70	-0.1
1,746,275	-		DZA65_RS08290	0.70	-0.5
1,746,275	-		DZA65_RS08290	0.70	+0.8
1,746,275	-		DZA65_RS08290	0.70	+0.2
1,746,275	-		DZA65_RS08290	0.70	+0.8
1,746,275	-		DZA65_RS08290	0.70	+0.1
1,746,275	-		DZA65_RS08290	0.70	-1.0
1,746,275	-		DZA65_RS08290	0.70	-2.0
1,746,275	-		DZA65_RS08290	0.70	-3.1
1,746,275	-		DZA65_RS08290	0.70	-0.5
1,746,397	+		DZA65_RS08290	0.76	-0.8
1,746,397	+		DZA65_RS08290	0.76	+0.3
1,746,421	+		DZA65_RS08290	0.77	+0.2
1,746,421	+		DZA65_RS08290	0.77	+0.9
1,746,422	-		DZA65_RS08290	0.77	+0.4
1,746,438	+		DZA65_RS08290	0.77	-0.9
1,746,532	+		DZA65_RS08290	0.81	-1.1
1,746,532	+		DZA65_RS08290	0.81	-1.8
1,746,532	+		DZA65_RS08290	0.81	+0.6
1,746,533	-		DZA65_RS08290	0.81	+0.6
1,746,533	-		DZA65_RS08290	0.81	+1.2
1,746,643	+		DZA65_RS08290	0.86	+1.1
1,746,643	+		DZA65_RS08290	0.86	+1.2
1,746,643	+		DZA65_RS08290	0.86	+0.4
1,746,643	+		DZA65_RS08290	0.86	+0.2
1,746,644	-		DZA65_RS08290	0.86	-0.6
1,746,644	-		DZA65_RS08290	0.86	+0.4
1,746,644	-		DZA65_RS08290	0.86	+0.9
1,746,644	-		DZA65_RS08290	0.86	+0.2
1,746,644	-		DZA65_RS08290	0.86	-0.0
1,746,644	-		DZA65_RS08290	0.86	-0.0
1,746,783	+				-0.5
1,746,783	+				-0.0
1,746,784	-				+0.2
1,746,784	-				-2.1
1,746,861	+				-0.3
1,746,862	-				-1.9
1,746,868	+				-0.3
1,746,868	+				-0.1
1,746,868	+				+0.1
1,746,868	+				-1.3
1,746,868	+				-1.2
1,746,868	+				+0.2
1,746,868	+				-0.2
1,746,869	-				+0.9
1,746,869	-				+0.2
1,746,869	-				+0.7
1,746,869	-				-2.8
1,746,869	-				-0.5
1,746,908	-				-1.4
1,746,952	+				-0.4
1,746,953	-				+1.7
1,746,988	+				+0.7
1,746,988	+				-2.3
1,747,266	-		DZA65_RS08295	0.10	-0.2
1,747,580	-		DZA65_RS08295	0.22	-0.1
1,747,588	+		DZA65_RS08295	0.22	-2.3
1,747,588	+		DZA65_RS08295	0.22	-0.4
1,747,694	+		DZA65_RS08295	0.26	-0.3
1,747,694	+		DZA65_RS08295	0.26	+0.1
1,747,694	+		DZA65_RS08295	0.26	-0.4
1,747,695	-		DZA65_RS08295	0.26	-2.8
1,747,695	-		DZA65_RS08295	0.26	+0.1
1,747,695	-		DZA65_RS08295	0.26	+0.2
1,747,695	-		DZA65_RS08295	0.26	+0.3
1,747,700	+		DZA65_RS08295	0.26	+0.7
1,747,700	+		DZA65_RS08295	0.26	-0.2
1,747,700	+		DZA65_RS08295	0.26	-0.4
1,747,701	-		DZA65_RS08295	0.26	+0.2
1,747,701	-		DZA65_RS08295	0.26	-0.0
1,747,738	+		DZA65_RS08295	0.27	+1.2
1,747,738	+		DZA65_RS08295	0.27	-0.2
1,747,738	+		DZA65_RS08295	0.27	-0.3
1,747,738	+		DZA65_RS08295	0.27	-1.3
1,747,738	+		DZA65_RS08295	0.27	-1.6
1,747,738	+		DZA65_RS08295	0.27	+0.1
1,747,738	+		DZA65_RS08295	0.27	-0.0
1,747,738	+		DZA65_RS08295	0.27	+0.3
1,747,739	-		DZA65_RS08295	0.28	+0.6
1,747,739	-		DZA65_RS08295	0.28	-2.2
1,747,739	-		DZA65_RS08295	0.28	+0.2
1,747,739	-		DZA65_RS08295	0.28	-0.6
1,747,739	-		DZA65_RS08295	0.28	-0.8
1,747,739	-		DZA65_RS08295	0.28	+1.1
1,747,739	-		DZA65_RS08295	0.28	-1.0
1,747,739	-		DZA65_RS08295	0.28	+0.5
1,747,739	-		DZA65_RS08295	0.28	-1.5
1,747,742	+				-0.3
1,747,742	+		DZA65_RS08295	0.28	+0.9
1,747,742	+		DZA65_RS08295	0.28	-0.2
1,747,743	-		DZA65_RS08295	0.28	-0.7
1,747,743	-		DZA65_RS08295	0.28	+0.6
1,747,743	-		DZA65_RS08295	0.28	+0.4
1,747,830	+		DZA65_RS08295	0.31	-0.1
1,747,830	+		DZA65_RS08295	0.31	-0.0
1,747,830	+		DZA65_RS08295	0.31	-0.5
1,747,830	+		DZA65_RS08295	0.31	-1.0
1,747,830	+		DZA65_RS08295	0.31	+0.2
1,747,830	+		DZA65_RS08295	0.31	+0.1
1,747,830	+		DZA65_RS08295	0.31	-0.8
1,747,830	+		DZA65_RS08295	0.31	-0.8
1,747,830	+		DZA65_RS08295	0.31	+0.2
1,747,830	+		DZA65_RS08295	0.31	-1.3
1,747,830	+		DZA65_RS08295	0.31	+0.6
1,747,830	+		DZA65_RS08295	0.31	+1.0
1,747,830	+		DZA65_RS08295	0.31	-0.5
1,747,831	-		DZA65_RS08295	0.31	-0.0
1,747,831	-		DZA65_RS08295	0.31	+0.6
1,747,831	-		DZA65_RS08295	0.31	+0.8
1,747,831	-		DZA65_RS08295	0.31	-1.3
1,747,831	-		DZA65_RS08295	0.31	-1.2
1,747,831	-		DZA65_RS08295	0.31	+0.4
1,747,831	-		DZA65_RS08295	0.31	+0.6
1,747,831	-				+1.2
1,747,831	-		DZA65_RS08295	0.31	-1.1