Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07825

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,630,052	+		DZA65_RS07815	0.59	+0.3
1,630,052	+		DZA65_RS07815	0.59	-0.3
1,630,052	+		DZA65_RS07815	0.59	-0.8
1,630,127	+		DZA65_RS07815	0.78	+0.1
1,630,128	-		DZA65_RS07815	0.78	-0.6
1,630,128	-		DZA65_RS07815	0.78	+0.2
1,630,130	+		DZA65_RS07815	0.78	-0.5
1,630,130	+		DZA65_RS07815	0.78	-1.1
1,630,130	+		DZA65_RS07815	0.78	+1.4
1,630,130	+		DZA65_RS07815	0.78	+0.1
1,630,130	+		DZA65_RS07815	0.78	-0.7
1,630,130	+				+2.8
1,630,130	+		DZA65_RS07815	0.78	+0.4
1,630,130	+		DZA65_RS07815	0.78	+0.1
1,630,130	+		DZA65_RS07815	0.78	+0.7
1,630,130	+		DZA65_RS07815	0.78	-1.5
1,630,130	+		DZA65_RS07815	0.78	+0.5
1,630,130	+		DZA65_RS07815	0.78	+0.5
1,630,130	+		DZA65_RS07815	0.78	-0.2
1,630,130	+		DZA65_RS07815	0.78	+0.8
1,630,130	+		DZA65_RS07815	0.78	+0.3
1,630,130	+		DZA65_RS07815	0.78	-1.2
1,630,130	+		DZA65_RS07815	0.78	-2.5
1,630,130	+		DZA65_RS07815	0.78	-0.3
1,630,130	+		DZA65_RS07815	0.78	+0.8
1,630,130	+		DZA65_RS07815	0.78	+1.3
1,630,130	+		DZA65_RS07815	0.78	+0.1
1,630,130	+		DZA65_RS07815	0.78	+1.0
1,630,130	+		DZA65_RS07815	0.78	+0.2
1,630,130	+		DZA65_RS07815	0.78	+0.4
1,630,130	+		DZA65_RS07815	0.78	+0.4
1,630,131	-		DZA65_RS07815	0.79	+1.1
1,630,131	-		DZA65_RS07815	0.79	+0.3
1,630,131	-		DZA65_RS07815	0.79	+0.5
1,630,131	-		DZA65_RS07815	0.79	+0.9
1,630,131	-		DZA65_RS07815	0.79	-0.7
1,630,131	-		DZA65_RS07815	0.79	-0.2
1,630,131	-		DZA65_RS07815	0.79	+0.2
1,630,131	-		DZA65_RS07815	0.79	-1.5
1,630,131	-		DZA65_RS07815	0.79	-0.1
1,630,131	-		DZA65_RS07815	0.79	-0.1
1,630,131	-		DZA65_RS07815	0.79	+0.7
1,630,131	-		DZA65_RS07815	0.79	+1.3
1,630,156	+		DZA65_RS07815	0.85	+0.3
1,630,156	+		DZA65_RS07815	0.85	+0.4
1,630,157	-		DZA65_RS07815	0.85	+0.5
1,630,157	-		DZA65_RS07815	0.85	+1.1
1,630,196	+				-0.2
1,630,247	-				-1.0
1,630,294	+		DZA65_RS07820	0.10	-0.7
1,630,295	-		DZA65_RS07820	0.10	-0.1
1,630,585	+		DZA65_RS07820	0.47	+0.3
1,630,585	+		DZA65_RS07820	0.47	+1.0
1,630,585	+		DZA65_RS07820	0.47	-0.3
1,630,585	+		DZA65_RS07820	0.47	-1.2
1,630,585	+		DZA65_RS07820	0.47	+0.3
1,630,585	+		DZA65_RS07820	0.47	+0.0
1,630,585	+		DZA65_RS07820	0.47	+0.2
1,630,586	-		DZA65_RS07820	0.47	+0.8
1,630,586	-		DZA65_RS07820	0.47	-0.3
1,630,586	-		DZA65_RS07820	0.47	-0.3
1,630,586	-		DZA65_RS07820	0.47	+1.5
1,630,586	-		DZA65_RS07820	0.47	+0.7
1,630,586	-		DZA65_RS07820	0.47	-0.1
1,630,586	-		DZA65_RS07820	0.47	-0.4
1,630,586	-		DZA65_RS07820	0.47	+0.5
1,630,586	-		DZA65_RS07820	0.47	+1.1
1,630,586	-		DZA65_RS07820	0.47	-0.7
1,630,586	-		DZA65_RS07820	0.47	+0.6
1,630,586	-		DZA65_RS07820	0.47	-1.1
1,630,586	-		DZA65_RS07820	0.47	-2.7
1,630,586	-		DZA65_RS07820	0.47	-0.6
1,630,630	+		DZA65_RS07820	0.53	-0.1
1,630,631	-		DZA65_RS07820	0.53	+0.8
1,630,673	-		DZA65_RS07820	0.58	+0.5
1,630,829	+		DZA65_RS07820	0.78	+1.6
1,630,830	-		DZA65_RS07820	0.78	-0.5
1,630,830	-		DZA65_RS07820	0.78	-0.5
1,630,849	-		DZA65_RS07820	0.80	+0.3
1,630,849	-		DZA65_RS07820	0.80	+0.1
1,630,886	-		DZA65_RS07820	0.85	-2.3
1,630,892	-		DZA65_RS07820	0.86	+0.8
1,630,892	-		DZA65_RS07820	0.86	-0.3
1,630,892	-		DZA65_RS07820	0.86	+2.1
1,630,892	-		DZA65_RS07820	0.86	-1.5
1,630,892	-		DZA65_RS07820	0.86	-0.4
1,630,892	-		DZA65_RS07820	0.86	-0.1
1,630,955	+				+1.8
1,630,955	+				+1.3
1,630,956	-				+0.3
1,630,956	-				-1.0
1,630,973	-				-0.1
1,630,997	+				-2.5
1,630,997	+				-0.3
1,630,997	+				+0.0
1,630,997	+				-0.7
1,630,998	-				-1.3
1,630,998	-				+1.0
1,630,998	-				+1.1
1,631,129	+		DZA65_RS07825	0.23	-0.5
1,631,129	+		DZA65_RS07825	0.23	+1.1
1,631,130	-		DZA65_RS07825	0.23	+0.8
1,631,130	-		DZA65_RS07825	0.23	+0.5
1,631,130	-		DZA65_RS07825	0.23	+1.5
1,631,250	+		DZA65_RS07825	0.44	+1.3
1,631,251	-		DZA65_RS07825	0.44	+0.9
1,631,251	-		DZA65_RS07825	0.44	+0.7
1,631,251	-		DZA65_RS07825	0.44	+0.5
1,631,251	-		DZA65_RS07825	0.44	+0.7
1,631,431	+		DZA65_RS07825	0.76	-0.9
1,631,431	+		DZA65_RS07825	0.76	+0.7
1,631,432	-		DZA65_RS07825	0.76	+0.6
1,631,432	-		DZA65_RS07825	0.76	-2.7
1,631,432	-		DZA65_RS07825	0.76	+0.4
1,631,466	+		DZA65_RS07825	0.82	+0.2
1,631,467	-		DZA65_RS07825	0.82	-0.6
1,631,517	+				+0.3
1,631,517	+				+0.4
1,631,563	+				+0.6
1,631,563	+				-0.2
1,631,563	+				-0.3
1,631,563	+				-0.3
1,631,564	-				-0.7
1,631,564	-				-0.4
1,631,564	-				-1.7
1,631,564	-				+1.4
1,631,564	-				-1.0
1,631,688	-				-2.2
1,631,695	+				-1.7
1,631,695	+				-0.0
1,631,695	+				-0.2
1,631,756	+		DZA65_RS07830	0.10	-0.7
1,631,756	+		DZA65_RS07830	0.10	+0.0
1,631,757	-		DZA65_RS07830	0.10	+0.5
1,631,757	-		DZA65_RS07830	0.10	-0.0
1,631,757	-		DZA65_RS07830	0.10	-0.2
1,631,757	-		DZA65_RS07830	0.10	-1.0
1,631,782	+		DZA65_RS07830	0.12	+1.0
1,631,783	-		DZA65_RS07830	0.12	-0.1
1,631,877	+		DZA65_RS07830	0.17	+0.7
1,631,877	+		DZA65_RS07830	0.17	+0.1
1,631,878	-		DZA65_RS07830	0.17	+1.1
1,631,899	+		DZA65_RS07830	0.18	+0.5
1,632,007	+				-0.2
1,632,008	-		DZA65_RS07830	0.25	-2.1
1,632,008	-		DZA65_RS07830	0.25	+0.3
1,632,008	-		DZA65_RS07830	0.25	+0.3
1,632,131	-		DZA65_RS07830	0.32	+0.3
1,632,131	-		DZA65_RS07830	0.32	-1.6
1,632,316	+		DZA65_RS07830	0.43	+0.8
1,632,316	+		DZA65_RS07830	0.43	-0.7
1,632,317	-		DZA65_RS07830	0.43	+0.3
1,632,317	-		DZA65_RS07830	0.43	-0.2
1,632,470	+		DZA65_RS07830	0.52	-2.1
1,632,470	+		DZA65_RS07830	0.52	-0.6
1,632,482	+		DZA65_RS07830	0.52	-0.4
1,632,483	-		DZA65_RS07830	0.52	-0.5
1,632,535	+		DZA65_RS07830	0.55	+1.3
1,632,535	+		DZA65_RS07830	0.55	-0.9
1,632,536	-		DZA65_RS07830	0.55	-1.5
1,632,536	-		DZA65_RS07830	0.55	-0.0