Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07665

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,594,252	+				+0.3
1,594,252	+				-1.5
1,594,257	-				-0.5
1,594,295	-				-0.1
1,594,346	+				-0.5
1,594,347	-				+0.3
1,594,359	+				-0.5
1,594,359	+				-0.3
1,594,360	-				-0.1
1,594,396	-				-1.3
1,594,480	+		DZA65_RS07655	0.49	+0.6
1,594,485	+		DZA65_RS07655	0.51	-1.3
1,594,485	+		DZA65_RS07655	0.51	+1.3
1,594,485	+		DZA65_RS07655	0.51	-0.5
1,594,485	+		DZA65_RS07655	0.51	-0.3
1,594,485	+		DZA65_RS07655	0.51	+0.6
1,594,486	-		DZA65_RS07655	0.52	-1.1
1,594,486	-		DZA65_RS07655	0.52	+0.1
1,594,486	-				+1.7
1,594,496	+		DZA65_RS07655	0.57	+0.1
1,594,496	+		DZA65_RS07655	0.57	-2.5
1,594,496	+		DZA65_RS07655	0.57	-0.8
1,594,496	+		DZA65_RS07655	0.57	-0.2
1,594,496	+		DZA65_RS07655	0.57	+1.3
1,594,509	-		DZA65_RS07655	0.63	-0.1
1,594,551	-		DZA65_RS07655	0.84	+2.6
1,594,943	-		DZA65_RS07660	0.63	-0.5
1,594,960	+		DZA65_RS07660	0.66	-1.1
1,594,960	+		DZA65_RS07660	0.66	-0.5
1,594,961	-		DZA65_RS07660	0.66	-2.3
1,594,961	-		DZA65_RS07660	0.66	-1.2
1,595,017	-		DZA65_RS07660	0.76	-1.0
1,595,053	+		DZA65_RS07660	0.82	-0.1
1,595,054	-		DZA65_RS07660	0.82	-0.3
1,595,088	-		DZA65_RS07660	0.88	+0.3
1,595,128	+				+0.3
1,595,138	+				+2.6
1,595,157	+				+0.6
1,595,158	-				-0.1
1,595,206	+		DZA65_RS07665	0.16	-2.2
1,595,292	+		DZA65_RS07665	0.61	-0.6
1,595,293	-		DZA65_RS07665	0.61	-1.2
1,595,293	-		DZA65_RS07665	0.61	-0.2
1,595,293	-		DZA65_RS07665	0.61	-1.3
1,595,298	+		DZA65_RS07665	0.64	+1.3
1,595,298	+		DZA65_RS07665	0.64	-1.2
1,595,368	+				-1.0
1,595,368	+				-0.6
1,595,368	+				+2.3
1,595,368	+				+1.1
1,595,368	+				+0.0
1,595,368	+				+0.7
1,595,368	+				-1.2
1,595,368	+				-1.0
1,595,369	-				-0.7
1,595,369	-				-1.0
1,595,369	-				-1.3
1,595,451	+				-1.7
1,595,452	-				+0.6
1,595,490	-				-1.0
1,595,526	-				-0.9
1,595,529	+				-0.5
1,595,547	+				+0.3
1,595,547	+				+0.9
1,595,631	+				+1.3
1,595,641	-				-0.3
1,595,651	+				+0.6
1,595,682	+				-0.3
1,595,683	-				-1.3
1,595,683	-				-0.4
1,595,683	-				-0.1
1,595,685	-				+1.5
1,595,687	+				-0.5
1,595,752	-				-0.6
1,595,778	+				+0.5
1,595,779	-				+0.4
1,595,822	-				+0.5
1,595,822	-				-0.7
1,595,822	-				+0.5
1,595,900	+				+0.0
1,595,900	+				+0.3
1,595,901	-				-0.1
1,595,919	-				+0.7
1,595,919	-				+1.0
1,595,951	+				+1.1
1,595,972	-				+0.3
1,595,972	-				+0.8
1,595,991	+				-2.2
1,595,991	+				+0.1
1,595,992	-				+0.6
1,595,992	-				-1.2
1,596,000	+				-0.1
1,596,000	+				-0.2
1,596,000	+				+0.4
1,596,000	+				-1.5
1,596,000	+				-1.7
1,596,000	+				-1.9
1,596,000	+				-0.2
1,596,000	+				+1.5
1,596,000	+				+0.0
1,596,000	+				+2.4
1,596,000	+				+0.4
1,596,000	+				-0.1
1,596,001	-				+1.8
1,596,001	-				+1.5
1,596,001	-				-0.4
1,596,001	-				-0.3
1,596,001	-				-0.9
1,596,001	-				-1.3
1,596,001	-				-0.7
1,596,001	-				+0.1
1,596,001	-				+0.7
1,596,001	-				-0.3
1,596,001	-				-0.3
1,596,036	+				+0.3
1,596,036	+				-2.1
1,596,037	-				-2.3
1,596,037	-				+2.3
1,596,037	-				+0.3
1,596,037	-				-1.3
1,596,037	-				+0.0
1,596,037	-				-1.1
1,596,037	-				+0.2
1,596,037	-				+0.3
1,596,059	+				-0.2
1,596,095	+		DZA65_RS07670	0.23	+1.8
1,596,095	+		DZA65_RS07670	0.23	-1.5
1,596,095	+		DZA65_RS07670	0.23	+0.0
1,596,095	+		DZA65_RS07670	0.23	-1.7
1,596,095	+		DZA65_RS07670	0.23	+0.6
1,596,096	-		DZA65_RS07670	0.24	+0.4
1,596,096	-		DZA65_RS07670	0.24	-2.3
1,596,096	-		DZA65_RS07670	0.24	-0.3
1,596,096	-		DZA65_RS07670	0.24	+0.6
1,596,096	-		DZA65_RS07670	0.24	-0.4
1,596,098	-		DZA65_RS07670	0.24	-1.7
1,596,099	+		DZA65_RS07670	0.25	-0.9
1,596,099	+		DZA65_RS07670	0.25	-0.5
1,596,099	+		DZA65_RS07670	0.25	+0.0
1,596,099	+		DZA65_RS07670	0.25	-0.7
1,596,099	+		DZA65_RS07670	0.25	-0.5
1,596,099	+		DZA65_RS07670	0.25	-1.0
1,596,100	-		DZA65_RS07670	0.25	+1.8
1,596,100	-		DZA65_RS07670	0.25	-0.1
1,596,100	-		DZA65_RS07670	0.25	+0.8
1,596,100	-		DZA65_RS07670	0.25	+0.5
1,596,100	-		DZA65_RS07670	0.25	+1.4
1,596,100	-		DZA65_RS07670	0.25	-0.5
1,596,105	+		DZA65_RS07670	0.27	-0.7
1,596,105	+		DZA65_RS07670	0.27	-0.2
1,596,105	+		DZA65_RS07670	0.27	-0.7
1,596,105	+		DZA65_RS07670	0.27	-1.1
1,596,105	+		DZA65_RS07670	0.27	-0.1
1,596,106	-		DZA65_RS07670	0.28	+0.7
1,596,106	-		DZA65_RS07670	0.28	+0.9
1,596,116	+		DZA65_RS07670	0.31	-0.2
1,596,116	+		DZA65_RS07670	0.31	-0.8
1,596,116	+		DZA65_RS07670	0.31	+1.1
1,596,117	-		DZA65_RS07670	0.32	+0.3
1,596,122	+		DZA65_RS07670	0.34	-2.9
1,596,122	+		DZA65_RS07670	0.34	+1.3
1,596,122	+		DZA65_RS07670	0.34	+0.6
1,596,122	+		DZA65_RS07670	0.34	-0.7
1,596,123	-		DZA65_RS07670	0.34	-3.3
1,596,123	-		DZA65_RS07670	0.34	+1.8
1,596,125	+		DZA65_RS07670	0.35	+0.6
1,596,126	-		DZA65_RS07670	0.35	+0.4
1,596,199	-		DZA65_RS07670	0.64	+0.0
1,596,205	+		DZA65_RS07670	0.66	+0.3
1,596,205	+		DZA65_RS07670	0.66	-0.6
1,596,205	+		DZA65_RS07670	0.66	+0.6
1,596,206	-		DZA65_RS07670	0.66	-0.2
1,596,227	+		DZA65_RS07670	0.74	+0.3
1,596,328	-				-0.7