Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07540

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,569,305	+		DZA65_RS07535	0.85	-1.5
1,569,305	+		DZA65_RS07535	0.85	+1.2
1,569,305	+		DZA65_RS07535	0.85	+0.2
1,569,306	-		DZA65_RS07535	0.85	-0.7
1,569,306	-		DZA65_RS07535	0.85	+0.6
1,569,306	-		DZA65_RS07535	0.85	-0.4
1,569,306	-		DZA65_RS07535	0.85	+0.3
1,569,306	-		DZA65_RS07535	0.85	-0.1
1,569,309	+		DZA65_RS07535	0.85	+0.3
1,569,309	+		DZA65_RS07535	0.85	-2.0
1,569,310	-		DZA65_RS07535	0.85	-0.5
1,569,310	-		DZA65_RS07535	0.85	-0.4
1,569,392	-		DZA65_RS07535	0.86	-0.7
1,569,465	+		DZA65_RS07535	0.87	+0.0
1,569,465	+		DZA65_RS07535	0.87	-1.0
1,569,465	+		DZA65_RS07535	0.87	-0.5
1,569,490	+		DZA65_RS07535	0.88	-1.2
1,569,490	+		DZA65_RS07535	0.88	-0.1
1,569,490	+		DZA65_RS07535	0.88	+0.1
1,569,490	+		DZA65_RS07535	0.88	+0.7
1,569,490	+		DZA65_RS07535	0.88	-2.0
1,569,490	+		DZA65_RS07535	0.88	+0.5
1,569,490	+		DZA65_RS07535	0.88	-0.1
1,569,490	+		DZA65_RS07535	0.88	-0.5
1,569,490	+		DZA65_RS07535	0.88	-0.9
1,569,490	+		DZA65_RS07535	0.88	-0.9
1,569,491	-		DZA65_RS07535	0.88	-0.1
1,569,491	-		DZA65_RS07535	0.88	+0.7
1,569,491	-		DZA65_RS07535	0.88	+0.7
1,569,491	-		DZA65_RS07535	0.88	-0.7
1,569,491	-		DZA65_RS07535	0.88	-0.4
1,569,491	-		DZA65_RS07535	0.88	+1.3
1,569,491	-		DZA65_RS07535	0.88	-0.0
1,569,491	-		DZA65_RS07535	0.88	+0.1
1,569,491	-		DZA65_RS07535	0.88	+0.7
1,569,491	-		DZA65_RS07535	0.88	+0.1
1,569,491	-		DZA65_RS07535	0.88	-0.7
1,569,491	-		DZA65_RS07535	0.88	-0.5
1,569,491	-		DZA65_RS07535	0.88	-1.3
1,569,491	-		DZA65_RS07535	0.88	-0.0
1,569,491	-		DZA65_RS07535	0.88	-1.3
1,569,491	-		DZA65_RS07535	0.88	+0.3
1,569,491	-		DZA65_RS07535	0.88	+1.1
1,569,491	-		DZA65_RS07535	0.88	-2.9
1,569,491	-		DZA65_RS07535	0.88	-0.5
1,569,492	+		DZA65_RS07535	0.88	-0.5
1,569,493	-		DZA65_RS07535	0.88	-0.2
1,569,493	-		DZA65_RS07535	0.88	-0.1
1,569,561	-		DZA65_RS07535	0.89	-0.0
1,569,561	-		DZA65_RS07535	0.89	-0.1
1,569,568	+		DZA65_RS07535	0.89	-0.7
1,569,569	-		DZA65_RS07535	0.89	+0.1
1,569,569	-		DZA65_RS07535	0.89	+0.3
1,569,569	-		DZA65_RS07535	0.89	-0.1
1,569,573	-		DZA65_RS07535	0.89	+1.8
1,569,573	-		DZA65_RS07535	0.89	+0.6
1,569,704	+				-0.0
1,569,704	+				+1.5
1,569,704	+				-0.1
1,569,705	-				-0.5
1,569,705	-				+0.3
1,569,705	-				+2.1
1,569,705	-				+0.3
1,569,705	-				-0.0
1,569,705	-				-1.1
1,569,708	+				-0.5
1,569,709	-				+0.1
1,569,761	+				+0.3
1,569,761	+				-0.1
1,569,772	+				-0.7
1,569,772	+				-1.0
1,569,772	+				+1.3
1,569,773	-				+0.0
1,569,773	-				-0.7
1,569,812	+				+0.9
1,569,813	-				+1.6
1,569,867	+				+0.9
1,569,868	-				+0.1
1,569,976	+				-1.7
1,569,976	+				-0.2
1,569,977	-				+0.6
1,569,977	-				+0.3
1,569,977	-				+0.6
1,569,977	-				-1.0
1,569,977	-				+1.4
1,569,997	+				-2.2
1,570,021	+				-0.0
1,570,022	-				+0.1
1,570,022	-				-1.9
1,570,022	-				-0.9
1,570,040	+				+0.7
1,570,040	+				-0.7
1,570,041	-				+0.5
1,570,041	-				+1.6
1,570,054	+				-0.5
1,570,054	+				-0.5
1,570,116	-				-1.7
1,570,148	-				-1.7
1,570,150	-				-0.7
1,570,156	+				-0.7
1,570,196	+				-1.1
1,570,197	-				+0.6
1,570,197	-				-0.5
1,570,215	+				+0.7
1,570,215	+				+0.8
1,570,215	+				+0.3
1,570,215	+				+0.3
1,570,216	-				+0.2
1,570,217	+				-0.5
1,570,218	-				-0.6
1,570,218	-				-0.1
1,570,222	+				-1.3
1,570,284	+				+1.1
1,570,284	+				-0.2
1,570,284	+				+3.6
1,570,284	+				+0.3
1,570,284	+				-0.1
1,570,284	+				-0.4
1,570,284	+				-0.0
1,570,284	+				+0.3
1,570,284	+				-0.7
1,570,284	+				-1.2
1,570,284	+				-1.3
1,570,285	-				-1.2
1,570,285	-				+0.3
1,570,285	-				+0.4
1,570,285	-				+0.7
1,570,285	-				+0.9
1,570,285	-				-0.2
1,570,285	-				-1.3
1,570,285	-				-1.3
1,570,285	-				-0.5
1,570,343	+				+2.3
1,570,343	+				+0.7
1,570,344	-				+0.3
1,570,344	-				+1.3
1,570,344	-				+0.6
1,570,344	-				+0.5
1,570,347	+				+0.6
1,570,347	+				-0.6
1,570,347	+				+0.5
1,570,348	-				+0.6
1,570,348	-				+0.6
1,570,348	-				-0.8
1,570,382	+				+0.3
1,570,383	-				-0.7
1,570,385	+				-0.2
1,570,410	+				+0.3
1,570,459	+		DZA65_RS07540	0.11	+0.2
1,570,481	+		DZA65_RS07540	0.12	-0.2
1,570,503	+		DZA65_RS07540	0.13	+1.8
1,570,504	-		DZA65_RS07540	0.14	-1.7
1,570,504	-		DZA65_RS07540	0.14	+1.3
1,570,708	-		DZA65_RS07540	0.23	+0.6
1,570,720	+		DZA65_RS07540	0.24	-1.3
1,570,721	-		DZA65_RS07540	0.24	-0.8
1,570,721	-		DZA65_RS07540	0.24	+0.3
1,570,721	-		DZA65_RS07540	0.24	+0.8
1,570,768	+		DZA65_RS07540	0.26	-0.1
1,570,768	+		DZA65_RS07540	0.26	-0.7
1,570,768	+		DZA65_RS07540	0.26	-0.7
1,570,768	+		DZA65_RS07540	0.26	+2.0
1,570,769	-		DZA65_RS07540	0.26	+0.0
1,570,769	-		DZA65_RS07540	0.26	-2.3
1,570,772	+		DZA65_RS07540	0.26	-1.7
1,570,772	+		DZA65_RS07540	0.26	-0.1
1,570,772	+		DZA65_RS07540	0.26	-0.7
1,570,772	+		DZA65_RS07540	0.26	-0.5
1,570,772	+		DZA65_RS07540	0.26	-0.6
1,570,773	-		DZA65_RS07540	0.26	+0.3
1,570,791	+		DZA65_RS07540	0.27	-0.2
1,570,792	-		DZA65_RS07540	0.27	-0.6
1,570,792	-		DZA65_RS07540	0.27	-0.1
1,570,802	+		DZA65_RS07540	0.28	-1.5
1,570,864	+		DZA65_RS07540	0.31	-1.6
1,570,864	+		DZA65_RS07540	0.31	+0.6
1,570,865	-		DZA65_RS07540	0.31	+1.3
1,570,869	+		DZA65_RS07540	0.31	-1.1
1,570,870	-		DZA65_RS07540	0.31	-2.7
1,570,870	-		DZA65_RS07540	0.31	-0.9
1,570,870	-		DZA65_RS07540	0.31	-0.0
1,570,938	+		DZA65_RS07540	0.34	+0.3
1,570,989	-		DZA65_RS07540	0.37	+0.5
1,570,989	-		DZA65_RS07540	0.37	-1.1
1,571,008	-		DZA65_RS07540	0.38	-0.1
1,571,027	-		DZA65_RS07540	0.38	-0.7
1,571,054	+		DZA65_RS07540	0.40	-0.8
1,571,055	-		DZA65_RS07540	0.40	-1.1
1,571,064	+		DZA65_RS07540	0.40	+1.3
1,571,191	-		DZA65_RS07540	0.46	+0.7
1,571,218	+		DZA65_RS07540	0.48	-1.9
1,571,219	-		DZA65_RS07540	0.48	-1.0
1,571,219	-		DZA65_RS07540	0.48	-1.3
1,571,220	+		DZA65_RS07540	0.48	-0.7
1,571,220	+		DZA65_RS07540	0.48	+0.3
1,571,220	+		DZA65_RS07540	0.48	+0.3
1,571,220	+		DZA65_RS07540	0.48	+1.3
1,571,220	+		DZA65_RS07540	0.48	-0.3
1,571,220	+		DZA65_RS07540	0.48	-1.4
1,571,221	-		DZA65_RS07540	0.48	-2.3
1,571,221	-		DZA65_RS07540	0.48	-0.9
1,571,221	-		DZA65_RS07540	0.48	-0.5
1,571,221	-		DZA65_RS07540	0.48	-2.7
1,571,221	-		DZA65_RS07540	0.48	-0.1
1,571,221	-		DZA65_RS07540	0.48	+1.6
1,571,221	-		DZA65_RS07540	0.48	+0.9
1,571,221	-		DZA65_RS07540	0.48	-0.1
1,571,266	-		DZA65_RS07540	0.50	+1.4
1,571,267	+		DZA65_RS07540	0.50	-0.3
1,571,267	+		DZA65_RS07540	0.50	-0.2
1,571,267	+		DZA65_RS07540	0.50	+0.1
1,571,267	+		DZA65_RS07540	0.50	-0.5
1,571,267	+		DZA65_RS07540	0.50	-0.7
1,571,267	+		DZA65_RS07540	0.50	-0.7
1,571,267	+		DZA65_RS07540	0.50	-0.9
1,571,267	+		DZA65_RS07540	0.50	-1.3
1,571,267	+		DZA65_RS07540	0.50	+0.7
1,571,267	+		DZA65_RS07540	0.50	+0.6
1,571,267	+		DZA65_RS07540	0.50	-0.2
1,571,267	+		DZA65_RS07540	0.50	-1.3
1,571,268	-		DZA65_RS07540	0.50	-2.3
1,571,268	-		DZA65_RS07540	0.50	+0.2
1,571,268	-		DZA65_RS07540	0.50	-0.7
1,571,268	-		DZA65_RS07540	0.50	+0.8
1,571,298	+		DZA65_RS07540	0.51	-0.5
1,571,298	+		DZA65_RS07540	0.51	+0.2
1,571,298	+		DZA65_RS07540	0.51	-0.9
1,571,299	-		DZA65_RS07540	0.51	+0.5
1,571,299	-		DZA65_RS07540	0.51	+1.3
1,571,299	-		DZA65_RS07540	0.51	+0.5
1,571,320	+		DZA65_RS07540	0.52	-1.5
1,571,321	-		DZA65_RS07540	0.53	-0.7
1,571,322	+		DZA65_RS07540	0.53	+0.3
1,571,322	+		DZA65_RS07540	0.53	-1.9
1,571,322	+		DZA65_RS07540	0.53	-0.5
1,571,322	+		DZA65_RS07540	0.53	+0.4
1,571,322	+		DZA65_RS07540	0.53	-1.4
1,571,323	-		DZA65_RS07540	0.53	+0.2
1,571,323	-		DZA65_RS07540	0.53	-1.5
1,571,390	+		DZA65_RS07540	0.56	+0.8
1,571,390	+		DZA65_RS07540	0.56	-2.0
1,571,391	-		DZA65_RS07540	0.56	-2.0
1,571,407	-		DZA65_RS07540	0.57	-1.3
1,571,407	-		DZA65_RS07540	0.57	-0.6
1,571,443	-		DZA65_RS07540	0.58	-1.5
1,571,443	-		DZA65_RS07540	0.58	-1.2
1,571,462	+		DZA65_RS07540	0.59	-2.9
1,571,462	+		DZA65_RS07540	0.59	-0.9
1,571,516	+		DZA65_RS07540	0.62	+0.5
1,571,516	+		DZA65_RS07540	0.62	-1.0
1,571,517	-		DZA65_RS07540	0.62	-0.2
1,571,622	+		DZA65_RS07540	0.67	+0.0
1,571,666	+		DZA65_RS07540	0.69	+0.1
1,571,717	+		DZA65_RS07540	0.71	+0.1
1,571,740	+		DZA65_RS07540	0.73	+0.7
1,571,740	+		DZA65_RS07540	0.73	-0.2
1,571,740	+		DZA65_RS07540	0.73	+0.8
1,571,741	-		DZA65_RS07540	0.73	+0.3
1,571,741	-		DZA65_RS07540	0.73	+2.4
1,571,741	-		DZA65_RS07540	0.73	-0.1
1,571,741	-		DZA65_RS07540	0.73	+0.3
1,571,747	+		DZA65_RS07540	0.73	-0.3
1,571,793	-		DZA65_RS07540	0.75	-0.5
1,571,797	+		DZA65_RS07540	0.75	-3.0
1,571,798	+		DZA65_RS07540	0.75	+1.0
1,571,798	+		DZA65_RS07540	0.75	-0.0
1,571,799	-		DZA65_RS07540	0.75	-1.6
1,571,810	+		DZA65_RS07540	0.76	+0.6
1,571,863	+		DZA65_RS07540	0.78	+1.0
1,571,910	+		DZA65_RS07540	0.81	+1.3
1,571,911	-		DZA65_RS07540	0.81	-1.5
1,572,042	+		DZA65_RS07540	0.87	-0.3
1,572,043	-		DZA65_RS07540	0.87	-0.7
1,572,049	+		DZA65_RS07540	0.87	+0.1
1,572,050	-		DZA65_RS07540	0.87	-0.7
1,572,050	-		DZA65_RS07540	0.87	+0.3
1,572,050	-		DZA65_RS07540	0.87	+0.1
1,572,050	-		DZA65_RS07540	0.87	+0.1
1,572,053	-		DZA65_RS07540	0.87	+0.4
1,572,053	-		DZA65_RS07540	0.87	-1.5
1,572,059	-		DZA65_RS07540	0.88	-1.3
1,572,059	-		DZA65_RS07540	0.88	-0.7
1,572,062	+		DZA65_RS07540	0.88	+0.1
1,572,062	+		DZA65_RS07540	0.88	+0.5
1,572,062	+		DZA65_RS07540	0.88	-1.1
1,572,063	-		DZA65_RS07540	0.88	+0.1
1,572,063	-		DZA65_RS07540	0.88	+2.4
1,572,252	-				+0.1
1,572,252	-				+0.0
1,572,257	-				-0.0
1,572,283	+				-0.7
1,572,293	+				-1.3
1,572,293	+				-1.3
1,572,294	-				+1.0
1,572,294	-				-0.4
1,572,295	+				+0.3
1,572,295	+				+0.1
1,572,295	+				-0.1
1,572,295	+				-0.9
1,572,295	+				-1.3
1,572,296	-				-1.5
1,572,296	-				-0.4
1,572,296	-				-1.9
1,572,296	-				-1.0
1,572,296	-				-0.0
1,572,296	-				+1.9
1,572,296	-				-0.5
1,572,305	+				+0.5
1,572,305	+				+0.7
1,572,316	-				+0.5
1,572,316	-				+0.4
1,572,328	-				-0.1
1,572,328	-				-0.7
1,572,328	-				-0.5
1,572,407	+				+2.3
1,572,408	-				+0.0
1,572,408	-				-0.7
1,572,423	+				+1.0
1,572,472	+				+0.2
1,572,473	-				-0.3
1,572,473	-				-1.2
1,572,497	+				-0.7
1,572,498	-				-0.3
1,572,499	+				+1.9
1,572,499	+				-0.5
1,572,499	+				+0.6
1,572,500	-				-0.5
1,572,505	-				-0.6
1,572,505	-				-2.2
1,572,510	+				+0.1
1,572,511	-				+0.8
1,572,511	-				+0.6
1,572,604	+		DZA65_RS07545	0.11	-0.2
1,572,632	+		DZA65_RS07545	0.12	+0.7
1,572,632	+		DZA65_RS07545	0.12	-1.5
1,572,633	-		DZA65_RS07545	0.12	+0.3
1,572,633	-		DZA65_RS07545	0.12	-1.9
1,572,665	-		DZA65_RS07545	0.13	-0.1
1,572,720	+		DZA65_RS07545	0.15	-1.3
1,572,720	+		DZA65_RS07545	0.15	+0.3
1,572,720	+		DZA65_RS07545	0.15	-0.9
1,572,720	+		DZA65_RS07545	0.15	+1.3
1,572,720	+		DZA65_RS07545	0.15	-1.3
1,572,721	-		DZA65_RS07545	0.15	+0.8
1,572,721	-		DZA65_RS07545	0.15	+0.1
1,572,721	-		DZA65_RS07545	0.15	+0.6
1,572,761	+		DZA65_RS07545	0.17	-2.3
1,572,814	-		DZA65_RS07545	0.19	-0.7
1,572,887	-		DZA65_RS07545	0.22	-1.3
1,572,989	+		DZA65_RS07545	0.26	-0.1
1,572,990	-		DZA65_RS07545	0.26	+0.3
1,572,990	-		DZA65_RS07545	0.26	-0.2
1,572,990	-		DZA65_RS07545	0.26	-0.3
1,572,990	-		DZA65_RS07545	0.26	+0.6
1,572,990	-		DZA65_RS07545	0.26	-0.1
1,572,990	-		DZA65_RS07545	0.26	+0.2
1,573,023	-		DZA65_RS07545	0.27	+0.5
1,573,023	-		DZA65_RS07545	0.27	-1.3
1,573,049	+		DZA65_RS07545	0.28	+0.5
1,573,049	+		DZA65_RS07545	0.28	+0.5
1,573,049	+		DZA65_RS07545	0.28	-1.1
1,573,049	+		DZA65_RS07545	0.28	+0.1
1,573,049	+		DZA65_RS07545	0.28	+1.3
1,573,050	-		DZA65_RS07545	0.28	-1.1
1,573,050	-		DZA65_RS07545	0.28	-0.3
1,573,050	-		DZA65_RS07545	0.28	-0.7
1,573,052	-		DZA65_RS07545	0.28	+0.7
1,573,052	-		DZA65_RS07545	0.28	-0.3
1,573,052	-		DZA65_RS07545	0.28	+0.9
1,573,076	+		DZA65_RS07545	0.29	+0.7
1,573,077	-		DZA65_RS07545	0.29	+0.8
1,573,085	+		DZA65_RS07545	0.29	-0.1
1,573,086	-		DZA65_RS07545	0.30	-0.1
1,573,086	-		DZA65_RS07545	0.30	+0.9
1,573,086	-		DZA65_RS07545	0.30	+0.3
1,573,131	-		DZA65_RS07545	0.31	+1.5
1,573,175	+		DZA65_RS07545	0.33	-1.5
1,573,175	+		DZA65_RS07545	0.33	+0.6
1,573,176	-		DZA65_RS07545	0.33	-0.7
1,573,253	+		DZA65_RS07545	0.36	-0.7
1,573,253	+		DZA65_RS07545	0.36	-0.7
1,573,291	-		DZA65_RS07545	0.37	-1.7