Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07015

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,451,811	+		DZA65_RS07005	0.63	-1.0
1,451,811	+		DZA65_RS07005	0.63	+0.6
1,451,812	-		DZA65_RS07005	0.63	-1.1
1,451,812	-		DZA65_RS07005	0.63	-1.1
1,451,812	-		DZA65_RS07005	0.63	-1.0
1,451,812	-		DZA65_RS07005	0.63	-0.1
1,451,812	-		DZA65_RS07005	0.63	-0.7
1,451,812	-		DZA65_RS07005	0.63	-0.6
1,451,812	-		DZA65_RS07005	0.63	+0.9
1,451,812	-		DZA65_RS07005	0.63	-0.5
1,451,864	+				+0.0
1,451,865	-				-0.3
1,451,865	-				-2.5
1,451,925	-				+0.5
1,451,925	-				+1.7
1,451,957	+				+0.6
1,451,957	+				+0.3
1,451,981	+				+0.8
1,451,981	+				-0.1
1,451,982	-				-0.4
1,451,988	+				+0.7
1,451,989	-				+1.6
1,451,992	+				-0.2
1,451,993	-				-0.6
1,452,003	+				-0.7
1,452,011	-				-1.9
1,452,011	-				-0.1
1,452,011	-				+0.8
1,452,056	+				-0.7
1,452,056	+				+0.5
1,452,056	+				-0.3
1,452,057	-				+1.5
1,452,057	-				+0.2
1,452,057	-				+1.7
1,452,088	+				+1.1
1,452,101	-				+0.9
1,452,123	+		DZA65_RS07010	0.11	+0.6
1,452,124	-		DZA65_RS07010	0.11	+0.9
1,452,215	+				-0.7
1,452,302	+		DZA65_RS07010	0.34	+1.6
1,452,302	+		DZA65_RS07010	0.34	+0.6
1,452,302	+		DZA65_RS07010	0.34	-0.0
1,452,302	+		DZA65_RS07010	0.34	+0.1
1,452,303	-		DZA65_RS07010	0.34	-0.3
1,452,303	-				+0.3
1,452,303	-		DZA65_RS07010	0.34	+0.6
1,452,303	-				+0.3
1,452,303	-		DZA65_RS07010	0.34	-0.8
1,452,341	+		DZA65_RS07010	0.39	+2.3
1,452,342	-		DZA65_RS07010	0.39	-0.4
1,452,415	+		DZA65_RS07010	0.48	+1.3
1,452,491	+		DZA65_RS07010	0.58	-0.4
1,452,491	+		DZA65_RS07010	0.58	-0.6
1,452,491	+		DZA65_RS07010	0.58	+0.6
1,452,491	+		DZA65_RS07010	0.58	+0.8
1,452,491	+		DZA65_RS07010	0.58	+0.6
1,452,491	+		DZA65_RS07010	0.58	-0.4
1,452,492	-		DZA65_RS07010	0.58	+0.7
1,452,492	-		DZA65_RS07010	0.58	-0.4
1,452,492	-		DZA65_RS07010	0.58	+0.5
1,452,492	-		DZA65_RS07010	0.58	+3.2
1,452,585	+		DZA65_RS07010	0.70	+0.8
1,452,586	-		DZA65_RS07010	0.70	+1.3
1,452,676	+		DZA65_RS07010	0.81	-0.0
1,452,676	+		DZA65_RS07010	0.81	+0.4
1,452,706	+		DZA65_RS07010	0.85	+0.7
1,452,752	+				-0.4
1,452,785	-				-0.3
1,452,791	+				-1.3
1,452,791	+				+0.4
1,452,792	-				-1.0
1,452,826	-				-1.3
1,452,855	-				+1.1
1,452,855	-				+0.3
1,452,988	+		DZA65_RS07015	0.26	+0.7
1,453,012	+				+0.3
1,453,013	-		DZA65_RS07015	0.29	+0.1
1,453,051	-		DZA65_RS07015	0.35	+0.9
1,453,079	+		DZA65_RS07015	0.39	+0.1
1,453,223	+		DZA65_RS07015	0.60	-0.8
1,453,224	-		DZA65_RS07015	0.60	-0.0
1,453,253	+		DZA65_RS07015	0.64	+0.2
1,453,253	+		DZA65_RS07015	0.64	-0.8
1,453,253	+		DZA65_RS07015	0.64	+0.1
1,453,256	+		DZA65_RS07015	0.65	+0.8
1,453,256	+		DZA65_RS07015	0.65	+0.1
1,453,256	+		DZA65_RS07015	0.65	+1.8
1,453,256	+		DZA65_RS07015	0.65	-0.3
1,453,270	+		DZA65_RS07015	0.67	+1.8
1,453,270	+		DZA65_RS07015	0.67	-0.4
1,453,271	-		DZA65_RS07015	0.67	-0.7
1,453,271	-		DZA65_RS07015	0.67	+0.1
1,453,365	+				+1.0
1,453,365	+		DZA65_RS07015	0.80	-0.9
1,453,365	+		DZA65_RS07015	0.80	-0.2
1,453,365	+		DZA65_RS07015	0.80	+0.0
1,453,365	+		DZA65_RS07015	0.80	+1.3
1,453,365	+		DZA65_RS07015	0.80	+1.9
1,453,365	+		DZA65_RS07015	0.80	+0.3
1,453,365	+		DZA65_RS07015	0.80	+0.5
1,453,365	+		DZA65_RS07015	0.80	-1.1
1,453,365	+		DZA65_RS07015	0.80	+1.1
1,453,365	+		DZA65_RS07015	0.80	-0.3
1,453,365	+		DZA65_RS07015	0.80	-0.3
1,453,365	+		DZA65_RS07015	0.80	-0.0
1,453,366	-		DZA65_RS07015	0.81	+0.9
1,453,366	-		DZA65_RS07015	0.81	+0.3
1,453,366	-		DZA65_RS07015	0.81	+0.3
1,453,366	-		DZA65_RS07015	0.81	+1.5
1,453,366	-		DZA65_RS07015	0.81	-1.5
1,453,366	-				+1.9
1,453,366	-		DZA65_RS07015	0.81	+0.8
1,453,366	-		DZA65_RS07015	0.81	+0.1
1,453,366	-		DZA65_RS07015	0.81	+0.0
1,453,366	-		DZA65_RS07015	0.81	-0.8
1,453,366	-		DZA65_RS07015	0.81	+0.5
1,453,366	-		DZA65_RS07015	0.81	-0.8
1,453,366	-		DZA65_RS07015	0.81	-0.1
1,453,366	-		DZA65_RS07015	0.81	+2.0
1,453,366	-		DZA65_RS07015	0.81	-0.1
1,453,366	-		DZA65_RS07015	0.81	-0.7
1,453,367	+		DZA65_RS07015	0.81	+0.5
1,453,367	+		DZA65_RS07015	0.81	-0.3
1,453,367	+		DZA65_RS07015	0.81	+0.7
1,453,367	+		DZA65_RS07015	0.81	+1.9
1,453,368	-		DZA65_RS07015	0.81	-0.4
1,453,368	-		DZA65_RS07015	0.81	+0.2
1,453,368	-		DZA65_RS07015	0.81	+0.4
1,453,368	-		DZA65_RS07015	0.81	-0.1
1,453,516	+				-0.4
1,453,517	-				-0.2
1,453,736	+		DZA65_RS07020	0.22	-0.1
1,453,758	+		DZA65_RS07020	0.24	+0.3
1,453,759	-		DZA65_RS07020	0.25	-0.3
1,453,864	+		DZA65_RS07020	0.34	+0.1
1,453,865	-		DZA65_RS07020	0.35	-0.3
1,453,865	-		DZA65_RS07020	0.35	+0.9
1,453,980	+		DZA65_RS07020	0.45	-0.4
1,454,048	+		DZA65_RS07020	0.52	-0.7
1,454,048	+		DZA65_RS07020	0.52	+1.1
1,454,048	+		DZA65_RS07020	0.52	-0.7
1,454,048	+		DZA65_RS07020	0.52	+0.4
1,454,049	-		DZA65_RS07020	0.52	+1.0
1,454,049	-		DZA65_RS07020	0.52	+0.2
1,454,049	-		DZA65_RS07020	0.52	+0.7
1,454,049	-		DZA65_RS07020	0.52	-0.7
1,454,049	-		DZA65_RS07020	0.52	+0.7
1,454,077	-		DZA65_RS07020	0.55	+0.7
1,454,077	-		DZA65_RS07020	0.55	+0.5
1,454,198	-		DZA65_RS07020	0.66	+0.3
1,454,234	+		DZA65_RS07020	0.69	+0.1
1,454,235	-		DZA65_RS07020	0.69	+0.6
1,454,470	+				+1.1
1,454,470	+				-0.4
1,454,471	-				-0.7
1,454,471	-				-0.0