Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06770

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,404,225	-				-0.4
1,404,365	+				+0.2
1,404,365	+				-0.2
1,404,521	+				-0.3
1,404,521	+				-0.1
1,404,524	+				-0.0
1,404,524	+				-1.0
1,404,524	+				-0.5
1,404,524	+				-0.3
1,404,524	+				+0.5
1,404,524	+				+0.8
1,404,524	+				-0.5
1,404,524	+				-0.3
1,404,524	+				+1.7
1,404,524	+				-0.7
1,404,524	+				-0.7
1,404,525	-				+0.3
1,404,525	-				-0.3
1,404,525	-				-0.2
1,404,525	-				-0.4
1,404,525	-				-0.9
1,404,525	-				-1.1
1,404,525	-				+0.2
1,404,525	-				-2.5
1,404,525	-				-0.2
1,404,525	-				+0.3
1,404,569	+				+1.1
1,404,569	+				-0.2
1,404,569	+				-1.2
1,404,569	+				+0.7
1,404,570	-				+1.3
1,404,573	+				+0.3
1,404,573	+				-1.0
1,404,573	+				+0.5
1,404,573	+				+1.5
1,404,574	-				-0.3
1,404,574	-				-0.3
1,404,579	+				+0.8
1,404,605	+		DZA65_RS06765	0.12	-0.7
1,404,625	+		DZA65_RS06765	0.15	-0.6
1,404,625	+		DZA65_RS06765	0.15	-3.4
1,404,625	+		DZA65_RS06765	0.15	-0.6
1,404,625	+		DZA65_RS06765	0.15	+1.6
1,404,625	+		DZA65_RS06765	0.15	+0.0
1,404,625	+		DZA65_RS06765	0.15	+0.1
1,404,625	+		DZA65_RS06765	0.15	-2.3
1,404,625	+		DZA65_RS06765	0.15	-1.7
1,404,625	+		DZA65_RS06765	0.15	-0.2
1,404,626	-		DZA65_RS06765	0.15	-1.3
1,404,626	-				-0.1
1,404,626	-		DZA65_RS06765	0.15	-0.5
1,404,626	-		DZA65_RS06765	0.15	-1.3
1,404,626	-		DZA65_RS06765	0.15	+0.6
1,404,626	-		DZA65_RS06765	0.15	-2.4
1,404,626	-		DZA65_RS06765	0.15	-0.4
1,404,626	-		DZA65_RS06765	0.15	-0.0
1,404,626	-		DZA65_RS06765	0.15	-1.7
1,404,626	-		DZA65_RS06765	0.15	-0.4
1,404,629	+		DZA65_RS06765	0.16	+1.0
1,404,629	+		DZA65_RS06765	0.16	+0.8
1,404,629	+		DZA65_RS06765	0.16	+0.2
1,404,629	+		DZA65_RS06765	0.16	-0.9
1,404,629	+		DZA65_RS06765	0.16	-2.3
1,404,629	+		DZA65_RS06765	0.16	+1.9
1,404,629	+		DZA65_RS06765	0.16	-0.1
1,404,629	+		DZA65_RS06765	0.16	-0.3
1,404,629	+		DZA65_RS06765	0.16	+0.3
1,404,629	+		DZA65_RS06765	0.16	+1.5
1,404,629	+		DZA65_RS06765	0.16	+1.9
1,404,629	+		DZA65_RS06765	0.16	-1.8
1,404,629	+		DZA65_RS06765	0.16	-0.7
1,404,630	-		DZA65_RS06765	0.16	-0.3
1,404,630	-		DZA65_RS06765	0.16	-0.7
1,404,630	-		DZA65_RS06765	0.16	+0.9
1,404,630	-		DZA65_RS06765	0.16	+1.3
1,404,630	-		DZA65_RS06765	0.16	+0.2
1,404,630	-		DZA65_RS06765	0.16	-1.3
1,404,630	-		DZA65_RS06765	0.16	+0.1
1,404,630	-		DZA65_RS06765	0.16	+0.4
1,404,630	-		DZA65_RS06765	0.16	+1.5
1,404,630	-		DZA65_RS06765	0.16	+0.1
1,404,630	-		DZA65_RS06765	0.16	-0.1
1,404,630	-		DZA65_RS06765	0.16	-0.4
1,404,630	-		DZA65_RS06765	0.16	+0.3
1,404,630	-		DZA65_RS06765	0.16	+0.3
1,404,630	-		DZA65_RS06765	0.16	-0.7
1,404,630	-		DZA65_RS06765	0.16	-0.1
1,404,631	+		DZA65_RS06765	0.16	+0.3
1,404,631	+		DZA65_RS06765	0.16	+0.9
1,404,632	-		DZA65_RS06765	0.16	+1.4
1,404,651	+		DZA65_RS06765	0.20	+1.5
1,404,652	-		DZA65_RS06765	0.20	+0.6
1,404,652	-		DZA65_RS06765	0.20	-1.5
1,404,652	-		DZA65_RS06765	0.20	+0.5
1,404,652	-		DZA65_RS06765	0.20	+0.5
1,404,762	+		DZA65_RS06765	0.39	+1.6
1,404,883	+		DZA65_RS06765	0.60	+0.3
1,404,883	+		DZA65_RS06765	0.60	-0.0
1,404,884	-		DZA65_RS06765	0.60	-0.2
1,405,080	+				-0.8
1,405,083	+				-0.7
1,405,083	+				+0.8
1,405,083	+				-0.3
1,405,083	+				-1.7
1,405,084	-				+0.4
1,405,084	-				+1.5
1,405,084	-				-0.1
1,405,105	+				+0.4
1,405,105	+				-0.1
1,405,105	+				-2.0
1,405,105	+				+0.3
1,405,105	+				-1.3
1,405,105	+				-0.3
1,405,106	-				-0.7
1,405,106	-				+0.4
1,405,106	-				-0.6
1,405,106	-				+0.9
1,405,106	-				+0.3
1,405,106	-				-0.7
1,405,106	-				+1.5
1,405,115	+				+1.1
1,405,115	+				-0.7
1,405,115	+				-0.7
1,405,115	+				+0.8
1,405,115	+				+0.3
1,405,115	+				+0.3
1,405,116	-				-2.5
1,405,116	-				-0.7
1,405,116	-				+0.5
1,405,119	+				-1.1
1,405,119	+				+1.3
1,405,119	+				-0.5
1,405,120	-				-0.7
1,405,120	-				-2.0
1,405,120	-				+0.3
1,405,253	+				-0.5
1,405,253	+				-0.1
1,405,253	+				-1.7
1,405,254	-				-0.7
1,405,254	-				+1.3
1,405,254	-				-0.9
1,405,255	+				-0.3
1,405,255	+				+0.1
1,405,256	-				+0.3
1,405,256	-				+0.5
1,405,295	+				-0.6
1,405,296	-				-0.7
1,405,381	+		DZA65_RS06770	0.12	+1.2
1,405,418	-		DZA65_RS06770	0.14	-0.2
1,405,418	-		DZA65_RS06770	0.14	-0.1
1,405,418	-		DZA65_RS06770	0.14	+0.0
1,405,418	-		DZA65_RS06770	0.14	+1.2
1,405,660	+		DZA65_RS06770	0.26	-1.7
1,405,660	+		DZA65_RS06770	0.26	-0.9
1,405,661	-		DZA65_RS06770	0.26	-0.5
1,406,015	+		DZA65_RS06770	0.43	-1.1
1,406,015	+		DZA65_RS06770	0.43	-1.1
1,406,015	+		DZA65_RS06770	0.43	-1.3
1,406,016	-		DZA65_RS06770	0.43	+0.6
1,406,016	-		DZA65_RS06770	0.43	-0.5
1,406,333	+		DZA65_RS06770	0.58	-0.7
1,406,334	-		DZA65_RS06770	0.58	-0.2
1,406,334	-		DZA65_RS06770	0.58	+0.3
1,406,334	-		DZA65_RS06770	0.58	+1.5
1,406,511	+		DZA65_RS06770	0.67	-0.1
1,406,512	-		DZA65_RS06770	0.67	-0.4
1,406,512	-		DZA65_RS06770	0.67	-0.7
1,406,512	-		DZA65_RS06770	0.67	+0.3
1,406,512	-		DZA65_RS06770	0.67	-0.9
1,406,622	-		DZA65_RS06770	0.72	-0.3
1,406,991	+				+0.0
1,406,991	+				+2.3
1,406,992	-				+0.8
1,406,992	-				+0.8
1,406,992	-				+0.0
1,407,050	+				-0.9
1,407,074	+				+1.0
1,407,075	-				+1.4
1,407,076	+				-0.5
1,407,076	+				+0.6
1,407,076	+				-0.0
1,407,076	+				-0.6
1,407,076	+				+1.3
1,407,076	+				-1.0
1,407,076	+				-1.3
1,407,076	+				-0.5
1,407,076	+				+2.3
1,407,076	+				+0.1
1,407,076	+				+0.3
1,407,076	+				-0.3
1,407,076	+				-0.7
1,407,077	-				-0.9
1,407,077	-				-0.9
1,407,077	-				-0.2
1,407,077	-				-1.3
1,407,077	-				-0.0
1,407,077	-				-0.4
1,407,077	-				+1.3
1,407,077	-				-0.3
1,407,077	-				+0.3
1,407,130	-				+0.3
1,407,150	-				+1.9
1,407,230	+				-0.9
1,407,230	+				-1.0
1,407,230	+				+0.4
1,407,230	+				+0.5
1,407,230	+				+0.4
1,407,231	-				-0.3
1,407,231	-				+0.9
1,407,268	+				-0.7
1,407,269	-				+0.5
1,407,457	-		DZA65_RS06775	0.15	-0.2
1,407,457	-		DZA65_RS06775	0.15	-0.1
1,407,457	-		DZA65_RS06775	0.15	-1.3
1,407,457	-		DZA65_RS06775	0.15	+0.3
1,407,519	+		DZA65_RS06775	0.18	+2.1
1,407,525	+		DZA65_RS06775	0.19	-0.6
1,407,525	+		DZA65_RS06775	0.19	+0.6
1,407,526	-		DZA65_RS06775	0.19	-0.9
1,407,526	-		DZA65_RS06775	0.19	-0.2
1,407,526	-		DZA65_RS06775	0.19	-0.9
1,407,526	-		DZA65_RS06775	0.19	+1.7
1,407,687	+		DZA65_RS06775	0.28	-0.2
1,407,687	+		DZA65_RS06775	0.28	+0.5
1,407,688	-		DZA65_RS06775	0.28	-2.9
1,407,688	-		DZA65_RS06775	0.28	-0.7
1,407,688	-		DZA65_RS06775	0.28	+0.2
1,407,721	+		DZA65_RS06775	0.30	-0.6
1,407,756	+		DZA65_RS06775	0.32	+0.3
1,407,757	-		DZA65_RS06775	0.33	-0.3
1,407,771	-		DZA65_RS06775	0.33	-0.2
1,407,771	-		DZA65_RS06775	0.33	-1.9
1,407,771	-		DZA65_RS06775	0.33	-0.2
1,407,827	+		DZA65_RS06775	0.37	+0.5
1,407,912	-		DZA65_RS06775	0.42	-0.2
1,407,912	-		DZA65_RS06775	0.42	-1.5
1,407,999	+		DZA65_RS06775	0.47	+1.0
1,407,999	+		DZA65_RS06775	0.47	+0.0
1,407,999	+		DZA65_RS06775	0.47	+0.6
1,408,055	-		DZA65_RS06775	0.50	+0.3
1,408,093	+		DZA65_RS06775	0.52	+1.0
1,408,093	+		DZA65_RS06775	0.52	+0.5
1,408,094	-		DZA65_RS06775	0.52	+0.0
1,408,094	-		DZA65_RS06775	0.52	-0.5
1,408,094	-		DZA65_RS06775	0.52	-0.5