Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06600

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,371,337	-				+0.3
1,371,342	-				-2.0
1,371,342	-				-0.9
1,371,342	-				+1.0
1,371,461	-				+0.5
1,371,471	+				-0.7
1,371,471	+				-0.5
1,371,471	+				-0.4
1,371,471	+				-0.1
1,371,471	+				-1.5
1,371,471	+				-1.4
1,371,471	+				+1.4
1,371,471	+				-1.0
1,371,472	-				+1.3
1,371,472	-				+0.7
1,371,472	-				-0.4
1,371,472	-				-0.3
1,371,472	-				-1.5
1,371,472	-				-0.8
1,371,472	-				+0.7
1,371,472	-				-0.7
1,371,472	-				-0.3
1,371,472	-				+0.3
1,371,472	-				+0.3
1,371,472	-				-2.2
1,371,477	-				+0.8
1,371,477	-				-2.0
1,371,477	-				-0.7
1,371,542	+				+0.3
1,371,542	+				-0.7
1,371,542	+				-0.1
1,371,545	+				+0.9
1,371,604	+		DZA65_RS06595	0.17	-0.5
1,371,604	+		DZA65_RS06595	0.17	+0.0
1,371,605	-		DZA65_RS06595	0.17	-0.1
1,371,675	+		DZA65_RS06595	0.31	-0.0
1,371,676	-		DZA65_RS06595	0.31	+0.4
1,371,676	-		DZA65_RS06595	0.31	-0.5
1,371,676	-		DZA65_RS06595	0.31	-0.1
1,371,676	-		DZA65_RS06595	0.31	-0.1
1,371,676	-		DZA65_RS06595	0.31	+2.3
1,371,719	+		DZA65_RS06595	0.40	-1.0
1,371,719	+		DZA65_RS06595	0.40	-0.7
1,371,720	-		DZA65_RS06595	0.41	+0.3
1,371,720	-		DZA65_RS06595	0.41	-0.7
1,371,863	+		DZA65_RS06595	0.70	-0.7
1,371,863	+		DZA65_RS06595	0.70	-0.0
1,371,863	+		DZA65_RS06595	0.70	+0.3
1,371,933	-		DZA65_RS06595	0.85	+0.0
1,371,933	-		DZA65_RS06595	0.85	+0.1
1,371,933	-		DZA65_RS06595	0.85	+2.0
1,372,073	-				+0.3
1,372,073	-				+0.3
1,372,100	+				+0.6
1,372,178	+		DZA65_RS06600	0.15	-0.9
1,372,270	-		DZA65_RS06600	0.27	+0.3
1,372,344	+		DZA65_RS06600	0.38	-0.5
1,372,345	-		DZA65_RS06600	0.38	+0.3
1,372,478	+		DZA65_RS06600	0.56	-0.7
1,372,478	+		DZA65_RS06600	0.56	-0.1
1,372,479	-		DZA65_RS06600	0.56	-0.4
1,372,479	-		DZA65_RS06600	0.56	-0.2
1,372,482	+		DZA65_RS06600	0.57	+0.5
1,372,482	+		DZA65_RS06600	0.57	+0.3
1,372,483	-		DZA65_RS06600	0.57	-0.0
1,372,483	-		DZA65_RS06600	0.57	-0.4
1,372,668	+		DZA65_RS06600	0.82	-1.7
1,372,668	+		DZA65_RS06600	0.82	+1.0
1,372,668	+		DZA65_RS06600	0.82	-1.3
1,372,707	+		DZA65_RS06600	0.88	-1.0
1,372,772	+				-0.5
1,372,772	+				-0.8
1,372,773	-				+1.0
1,372,818	+				-0.7
1,372,819	-				+0.3
1,372,858	-				+0.3
1,372,886	+		DZA65_RS06605	0.13	-0.3
1,372,886	+		DZA65_RS06605	0.13	+0.3
1,372,887	-		DZA65_RS06605	0.13	-0.3
1,372,887	-		DZA65_RS06605	0.13	-0.3
1,372,953	+		DZA65_RS06605	0.23	-0.3
1,372,953	+		DZA65_RS06605	0.23	+0.6
1,372,953	+		DZA65_RS06605	0.23	-0.1
1,372,953	+		DZA65_RS06605	0.23	-1.3
1,372,953	+		DZA65_RS06605	0.23	+0.3
1,372,953	+		DZA65_RS06605	0.23	-0.7
1,372,954	-		DZA65_RS06605	0.23	-0.2
1,372,954	-				+0.7
1,372,954	-		DZA65_RS06605	0.23	+0.7
1,372,954	-		DZA65_RS06605	0.23	-0.1
1,372,967	-		DZA65_RS06605	0.25	-0.2
1,372,967	-		DZA65_RS06605	0.25	-0.2
1,373,104	+		DZA65_RS06605	0.46	+0.3
1,373,104	+		DZA65_RS06605	0.46	-0.8
1,373,104	+		DZA65_RS06605	0.46	+0.4
1,373,105	-		DZA65_RS06605	0.46	-0.6
1,373,136	+		DZA65_RS06605	0.50	+0.3
1,373,140	-		DZA65_RS06605	0.51	-1.5
1,373,165	+		DZA65_RS06605	0.55	-0.2
1,373,170	+		DZA65_RS06605	0.55	+0.9
1,373,170	+		DZA65_RS06605	0.55	+0.9
1,373,171	-		DZA65_RS06605	0.56	-0.1
1,373,244	+		DZA65_RS06605	0.66	-1.7
1,373,244	+		DZA65_RS06605	0.66	-0.1
1,373,244	+		DZA65_RS06605	0.66	-0.5
1,373,245	-		DZA65_RS06605	0.67	+0.3
1,373,245	-		DZA65_RS06605	0.67	-1.5
1,373,295	+		DZA65_RS06605	0.74	+1.3
1,373,295	+		DZA65_RS06605	0.74	-0.0
1,373,295	+		DZA65_RS06605	0.74	+2.0
1,373,295	+		DZA65_RS06605	0.74	-1.3
1,373,296	-		DZA65_RS06605	0.74	-0.4
1,373,296	-		DZA65_RS06605	0.74	+0.0
1,373,423	+				-0.4
1,373,423	+				-0.0
1,373,423	+				-2.9
1,373,424	-				-2.2
1,373,424	-				-0.5
1,373,424	-				+0.3
1,373,424	-				+0.9
1,373,428	-				+1.5
1,373,428	-				+0.0
1,373,466	+				-0.2
1,373,466	+				-0.3
1,373,466	+				+0.7
1,373,466	+				+0.1
1,373,473	-				+0.0
1,373,473	-				-1.6
1,373,473	-				-0.1
1,373,477	-				+0.1
1,373,510	+				+0.7
1,373,510	+				-2.9
1,373,510	+				-2.2
1,373,510	+				-0.9
1,373,511	-				-0.5
1,373,511	-				-0.1
1,373,511	-				+1.2
1,373,511	-				+0.3
1,373,560	+		DZA65_RS06610	0.11	+1.1
1,373,560	+		DZA65_RS06610	0.11	+0.6
1,373,560	+		DZA65_RS06610	0.11	-0.9
1,373,561	-		DZA65_RS06610	0.12	-1.0
1,373,561	-		DZA65_RS06610	0.12	-0.4
1,373,561	-		DZA65_RS06610	0.12	-0.7
1,373,561	-		DZA65_RS06610	0.12	+1.3
1,373,561	-		DZA65_RS06610	0.12	-0.0
1,373,590	+		DZA65_RS06610	0.16	+0.2
1,373,591	-		DZA65_RS06610	0.16	+0.4
1,373,605	+		DZA65_RS06610	0.18	+0.5
1,373,743	+		DZA65_RS06610	0.36	+0.5
1,373,743	+		DZA65_RS06610	0.36	+0.4
1,373,744	-		DZA65_RS06610	0.36	-0.7
1,373,744	-		DZA65_RS06610	0.36	-0.3
1,373,744	-		DZA65_RS06610	0.36	+0.3
1,373,749	+		DZA65_RS06610	0.37	-1.1
1,373,749	+		DZA65_RS06610	0.37	+0.2
1,373,749	+		DZA65_RS06610	0.37	+0.9
1,373,749	+		DZA65_RS06610	0.37	+0.4
1,373,750	-		DZA65_RS06610	0.37	-1.3
1,373,750	-		DZA65_RS06610	0.37	-0.1