Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06495

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,351,310	-		DZA65_RS06485	0.13	-0.1
1,351,466	-		DZA65_RS06485	0.36	+0.2
1,351,655	+		DZA65_RS06485	0.63	-0.3
1,351,655	+		DZA65_RS06485	0.63	+0.7
1,351,655	+		DZA65_RS06485	0.63	-0.3
1,351,655	+		DZA65_RS06485	0.63	+0.3
1,351,656	-				+1.3
1,351,656	-		DZA65_RS06485	0.63	+0.5
1,351,656	-		DZA65_RS06485	0.63	-0.5
1,351,656	-		DZA65_RS06485	0.63	-0.8
1,351,656	-		DZA65_RS06485	0.63	+0.7
1,351,656	-		DZA65_RS06485	0.63	+0.3
1,351,703	-		DZA65_RS06485	0.70	-0.9
1,351,825	+		DZA65_RS06485	0.88	-0.1
1,351,838	+				-0.4
1,351,838	+				+0.1
1,351,838	+				-0.9
1,351,838	+				-0.7
1,351,838	+				-0.9
1,351,838	+				+0.2
1,351,838	+				+0.5
1,351,838	+				+0.3
1,351,839	-				-0.4
1,351,839	-				+0.3
1,351,839	-				-0.3
1,351,839	-				-0.3
1,351,839	-				+0.3
1,351,839	-				+0.4
1,351,839	-				+0.3
1,351,839	-				-1.3
1,351,839	-				+0.1
1,351,839	-				-0.9
1,351,839	-				-2.3
1,351,920	+				-0.1
1,351,920	+				-1.0
1,351,920	+				+0.4
1,351,920	+				-1.7
1,351,920	+				-0.6
1,351,920	+				+0.4
1,351,920	+				+0.1
1,351,920	+				-0.1
1,351,920	+				+0.7
1,351,920	+				+0.1
1,351,920	+				-0.1
1,351,921	-				-1.3
1,351,921	-				-0.7
1,351,921	-				-0.2
1,351,921	-				-0.5
1,351,921	-				-0.4
1,351,921	-				-1.5
1,351,921	-				-0.1
1,351,921	-				-2.0
1,351,921	-				-1.2
1,351,924	+				-0.7
1,351,924	+				+1.0
1,351,924	+				+0.7
1,351,925	-				-1.0
1,351,925	-				+1.6
1,351,925	-				-1.0
1,351,925	-				-0.6
1,351,932	+				+1.3
1,351,932	+				-0.5
1,351,932	+				+0.9
1,351,933	-				+1.0
1,351,956	+				+0.8
1,351,956	+				-0.3
1,351,956	+				-0.2
1,351,956	+				-0.3
1,351,956	+				-0.2
1,351,956	+				+1.1
1,351,957	-				-0.5
1,351,957	-				+0.4
1,351,957	-				+0.9
1,352,065	-		DZA65_RS06490	0.25	-0.4
1,352,065	-		DZA65_RS06490	0.25	+0.2
1,352,065	-		DZA65_RS06490	0.25	-1.0
1,352,065	-		DZA65_RS06490	0.25	-0.7
1,352,065	-		DZA65_RS06490	0.25	-0.4
1,352,065	-		DZA65_RS06490	0.25	-0.8
1,352,065	-		DZA65_RS06490	0.25	+1.1
1,352,112	+		DZA65_RS06490	0.50	-1.5
1,352,112	+		DZA65_RS06490	0.50	-2.3
1,352,173	+		DZA65_RS06490	0.83	-0.2
1,352,173	+				-1.3
1,352,173	+		DZA65_RS06490	0.83	-1.1
1,352,174	-		DZA65_RS06490	0.83	+0.3
1,352,174	-		DZA65_RS06490	0.83	+1.3
1,352,174	-		DZA65_RS06490	0.83	-0.3
1,352,176	+		DZA65_RS06490	0.84	-1.5
1,352,205	+				-1.6
1,352,205	+				-0.2
1,352,205	+				+0.6
1,352,205	+				+0.7
1,352,206	-				+1.5
1,352,206	-				-0.6
1,352,218	+				-2.0
1,352,218	+				-0.7
1,352,218	+				-2.0
1,352,219	-				-0.3
1,352,219	-				+0.5
1,352,220	+				-0.7
1,352,220	+				+0.1
1,352,220	+				+0.5
1,352,220	+				-0.1
1,352,220	+				+0.5
1,352,220	+				-0.1
1,352,220	+				-0.5
1,352,220	+				+3.1
1,352,220	+				+0.4
1,352,220	+				-0.1
1,352,220	+				-0.9
1,352,220	+				-1.6
1,352,220	+				+0.3
1,352,220	+				-1.3
1,352,220	+				-0.3
1,352,221	-				+0.4
1,352,221	-				+0.9
1,352,221	-				+1.3
1,352,221	-				-0.2
1,352,221	-				-1.3
1,352,221	-				-0.3
1,352,221	-				-1.7
1,352,221	-				+0.0
1,352,221	-				-0.6
1,352,221	-				+1.4
1,352,221	-				-0.0
1,352,221	-				+0.8
1,352,221	-				-1.4
1,352,221	-				+0.1
1,352,221	-				+1.0
1,352,221	-				-0.3
1,352,221	-				-0.3
1,352,221	-				-0.5
1,352,221	-				+0.8
1,352,221	-				+0.1
1,352,226	+				-0.8
1,352,227	-				-0.2
1,352,245	+				+0.8
1,352,246	-				-1.7
1,352,246	-				-0.6
1,352,246	-				+0.9
1,352,246	-				-0.3
1,352,246	-				+0.7
1,352,249	-				+1.4
1,352,264	+				-0.1
1,352,265	-				-0.0
1,352,265	-				-0.3
1,352,283	+				+0.3
1,352,284	-				+0.2
1,352,286	+				+1.7
1,352,286	+				+0.6
1,352,286	+				+0.9
1,352,286	+				-0.1
1,352,286	+				+0.4
1,352,286	+				-0.4
1,352,286	+				+1.1
1,352,286	+				+0.5
1,352,286	+				-0.5
1,352,287	-				-0.3
1,352,287	-				+1.9
1,352,287	-				-0.9
1,352,287	-				+0.6
1,352,300	+				-1.3
1,352,300	+				-0.6
1,352,300	+				-1.3
1,352,300	+				-0.5
1,352,300	+				-0.9
1,352,300	+				-0.2
1,352,300	+				+0.5
1,352,301	-				-0.9
1,352,301	-				-2.5
1,352,301	-				+0.5
1,352,301	-				-0.8
1,352,301	-				-0.6
1,352,301	-				+0.6
1,352,301	-				+0.3
1,352,302	+				-0.6
1,352,302	+				-1.6
1,352,302	+				-1.0
1,352,302	+				-0.1
1,352,303	-				-0.9
1,352,303	-				-1.7
1,352,303	-				+0.3
1,352,303	-				-0.9
1,352,303	-				+1.3
1,352,303	-				-0.0
1,352,430	+		DZA65_RS06495	0.22	-0.8
1,352,430	+		DZA65_RS06495	0.22	-2.5
1,352,430	+		DZA65_RS06495	0.22	-0.0
1,352,431	-		DZA65_RS06495	0.22	+0.0
1,352,431	-		DZA65_RS06495	0.22	+1.0
1,352,431	-		DZA65_RS06495	0.22	+2.3
1,352,557	-		DZA65_RS06495	0.41	-1.0
1,352,610	+		DZA65_RS06495	0.49	-1.7
1,352,610	+		DZA65_RS06495	0.49	-1.8
1,352,610	+		DZA65_RS06495	0.49	-0.7
1,352,610	+		DZA65_RS06495	0.49	-0.0
1,352,611	-		DZA65_RS06495	0.49	-1.9
1,352,614	+		DZA65_RS06495	0.49	-2.7
1,352,615	-		DZA65_RS06495	0.49	-1.7
1,352,674	+		DZA65_RS06495	0.58	-1.3
1,352,674	+		DZA65_RS06495	0.58	-2.5
1,352,675	-		DZA65_RS06495	0.58	-0.5
1,352,804	-		DZA65_RS06495	0.78	+0.3
1,352,804	-		DZA65_RS06495	0.78	-0.7
1,352,857	+		DZA65_RS06495	0.86	+1.1
1,352,900	+				+0.5