Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05955

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05950 and DZA65_RS05955 are separated by 91 nucleotidesDZA65_RS05955 and DZA65_RS05960 are separated by 35 nucleotides DZA65_RS05950: DZA65_RS05950 - aldo/keto reductase, at 1,226,790 to 1,227,980 _RS05950 DZA65_RS05955: DZA65_RS05955 - SnoaL-like domain-containing protein, at 1,228,072 to 1,228,569 _RS05955 DZA65_RS05960: DZA65_RS05960 - MFS transporter, at 1,228,605 to 1,229,969 _RS05960 Position (kb) 1228 1229Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1227.074 kb on + strand, within DZA65_RS05950at 1227.074 kb on + strand, within DZA65_RS05950at 1227.111 kb on + strand, within DZA65_RS05950at 1227.112 kb on - strand, within DZA65_RS05950at 1227.132 kb on + strand, within DZA65_RS05950at 1227.132 kb on + strand, within DZA65_RS05950at 1227.132 kb on + strand, within DZA65_RS05950at 1227.133 kb on - strand, within DZA65_RS05950at 1227.139 kb on - strand, within DZA65_RS05950at 1227.145 kb on + strand, within DZA65_RS05950at 1227.146 kb on - strand, within DZA65_RS05950at 1227.146 kb on - strand, within DZA65_RS05950at 1227.176 kb on + strand, within DZA65_RS05950at 1227.176 kb on + strand, within DZA65_RS05950at 1227.176 kb on + strand, within DZA65_RS05950at 1227.177 kb on - strand, within DZA65_RS05950at 1227.179 kb on + strand, within DZA65_RS05950at 1227.179 kb on + strandat 1227.180 kb on - strand, within DZA65_RS05950at 1227.195 kb on + strand, within DZA65_RS05950at 1227.195 kb on + strandat 1227.195 kb on + strand, within DZA65_RS05950at 1227.195 kb on + strand, within DZA65_RS05950at 1227.195 kb on + strand, within DZA65_RS05950at 1227.195 kb on + strand, within DZA65_RS05950at 1227.195 kb on + strand, within DZA65_RS05950at 1227.195 kb on + strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.196 kb on - strand, within DZA65_RS05950at 1227.197 kb on + strand, within DZA65_RS05950at 1227.197 kb on + strand, within DZA65_RS05950at 1227.198 kb on - strandat 1227.198 kb on - strand, within DZA65_RS05950at 1227.200 kb on + strand, within DZA65_RS05950at 1227.201 kb on - strand, within DZA65_RS05950at 1227.288 kb on + strand, within DZA65_RS05950at 1227.288 kb on + strand, within DZA65_RS05950at 1227.288 kb on + strand, within DZA65_RS05950at 1227.288 kb on + strand, within DZA65_RS05950at 1227.289 kb on - strand, within DZA65_RS05950at 1227.289 kb on - strand, within DZA65_RS05950at 1227.294 kb on + strand, within DZA65_RS05950at 1227.294 kb on + strand, within DZA65_RS05950at 1227.294 kb on + strand, within DZA65_RS05950at 1227.294 kb on + strandat 1227.294 kb on + strand, within DZA65_RS05950at 1227.295 kb on - strand, within DZA65_RS05950at 1227.336 kb on - strand, within DZA65_RS05950at 1227.375 kb on + strand, within DZA65_RS05950at 1227.569 kb on + strand, within DZA65_RS05950at 1227.711 kb on + strand, within DZA65_RS05950at 1227.800 kb on + strand, within DZA65_RS05950at 1227.811 kb on + strand, within DZA65_RS05950at 1227.812 kb on - strand, within DZA65_RS05950at 1227.812 kb on - strand, within DZA65_RS05950at 1227.812 kb on - strand, within DZA65_RS05950at 1227.838 kb on + strand, within DZA65_RS05950at 1227.839 kb on - strand, within DZA65_RS05950at 1227.877 kb on + strandat 1227.877 kb on + strandat 1227.877 kb on + strandat 1227.877 kb on + strandat 1227.877 kb on + strandat 1227.877 kb on + strandat 1227.878 kb on - strandat 1227.878 kb on - strandat 1227.878 kb on - strandat 1227.978 kb on + strandat 1227.978 kb on + strandat 1227.979 kb on - strandat 1228.009 kb on + strandat 1228.009 kb on + strandat 1228.009 kb on + strandat 1228.009 kb on + strandat 1228.009 kb on + strandat 1228.010 kb on - strandat 1228.010 kb on - strandat 1228.010 kb on - strandat 1228.014 kb on + strandat 1228.056 kb on + strandat 1228.056 kb on + strandat 1228.079 kb on + strandat 1228.079 kb on + strandat 1228.079 kb on + strandat 1228.080 kb on - strandat 1228.080 kb on - strandat 1228.097 kb on + strandat 1228.097 kb on + strandat 1228.232 kb on - strand, within DZA65_RS05955at 1228.233 kb on + strand, within DZA65_RS05955at 1228.233 kb on + strand, within DZA65_RS05955at 1228.234 kb on - strand, within DZA65_RS05955at 1228.244 kb on + strand, within DZA65_RS05955at 1228.245 kb on - strand, within DZA65_RS05955at 1228.245 kb on - strand, within DZA65_RS05955at 1228.245 kb on - strand, within DZA65_RS05955at 1228.276 kb on + strand, within DZA65_RS05955at 1228.276 kb on + strand, within DZA65_RS05955at 1228.276 kb on + strand, within DZA65_RS05955at 1228.276 kb on + strand, within DZA65_RS05955at 1228.276 kb on + strand, within DZA65_RS05955at 1228.276 kb on + strand, within DZA65_RS05955at 1228.277 kb on - strand, within DZA65_RS05955at 1228.302 kb on + strandat 1228.302 kb on + strand, within DZA65_RS05955at 1228.302 kb on + strand, within DZA65_RS05955at 1228.302 kb on + strand, within DZA65_RS05955at 1228.302 kb on + strand, within DZA65_RS05955at 1228.303 kb on - strand, within DZA65_RS05955at 1228.303 kb on - strand, within DZA65_RS05955at 1228.355 kb on + strandat 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.355 kb on + strand, within DZA65_RS05955at 1228.356 kb on - strand, within DZA65_RS05955at 1228.356 kb on - strand, within DZA65_RS05955at 1228.356 kb on - strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.386 kb on + strand, within DZA65_RS05955at 1228.387 kb on - strand, within DZA65_RS05955at 1228.387 kb on - strand, within DZA65_RS05955at 1228.387 kb on - strand, within DZA65_RS05955at 1228.387 kb on - strand, within DZA65_RS05955at 1228.387 kb on - strand, within DZA65_RS05955at 1228.387 kb on - strand, within DZA65_RS05955at 1228.420 kb on + strand, within DZA65_RS05955at 1228.421 kb on - strand, within DZA65_RS05955at 1228.497 kb on + strand, within DZA65_RS05955at 1228.497 kb on + strand, within DZA65_RS05955at 1228.502 kb on + strand, within DZA65_RS05955at 1228.502 kb on + strand, within DZA65_RS05955at 1228.502 kb on + strand, within DZA65_RS05955at 1228.503 kb on - strand, within DZA65_RS05955at 1228.503 kb on - strand, within DZA65_RS05955at 1228.503 kb on - strand, within DZA65_RS05955at 1228.503 kb on - strand, within DZA65_RS05955at 1228.532 kb on + strandat 1228.552 kb on - strandat 1228.552 kb on - strandat 1228.742 kb on + strand, within DZA65_RS05960at 1228.770 kb on - strand, within DZA65_RS05960at 1228.939 kb on + strand, within DZA65_RS05960at 1228.940 kb on - strand, within DZA65_RS05960at 1228.940 kb on - strand, within DZA65_RS05960at 1228.963 kb on + strand, within DZA65_RS05960at 1228.964 kb on - strand, within DZA65_RS05960at 1229.048 kb on + strand, within DZA65_RS05960at 1229.048 kb on + strand, within DZA65_RS05960at 1229.049 kb on - strand, within DZA65_RS05960at 1229.049 kb on - strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.052 kb on + strand, within DZA65_RS05960at 1229.053 kb on - strand, within DZA65_RS05960at 1229.053 kb on - strand, within DZA65_RS05960at 1229.126 kb on + strand, within DZA65_RS05960at 1229.126 kb on + strand, within DZA65_RS05960at 1229.126 kb on + strand, within DZA65_RS05960at 1229.130 kb on + strand, within DZA65_RS05960at 1229.130 kb on + strand, within DZA65_RS05960at 1229.162 kb on - strand, within DZA65_RS05960at 1229.162 kb on - strand, within DZA65_RS05960at 1229.212 kb on + strand, within DZA65_RS05960at 1229.266 kb on - strand, within DZA65_RS05960at 1229.426 kb on + strand, within DZA65_RS05960at 1229.511 kb on + strand, within DZA65_RS05960at 1229.511 kb on + strand, within DZA65_RS05960at 1229.512 kb on - strand, within DZA65_RS05960at 1229.531 kb on + strand, within DZA65_RS05960at 1229.532 kb on - strand, within DZA65_RS05960at 1229.532 kb on - strand, within DZA65_RS05960

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,227,074 + DZA65_RS05950 0.24 +0.9
1,227,074 + DZA65_RS05950 0.24 -1.7
1,227,111 + DZA65_RS05950 0.27 -1.5
1,227,112 - DZA65_RS05950 0.27 -0.0
1,227,132 + DZA65_RS05950 0.29 +1.1
1,227,132 + DZA65_RS05950 0.29 +1.1
1,227,132 + DZA65_RS05950 0.29 +0.3
1,227,133 - DZA65_RS05950 0.29 -0.0
1,227,139 - DZA65_RS05950 0.29 -0.4
1,227,145 + DZA65_RS05950 0.30 -0.0
1,227,146 - DZA65_RS05950 0.30 -1.7
1,227,146 - DZA65_RS05950 0.30 +0.2
1,227,176 + DZA65_RS05950 0.32 +0.9
1,227,176 + DZA65_RS05950 0.32 +0.9
1,227,176 + DZA65_RS05950 0.32 +0.2
1,227,177 - DZA65_RS05950 0.32 -0.5
1,227,179 + DZA65_RS05950 0.33 -0.3
1,227,179 + +1.6
1,227,180 - DZA65_RS05950 0.33 +0.7
1,227,195 + DZA65_RS05950 0.34 +0.5
1,227,195 + +2.3
1,227,195 + DZA65_RS05950 0.34 -2.0
1,227,195 + DZA65_RS05950 0.34 +0.8
1,227,195 + DZA65_RS05950 0.34 -0.5
1,227,195 + DZA65_RS05950 0.34 -0.4
1,227,195 + DZA65_RS05950 0.34 -0.4
1,227,195 + DZA65_RS05950 0.34 +0.0
1,227,196 - DZA65_RS05950 0.34 -0.0
1,227,196 - DZA65_RS05950 0.34 +0.2
1,227,196 - DZA65_RS05950 0.34 -0.0
1,227,196 - DZA65_RS05950 0.34 -0.6
1,227,196 - DZA65_RS05950 0.34 +1.3
1,227,196 - DZA65_RS05950 0.34 +0.3
1,227,196 - DZA65_RS05950 0.34 -0.7
1,227,196 - DZA65_RS05950 0.34 -0.1
1,227,196 - DZA65_RS05950 0.34 +0.5
1,227,196 - DZA65_RS05950 0.34 -0.0
1,227,197 + DZA65_RS05950 0.34 -0.7
1,227,197 + DZA65_RS05950 0.34 -0.8
1,227,198 - +0.9
1,227,198 - DZA65_RS05950 0.34 -1.0
1,227,200 + DZA65_RS05950 0.34 +1.3
1,227,201 - DZA65_RS05950 0.35 -0.2
1,227,288 + DZA65_RS05950 0.42 +0.9
1,227,288 + DZA65_RS05950 0.42 +1.1
1,227,288 + DZA65_RS05950 0.42 +1.4
1,227,288 + DZA65_RS05950 0.42 +0.3
1,227,289 - DZA65_RS05950 0.42 -0.4
1,227,289 - DZA65_RS05950 0.42 +1.6
1,227,294 + DZA65_RS05950 0.42 +1.1
1,227,294 + DZA65_RS05950 0.42 +0.6
1,227,294 + DZA65_RS05950 0.42 -0.1
1,227,294 + +1.3
1,227,294 + DZA65_RS05950 0.42 -1.3
1,227,295 - DZA65_RS05950 0.42 -0.9
1,227,336 - DZA65_RS05950 0.46 -2.0
1,227,375 + DZA65_RS05950 0.49 -0.7
1,227,569 + DZA65_RS05950 0.65 +0.1
1,227,711 + DZA65_RS05950 0.77 -0.9
1,227,800 + DZA65_RS05950 0.85 -1.9
1,227,811 + DZA65_RS05950 0.86 +0.7
1,227,812 - DZA65_RS05950 0.86 -1.1
1,227,812 - DZA65_RS05950 0.86 +0.3
1,227,812 - DZA65_RS05950 0.86 -0.4
1,227,838 + DZA65_RS05950 0.88 +0.4
1,227,839 - DZA65_RS05950 0.88 -2.3
1,227,877 + -1.0
1,227,877 + +0.6
1,227,877 + -1.3
1,227,877 + +0.1
1,227,877 + -0.7
1,227,877 + +0.8
1,227,878 - -0.1
1,227,878 - +0.6
1,227,878 - -1.0
1,227,978 + +0.9
1,227,978 + +0.3
1,227,979 - +0.1
1,228,009 + +0.3
1,228,009 + -0.4
1,228,009 + -1.1
1,228,009 + +0.6
1,228,009 + -1.7
1,228,010 - +1.1
1,228,010 - -1.7
1,228,010 - -0.0
1,228,014 + -1.7
1,228,056 + +0.1
1,228,056 + -0.3
1,228,079 + -0.3
1,228,079 + +0.1
1,228,079 + -0.4
1,228,080 - -0.2
1,228,080 - -0.4
1,228,097 + -1.0
1,228,097 + -2.9
1,228,232 - DZA65_RS05955 0.32 +1.0
1,228,233 + DZA65_RS05955 0.32 -0.4
1,228,233 + DZA65_RS05955 0.32 -0.2
1,228,234 - DZA65_RS05955 0.33 +0.1
1,228,244 + DZA65_RS05955 0.35 -0.3
1,228,245 - DZA65_RS05955 0.35 -0.2
1,228,245 - DZA65_RS05955 0.35 +0.7
1,228,245 - DZA65_RS05955 0.35 -0.3
1,228,276 + DZA65_RS05955 0.41 -0.0
1,228,276 + DZA65_RS05955 0.41 -0.0
1,228,276 + DZA65_RS05955 0.41 +0.8
1,228,276 + DZA65_RS05955 0.41 -0.5
1,228,276 + DZA65_RS05955 0.41 -1.7
1,228,276 + DZA65_RS05955 0.41 +0.1
1,228,277 - DZA65_RS05955 0.41 -1.1
1,228,302 + -0.7
1,228,302 + DZA65_RS05955 0.46 +0.3
1,228,302 + DZA65_RS05955 0.46 -0.5
1,228,302 + DZA65_RS05955 0.46 +1.3
1,228,302 + DZA65_RS05955 0.46 -0.5
1,228,303 - DZA65_RS05955 0.46 -1.6
1,228,303 - DZA65_RS05955 0.46 -0.3
1,228,355 + -1.7
1,228,355 + DZA65_RS05955 0.57 +0.3
1,228,355 + DZA65_RS05955 0.57 +0.3
1,228,355 + DZA65_RS05955 0.57 +0.3
1,228,355 + DZA65_RS05955 0.57 +0.0
1,228,355 + DZA65_RS05955 0.57 -2.7
1,228,355 + DZA65_RS05955 0.57 -0.7
1,228,355 + DZA65_RS05955 0.57 -0.7
1,228,355 + DZA65_RS05955 0.57 -0.5
1,228,356 - DZA65_RS05955 0.57 -1.3
1,228,356 - DZA65_RS05955 0.57 -0.9
1,228,356 - DZA65_RS05955 0.57 -0.2
1,228,386 + DZA65_RS05955 0.63 +0.0
1,228,386 + DZA65_RS05955 0.63 -0.1
1,228,386 + DZA65_RS05955 0.63 -1.3
1,228,386 + DZA65_RS05955 0.63 +0.2
1,228,386 + DZA65_RS05955 0.63 -3.5
1,228,386 + DZA65_RS05955 0.63 -0.7
1,228,386 + DZA65_RS05955 0.63 -1.3
1,228,386 + DZA65_RS05955 0.63 +0.5
1,228,387 - DZA65_RS05955 0.63 +0.1
1,228,387 - DZA65_RS05955 0.63 +0.2
1,228,387 - DZA65_RS05955 0.63 -0.3
1,228,387 - DZA65_RS05955 0.63 -1.3
1,228,387 - DZA65_RS05955 0.63 -3.0
1,228,387 - DZA65_RS05955 0.63 -0.8
1,228,420 + DZA65_RS05955 0.70 -1.0
1,228,421 - DZA65_RS05955 0.70 -0.9
1,228,497 + DZA65_RS05955 0.85 -0.3
1,228,497 + DZA65_RS05955 0.85 -0.6
1,228,502 + DZA65_RS05955 0.86 +0.7
1,228,502 + DZA65_RS05955 0.86 -0.9
1,228,502 + DZA65_RS05955 0.86 +0.3
1,228,503 - DZA65_RS05955 0.87 -0.9
1,228,503 - DZA65_RS05955 0.87 -0.8
1,228,503 - DZA65_RS05955 0.87 +1.4
1,228,503 - DZA65_RS05955 0.87 +0.2
1,228,532 + -0.3
1,228,552 - -0.0
1,228,552 - +0.7
1,228,742 + DZA65_RS05960 0.10 -0.7
1,228,770 - DZA65_RS05960 0.12 -0.2
1,228,939 + DZA65_RS05960 0.24 -1.7
1,228,940 - DZA65_RS05960 0.25 +0.6
1,228,940 - DZA65_RS05960 0.25 +0.5
1,228,963 + DZA65_RS05960 0.26 +1.1
1,228,964 - DZA65_RS05960 0.26 +0.0
1,229,048 + DZA65_RS05960 0.32 +1.0
1,229,048 + DZA65_RS05960 0.32 -2.5
1,229,049 - DZA65_RS05960 0.33 -0.1
1,229,049 - DZA65_RS05960 0.33 +1.1
1,229,052 + DZA65_RS05960 0.33 -2.3
1,229,052 + DZA65_RS05960 0.33 +2.6
1,229,052 + DZA65_RS05960 0.33 -0.7
1,229,052 + DZA65_RS05960 0.33 +0.0
1,229,052 + DZA65_RS05960 0.33 -0.8
1,229,052 + DZA65_RS05960 0.33 -0.3
1,229,052 + DZA65_RS05960 0.33 -0.2
1,229,053 - DZA65_RS05960 0.33 -0.4
1,229,053 - DZA65_RS05960 0.33 -0.7
1,229,126 + DZA65_RS05960 0.38 -0.3
1,229,126 + DZA65_RS05960 0.38 -2.0
1,229,126 + DZA65_RS05960 0.38 +0.1
1,229,130 + DZA65_RS05960 0.38 -2.0
1,229,130 + DZA65_RS05960 0.38 -0.4
1,229,162 - DZA65_RS05960 0.41 +0.4
1,229,162 - DZA65_RS05960 0.41 -0.3
1,229,212 + DZA65_RS05960 0.44 -1.3
1,229,266 - DZA65_RS05960 0.48 +2.9
1,229,426 + DZA65_RS05960 0.60 -1.6
1,229,511 + DZA65_RS05960 0.66 +0.3
1,229,511 + DZA65_RS05960 0.66 +0.6
1,229,512 - DZA65_RS05960 0.66 +0.0
1,229,531 + DZA65_RS05960 0.68 +0.2
1,229,532 - DZA65_RS05960 0.68 -0.4
1,229,532 - DZA65_RS05960 0.68 -2.5

Or see this region's nucleotide sequence