Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05840

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,202,960	+		DZA65_RS05835	0.37	+1.8
1,202,960	+		DZA65_RS05835	0.37	-0.5
1,202,960	+		DZA65_RS05835	0.37	-0.7
1,202,960	+				+0.9
1,202,960	+		DZA65_RS05835	0.37	-0.7
1,202,960	+		DZA65_RS05835	0.37	+0.3
1,202,961	-		DZA65_RS05835	0.37	-1.1
1,202,961	-		DZA65_RS05835	0.37	-1.1
1,202,961	-		DZA65_RS05835	0.37	-0.5
1,202,964	+		DZA65_RS05835	0.37	-1.7
1,202,964	+		DZA65_RS05835	0.37	+0.3
1,202,964	+		DZA65_RS05835	0.37	-0.4
1,202,964	+		DZA65_RS05835	0.37	+0.2
1,202,964	+		DZA65_RS05835	0.37	-0.5
1,202,964	+		DZA65_RS05835	0.37	-1.7
1,202,964	+		DZA65_RS05835	0.37	-1.5
1,202,964	+		DZA65_RS05835	0.37	-0.9
1,202,964	+				+1.5
1,202,965	-		DZA65_RS05835	0.37	-0.6
1,202,965	-		DZA65_RS05835	0.37	-0.7
1,202,965	-		DZA65_RS05835	0.37	-1.3
1,202,965	-		DZA65_RS05835	0.37	-0.3
1,202,965	-		DZA65_RS05835	0.37	+0.2
1,202,965	-		DZA65_RS05835	0.37	-0.3
1,202,965	-		DZA65_RS05835	0.37	+1.3
1,203,012	+		DZA65_RS05835	0.41	+0.3
1,203,013	-		DZA65_RS05835	0.41	-1.1
1,203,013	-		DZA65_RS05835	0.41	+0.3
1,203,183	+		DZA65_RS05835	0.54	-1.7
1,203,196	+		DZA65_RS05835	0.55	-1.0
1,203,196	+		DZA65_RS05835	0.55	-0.0
1,203,196	+		DZA65_RS05835	0.55	-0.0
1,203,196	+		DZA65_RS05835	0.55	-0.1
1,203,196	+		DZA65_RS05835	0.55	-0.2
1,203,196	+		DZA65_RS05835	0.55	-1.7
1,203,196	+		DZA65_RS05835	0.55	-0.3
1,203,196	+		DZA65_RS05835	0.55	-3.1
1,203,196	+		DZA65_RS05835	0.55	-1.1
1,203,196	+		DZA65_RS05835	0.55	+0.1
1,203,196	+		DZA65_RS05835	0.55	-0.3
1,203,197	-		DZA65_RS05835	0.55	-0.2
1,203,197	-		DZA65_RS05835	0.55	-0.1
1,203,197	-		DZA65_RS05835	0.55	-1.3
1,203,197	-		DZA65_RS05835	0.55	-0.1
1,203,197	-		DZA65_RS05835	0.55	-1.0
1,203,230	-		DZA65_RS05835	0.57	-0.7
1,203,245	+				+3.3
1,203,245	+		DZA65_RS05835	0.58	-0.1
1,203,246	-		DZA65_RS05835	0.58	-1.7
1,203,285	+		DZA65_RS05835	0.61	+2.0
1,203,285	+		DZA65_RS05835	0.61	+0.5
1,203,285	+		DZA65_RS05835	0.61	-1.1
1,203,286	-		DZA65_RS05835	0.61	+0.5
1,203,286	-		DZA65_RS05835	0.61	-1.3
1,203,286	-		DZA65_RS05835	0.61	+0.3
1,203,496	+		DZA65_RS05835	0.77	-0.0
1,203,496	+		DZA65_RS05835	0.77	-1.6
1,203,505	+		DZA65_RS05835	0.77	-0.9
1,203,505	+		DZA65_RS05835	0.77	-1.7
1,203,505	+		DZA65_RS05835	0.77	-1.3
1,203,505	+		DZA65_RS05835	0.77	-0.5
1,203,505	+		DZA65_RS05835	0.77	+0.5
1,203,505	+		DZA65_RS05835	0.77	-0.5
1,203,505	+		DZA65_RS05835	0.77	+0.3
1,203,506	-		DZA65_RS05835	0.77	-1.3
1,203,506	-		DZA65_RS05835	0.77	-0.9
1,203,506	-				+0.3
1,203,506	-		DZA65_RS05835	0.77	-1.2
1,203,506	-		DZA65_RS05835	0.77	-0.5
1,203,506	-		DZA65_RS05835	0.77	+0.6
1,203,506	-		DZA65_RS05835	0.77	+1.1
1,203,506	-		DZA65_RS05835	0.77	-0.4
1,203,506	-		DZA65_RS05835	0.77	-0.7
1,203,506	-		DZA65_RS05835	0.77	+0.3
1,203,506	-		DZA65_RS05835	0.77	-0.5
1,203,506	-		DZA65_RS05835	0.77	-2.3
1,203,506	-		DZA65_RS05835	0.77	-0.7
1,203,506	-		DZA65_RS05835	0.77	-2.3
1,203,506	-		DZA65_RS05835	0.77	-0.8
1,203,506	-				+2.3
1,203,686	+				-0.5
1,203,687	-				-0.1
1,203,687	-				+0.9
1,203,687	-				+0.2
1,203,687	-				-1.2
1,203,699	+				+1.1
1,203,700	-				+0.9
1,203,718	+				-0.9
1,203,719	-				-0.3
1,203,719	-				-1.3
1,203,719	-				-0.3
1,203,719	-				-1.0
1,203,719	-				+0.3
1,203,745	+				-0.5
1,203,745	+				-1.6
1,203,746	-				-0.1
1,203,850	+				-1.1
1,203,851	-				+0.3
1,203,851	-				+1.8
1,203,905	+				+2.1
1,203,906	-				-0.8
1,203,933	-				-2.3
1,204,039	-		DZA65_RS05840	0.22	-1.0
1,204,039	-		DZA65_RS05840	0.22	-1.3
1,204,039	-		DZA65_RS05840	0.22	-0.7
1,204,059	+		DZA65_RS05840	0.26	-0.7
1,204,060	-		DZA65_RS05840	0.26	-0.7
1,204,167	-				+1.1
1,204,248	+		DZA65_RS05840	0.57	-0.5
1,204,507	-				+0.7
1,204,510	+				+0.3
1,204,510	+				-1.3
1,204,510	+				-0.1
1,204,510	+				-2.3
1,204,511	-				-0.4
1,204,518	+				+0.4
1,204,519	-				-1.0
1,204,523	-				-0.4
1,204,523	-				-0.4
1,204,545	+				+0.9
1,204,545	+				-1.3
1,204,558	-				-0.7
1,204,561	+				-0.7
1,204,561	+				+0.3
1,204,561	+				-0.1
1,204,561	+				+0.3
1,204,561	+				+0.3
1,204,562	-				-1.5
1,204,562	-				+0.3
1,204,562	-				-0.8
1,204,562	-				-0.5
1,204,562	-				+0.1
1,204,562	-				+0.9
1,204,563	+				+0.1
1,204,563	+				-0.0
1,204,564	-				+1.5
1,204,564	-				-0.1
1,204,564	-				+0.3
1,204,564	-				-2.5
1,204,564	-				-0.1
1,204,568	-				+0.3
1,204,585	-				+0.4
1,204,606	+				+0.3
1,204,606	+				-1.3
1,204,612	-				+2.5
1,204,638	-				-0.1
1,204,687	-				+0.4
1,204,741	+				+1.2
1,204,741	+				-0.6
1,204,742	-				-0.3
1,204,749	+		DZA65_RS05845	0.11	-0.1
1,204,750	-		DZA65_RS05845	0.11	+0.1
1,204,750	-		DZA65_RS05845	0.11	-3.0
1,204,750	-		DZA65_RS05845	0.11	+0.3
1,204,750	-		DZA65_RS05845	0.11	-0.5
1,204,750	-		DZA65_RS05845	0.11	+0.5
1,204,763	+		DZA65_RS05845	0.13	+0.8
1,204,763	+		DZA65_RS05845	0.13	-2.3
1,204,764	-		DZA65_RS05845	0.13	-0.3
1,204,764	-		DZA65_RS05845	0.13	+0.5
1,204,764	-		DZA65_RS05845	0.13	-0.0
1,204,867	+		DZA65_RS05845	0.30	-0.0
1,204,885	-		DZA65_RS05845	0.33	-1.3
1,204,885	-		DZA65_RS05845	0.33	+0.1
1,204,914	+		DZA65_RS05845	0.38	+0.5
1,204,915	-		DZA65_RS05845	0.38	+0.3
1,204,917	+		DZA65_RS05845	0.38	-0.9
1,204,917	+		DZA65_RS05845	0.38	-1.5
1,204,918	-		DZA65_RS05845	0.38	+1.6
1,204,918	-		DZA65_RS05845	0.38	-1.1
1,204,918	-		DZA65_RS05845	0.38	+0.0
1,204,918	-		DZA65_RS05845	0.38	-0.6
1,204,918	-		DZA65_RS05845	0.38	+0.6
1,204,921	+		DZA65_RS05845	0.39	+0.3
1,204,921	+		DZA65_RS05845	0.39	+1.1
1,204,921	+		DZA65_RS05845	0.39	+0.8
1,204,921	+		DZA65_RS05845	0.39	-1.3
1,204,921	+		DZA65_RS05845	0.39	-0.2
1,204,922	-		DZA65_RS05845	0.39	+0.8
1,204,922	-		DZA65_RS05845	0.39	+0.3
1,204,922	-		DZA65_RS05845	0.39	-0.3
1,204,922	-		DZA65_RS05845	0.39	+0.3
1,204,922	-		DZA65_RS05845	0.39	+0.7
1,204,922	-		DZA65_RS05845	0.39	+0.1
1,205,068	+		DZA65_RS05845	0.63	-0.7
1,205,069	-		DZA65_RS05845	0.63	-0.9
1,205,069	-		DZA65_RS05845	0.63	+0.3
1,205,191	-		DZA65_RS05845	0.83	+0.9
1,205,327	-				-1.1
1,205,342	+				-2.9
1,205,342	+				-1.0
1,205,342	+				+0.2
1,205,342	+				-0.2
1,205,343	-				+0.8
1,205,343	-				-0.8
1,205,343	-				+0.7
1,205,343	-				+0.2
1,205,343	-				+1.1
1,205,343	-				-0.3
1,205,344	+				+0.1
1,205,344	+				+0.8
1,205,344	+				-2.0
1,205,344	+				+0.3
1,205,344	+				+0.0
1,205,345	-				-1.3
1,205,371	+				+0.3
1,205,372	-				-0.3
1,205,372	-				-2.0
1,205,372	-				-0.4
1,205,400	+				-0.4
1,205,400	+				-0.8
1,205,401	-				+0.3
1,205,405	+				+0.5
1,205,405	+				-0.4
1,205,439	+				-0.2
1,205,439	+				+0.9
1,205,440	-				-2.5
1,205,440	-				-1.2