Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05575

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,147,720	+		DZA65_RS05570	0.72	-1.7
1,147,938	+		DZA65_RS05570	0.80	-0.9
1,147,938	+		DZA65_RS05570	0.80	+0.3
1,147,938	+		DZA65_RS05570	0.80	+0.2
1,147,939	-				+1.9
1,147,952	+		DZA65_RS05570	0.81	-0.3
1,147,952	+		DZA65_RS05570	0.81	+0.3
1,147,953	-		DZA65_RS05570	0.81	-0.1
1,147,953	-		DZA65_RS05570	0.81	-2.3
1,148,073	+		DZA65_RS05570	0.85	-0.1
1,148,212	+				-0.4
1,148,212	+				-1.2
1,148,212	+				-1.7
1,148,212	+				-0.4
1,148,252	+				+0.6
1,148,253	-				+0.3
1,148,292	-				+0.0
1,148,292	-				-0.8
1,148,327	-				+0.2
1,148,338	+				-0.6
1,148,338	+				-1.5
1,148,339	-				-0.3
1,148,339	-				+1.7
1,148,339	-				+1.1
1,148,339	-				-0.4
1,148,351	+				+0.7
1,148,356	+				+0.1
1,148,357	-				-1.2
1,148,399	-				+1.1
1,148,441	+				-0.5
1,148,441	+				-0.4
1,148,441	+				-0.3
1,148,441	+				-0.2
1,148,442	-				-1.4
1,148,442	-				-0.1
1,148,486	-				+0.6
1,148,501	+				-2.0
1,148,507	+				+0.8
1,148,507	+				+0.2
1,148,508	-				-0.9
1,148,550	+				+1.9
1,148,550	+				+0.0
1,148,551	-				-2.3
1,148,551	-				+1.3
1,148,551	-				+0.3
1,148,557	-				-0.1
1,148,569	-				-1.4
1,148,573	+				+0.6
1,148,573	+				+1.0
1,148,574	-				-0.2
1,148,581	+				-0.7
1,148,581	+				+0.3
1,148,581	+				+0.9
1,148,581	+				+0.2
1,148,581	+				-0.3
1,148,581	+				-1.7
1,148,581	+				-0.1
1,148,581	+				+0.6
1,148,581	+				-0.7
1,148,581	+				-0.9
1,148,581	+				+0.5
1,148,581	+				-0.9
1,148,581	+				-2.0
1,148,581	+				+0.0
1,148,581	+				+0.5
1,148,581	+				-0.1
1,148,582	-				-1.3
1,148,582	-				+0.3
1,148,582	-				-1.3
1,148,582	-				-0.2
1,148,582	-				+0.5
1,148,582	-				-0.3
1,148,582	-				-0.7
1,148,582	-				+1.6
1,148,582	-				-1.7
1,148,582	-				+0.3
1,148,582	-				-0.6
1,148,584	-				+0.2
1,148,584	-				+0.2
1,148,589	+				+1.3
1,148,589	+				-0.7
1,148,590	-				-0.3
1,148,593	+				-1.3
1,148,593	+				-0.2
1,148,593	+				-0.4
1,148,593	+				-0.0
1,148,593	+				-1.0
1,148,593	+				-0.3
1,148,593	+				+0.9
1,148,593	+				+0.3
1,148,593	+				+0.3
1,148,593	+				+0.7
1,148,593	+				+0.6
1,148,594	-				+1.1
1,148,594	-				-0.3
1,148,594	-				-0.3
1,148,594	-				+1.3
1,148,594	-				-0.4
1,148,594	-				+0.7
1,148,594	-				-0.6
1,148,594	-				-0.2
1,148,594	-				-0.4
1,148,605	+				+0.1
1,148,605	+				-0.8
1,148,605	+				-0.1
1,148,605	+				-0.3
1,148,606	-				-0.1
1,148,621	-				-0.8
1,148,639	+				-0.1
1,148,651	+				+0.6
1,148,652	-				+0.0
1,148,723	+		DZA65_RS05575	0.15	+0.3
1,148,723	+		DZA65_RS05575	0.15	-0.6
1,148,724	-		DZA65_RS05575	0.15	+0.2
1,148,745	-		DZA65_RS05575	0.20	-0.7
1,148,752	+		DZA65_RS05575	0.21	+0.5
1,148,752	+		DZA65_RS05575	0.21	+0.2
1,148,752	+		DZA65_RS05575	0.21	-0.5
1,148,752	+		DZA65_RS05575	0.21	+0.1
1,148,759	+		DZA65_RS05575	0.23	-1.3
1,148,759	+		DZA65_RS05575	0.23	+0.3
1,148,759	+		DZA65_RS05575	0.23	+0.5
1,148,759	+		DZA65_RS05575	0.23	-1.1
1,148,760	-		DZA65_RS05575	0.23	-0.8
1,148,760	-		DZA65_RS05575	0.23	-1.5
1,148,760	-		DZA65_RS05575	0.23	-2.0
1,148,760	-		DZA65_RS05575	0.23	-2.1
1,148,794	-		DZA65_RS05575	0.30	-1.6
1,148,794	-		DZA65_RS05575	0.30	-0.0
1,148,794	-		DZA65_RS05575	0.30	+1.6
1,148,794	-		DZA65_RS05575	0.30	-0.7
1,148,794	-		DZA65_RS05575	0.30	-0.2
1,148,880	-		DZA65_RS05575	0.49	-0.4
1,148,893	+		DZA65_RS05575	0.52	-0.4
1,148,893	+		DZA65_RS05575	0.52	-0.3
1,148,893	+		DZA65_RS05575	0.52	-0.8
1,148,893	+		DZA65_RS05575	0.52	-0.7
1,148,893	+		DZA65_RS05575	0.52	+1.1
1,148,945	+		DZA65_RS05575	0.63	+0.7
1,148,945	+		DZA65_RS05575	0.63	+0.0
1,148,945	+		DZA65_RS05575	0.63	-1.3
1,148,945	+		DZA65_RS05575	0.63	+0.4
1,148,945	+		DZA65_RS05575	0.63	+0.0
1,148,946	-		DZA65_RS05575	0.63	+0.0
1,148,946	-		DZA65_RS05575	0.63	-2.3
1,148,946	-		DZA65_RS05575	0.63	-1.3
1,148,979	-		DZA65_RS05575	0.70	+1.1
1,148,979	-		DZA65_RS05575	0.70	-0.7
1,148,979	-		DZA65_RS05575	0.70	-0.9
1,148,979	-		DZA65_RS05575	0.70	-0.2
1,149,006	+		DZA65_RS05575	0.76	-0.1
1,149,006	+		DZA65_RS05575	0.76	+0.7
1,149,006	+		DZA65_RS05575	0.76	-0.9
1,149,006	+		DZA65_RS05575	0.76	-1.8
1,149,006	+		DZA65_RS05575	0.76	+0.4
1,149,006	+		DZA65_RS05575	0.76	-0.5
1,149,007	-		DZA65_RS05575	0.76	+1.6
1,149,007	-		DZA65_RS05575	0.76	+0.5
1,149,007	-		DZA65_RS05575	0.76	-0.1
1,149,007	-		DZA65_RS05575	0.76	+0.2
1,149,017	+		DZA65_RS05575	0.78	-0.7
1,149,018	-		DZA65_RS05575	0.79	+0.0
1,149,018	-		DZA65_RS05575	0.79	+0.3
1,149,022	+		DZA65_RS05575	0.79	-1.9
1,149,023	-		DZA65_RS05575	0.80	-2.3
1,149,031	+		DZA65_RS05575	0.81	-0.2
1,149,044	-		DZA65_RS05575	0.84	-0.4
1,149,044	-		DZA65_RS05575	0.84	-0.4
1,149,078	+				-0.5
1,149,078	+				-0.5
1,149,078	+				-1.3
1,149,078	+				-0.1
1,149,078	+				+0.7
1,149,078	+				+1.2
1,149,078	+				+0.7
1,149,078	+				-0.8
1,149,078	+				-0.2
1,149,079	-				-1.0
1,149,079	-				-1.0
1,149,079	-				-0.9
1,149,079	-				-0.4
1,149,079	-				-0.6
1,149,079	-				-0.7
1,149,079	-				+0.6
1,149,079	-				-1.0
1,149,118	-				-0.4
1,149,118	-				-0.5
1,149,118	-				-0.1
1,149,118	-				-1.5
1,149,118	-				+0.3
1,149,118	-				+0.3
1,149,118	-				+0.9
1,149,118	-				-0.3
1,149,118	-				-3.0
1,149,118	-				-1.3
1,149,118	-				+0.6
1,149,118	-				-1.3
1,149,122	-				+0.9
1,149,122	-				+0.0
1,149,122	-				-2.0
1,149,122	-				-0.7
1,149,122	-				-0.0
1,149,122	-				+0.5
1,149,138	-				-0.5
1,149,173	-				+0.6
1,149,228	-				+2.3
1,149,228	-				+0.2
1,149,228	-				+0.0
1,149,228	-				-0.3
1,149,228	-				-2.7
1,149,228	-				+1.5
1,149,228	-				-2.3
1,149,228	-				-0.8
1,149,228	-				+0.9
1,149,228	-				+0.3