Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,084,981	+		DZA65_RS05265	0.71	+0.0
1,084,982	-		DZA65_RS05265	0.71	-1.9
1,084,982	-		DZA65_RS05265	0.71	-0.3
1,085,046	+		DZA65_RS05265	0.73	-2.1
1,085,046	+		DZA65_RS05265	0.73	+1.7
1,085,046	+		DZA65_RS05265	0.73	-0.9
1,085,046	+		DZA65_RS05265	0.73	-0.2
1,085,047	-		DZA65_RS05265	0.73	+0.1
1,085,047	-		DZA65_RS05265	0.73	+0.6
1,085,047	-		DZA65_RS05265	0.73	+0.6
1,085,047	-		DZA65_RS05265	0.73	+0.2
1,085,095	+		DZA65_RS05265	0.75	-1.2
1,085,140	+		DZA65_RS05265	0.76	-2.5
1,085,140	+		DZA65_RS05265	0.76	-3.4
1,085,140	+		DZA65_RS05265	0.76	+1.5
1,085,140	+		DZA65_RS05265	0.76	+0.9
1,085,140	+		DZA65_RS05265	0.76	+0.0
1,085,140	+		DZA65_RS05265	0.76	-1.2
1,085,140	+		DZA65_RS05265	0.76	-0.5
1,085,141	-		DZA65_RS05265	0.76	-0.5
1,085,141	-		DZA65_RS05265	0.76	-1.0
1,085,141	-		DZA65_RS05265	0.76	+1.3
1,085,141	-		DZA65_RS05265	0.76	+1.1
1,085,141	-		DZA65_RS05265	0.76	+0.6
1,085,141	-		DZA65_RS05265	0.76	-1.2
1,085,141	-		DZA65_RS05265	0.76	-0.7
1,085,287	+		DZA65_RS05265	0.81	+0.6
1,085,287	+		DZA65_RS05265	0.81	-0.2
1,085,287	+		DZA65_RS05265	0.81	-1.0
1,085,288	-		DZA65_RS05265	0.81	-0.1
1,085,335	+		DZA65_RS05265	0.82	-0.8
1,085,335	+		DZA65_RS05265	0.82	+0.6
1,085,335	+		DZA65_RS05265	0.82	+0.9
1,085,335	+		DZA65_RS05265	0.82	+1.3
1,085,336	-		DZA65_RS05265	0.83	+0.8
1,085,336	-		DZA65_RS05265	0.83	-2.2
1,085,336	-		DZA65_RS05265	0.83	+0.8
1,085,336	-		DZA65_RS05265	0.83	-0.5
1,085,341	+		DZA65_RS05265	0.83	-2.2
1,085,341	+		DZA65_RS05265	0.83	-1.2
1,085,341	+		DZA65_RS05265	0.83	-0.0
1,085,341	+		DZA65_RS05265	0.83	+0.5
1,085,341	+		DZA65_RS05265	0.83	-2.2
1,085,341	+		DZA65_RS05265	0.83	-0.5
1,085,341	+		DZA65_RS05265	0.83	+0.3
1,085,341	+		DZA65_RS05265	0.83	+0.8
1,085,342	-		DZA65_RS05265	0.83	-1.2
1,085,342	-		DZA65_RS05265	0.83	+1.3
1,085,342	-		DZA65_RS05265	0.83	-0.5
1,085,342	-		DZA65_RS05265	0.83	-0.9
1,085,342	-		DZA65_RS05265	0.83	-0.1
1,085,342	-		DZA65_RS05265	0.83	+1.2
1,085,342	-		DZA65_RS05265	0.83	+0.0
1,085,342	-		DZA65_RS05265	0.83	+0.0
1,085,342	-		DZA65_RS05265	0.83	+2.1
1,085,342	-		DZA65_RS05265	0.83	-2.5
1,085,464	-		DZA65_RS05265	0.87	-0.9
1,085,464	-		DZA65_RS05265	0.87	-1.2
1,085,466	+		DZA65_RS05265	0.87	-1.2
1,085,466	+		DZA65_RS05265	0.87	-0.4
1,085,467	-		DZA65_RS05265	0.87	+0.5
1,085,486	-		DZA65_RS05265	0.87	-1.0
1,085,486	-		DZA65_RS05265	0.87	-0.7
1,085,612	+				+0.3
1,085,612	+				+0.5
1,085,612	+				+0.1
1,085,613	-				-1.2
1,085,613	-				+1.3
1,085,672	+				+0.2
1,085,754	+				+0.4
1,085,755	-				+0.9
1,085,757	+				-2.7
1,085,802	+				-1.2
1,085,802	+				+2.3
1,085,803	-				+0.0
1,085,877	+				+0.6
1,085,878	-				+0.8
1,085,893	+				-0.1
1,085,893	+				+0.8
1,085,894	-				+0.4
1,085,978	+				+1.3
1,086,050	+				-0.1
1,086,172	+		DZA65_RS05270	0.20	-0.7
1,086,172	+		DZA65_RS05270	0.20	+0.1
1,086,172	+		DZA65_RS05270	0.20	+0.2
1,086,172	+		DZA65_RS05270	0.20	+0.3
1,086,173	-		DZA65_RS05270	0.20	-0.5
1,086,173	-		DZA65_RS05270	0.20	+0.3
1,086,233	+		DZA65_RS05270	0.26	-0.7
1,086,233	+		DZA65_RS05270	0.26	-0.1
1,086,234	-		DZA65_RS05270	0.26	+0.1
1,086,234	-		DZA65_RS05270	0.26	+1.9
1,086,268	+		DZA65_RS05270	0.29	+0.7
1,086,268	+		DZA65_RS05270	0.29	-0.1
1,086,268	+		DZA65_RS05270	0.29	+1.5
1,086,268	+		DZA65_RS05270	0.29	+0.8
1,086,304	+		DZA65_RS05270	0.33	+1.4
1,086,304	+		DZA65_RS05270	0.33	-0.5
1,086,304	+		DZA65_RS05270	0.33	-0.2
1,086,378	-		DZA65_RS05270	0.40	+0.1
1,086,378	-		DZA65_RS05270	0.40	-0.4
1,086,378	-				+0.3
1,086,380	-		DZA65_RS05270	0.40	-0.8
1,086,478	+		DZA65_RS05270	0.50	+2.2
1,086,478	+		DZA65_RS05270	0.50	-1.7
1,086,478	+		DZA65_RS05270	0.50	+0.4
1,086,478	+		DZA65_RS05270	0.50	-1.0
1,086,479	-		DZA65_RS05270	0.50	+0.9
1,086,479	-		DZA65_RS05270	0.50	-1.6
1,086,479	-		DZA65_RS05270	0.50	-0.7
1,086,489	-				-1.7
1,086,559	+		DZA65_RS05270	0.57	-0.2
1,086,559	+		DZA65_RS05270	0.57	-0.7
1,086,559	+		DZA65_RS05270	0.57	-0.3
1,086,559	+		DZA65_RS05270	0.57	-1.2
1,086,560	-		DZA65_RS05270	0.58	-2.2
1,086,560	-		DZA65_RS05270	0.58	+1.2
1,086,565	+		DZA65_RS05270	0.58	+0.3
1,086,565	+		DZA65_RS05270	0.58	+0.9
1,086,566	-		DZA65_RS05270	0.58	+1.9
1,086,584	+		DZA65_RS05270	0.60	+1.1
1,086,584	+		DZA65_RS05270	0.60	+0.8
1,086,585	-		DZA65_RS05270	0.60	+0.9
1,086,585	-		DZA65_RS05270	0.60	-1.2
1,086,616	+		DZA65_RS05270	0.63	-0.3
1,086,617	-		DZA65_RS05270	0.63	+0.4
1,086,617	-		DZA65_RS05270	0.63	+0.3
1,086,617	-		DZA65_RS05270	0.63	-0.1
1,086,628	+		DZA65_RS05270	0.64	+0.1
1,086,629	-		DZA65_RS05270	0.64	+0.6
1,086,799	+		DZA65_RS05270	0.80	-0.0
1,086,799	+		DZA65_RS05270	0.80	+0.1
1,086,799	+				-0.7
1,086,799	+		DZA65_RS05270	0.80	-0.7
1,086,799	+		DZA65_RS05270	0.80	-0.4
1,086,799	+		DZA65_RS05270	0.80	+1.3
1,086,799	+		DZA65_RS05270	0.80	+0.8
1,086,800	-		DZA65_RS05270	0.81	+1.1
1,086,800	-		DZA65_RS05270	0.81	+1.6
1,086,800	-		DZA65_RS05270	0.81	+0.3
1,086,800	-		DZA65_RS05270	0.81	-1.1
1,086,800	-		DZA65_RS05270	0.81	+1.1
1,086,800	-		DZA65_RS05270	0.81	-0.4
1,086,800	-		DZA65_RS05270	0.81	+0.3
1,086,800	-		DZA65_RS05270	0.81	+0.5
1,086,857	+		DZA65_RS05270	0.86	+0.5
1,086,857	+		DZA65_RS05270	0.86	-0.2
1,086,857	+		DZA65_RS05270	0.86	+0.7
1,086,858	-		DZA65_RS05270	0.86	+0.9
1,086,959	+				-0.1
1,086,959	+				+1.2
1,086,959	+				-2.0
1,086,960	-				-0.2
1,086,960	-				-0.5
1,086,960	-				-0.9
1,086,986	+				-0.5
1,086,987	-				+1.3
1,086,987	-				+0.9
1,086,994	+				-0.7
1,086,994	+				+0.1
1,086,994	+				-0.5
1,086,995	-				+0.3
1,086,995	-				-0.4
1,086,995	-				+0.6
1,086,995	-				+0.1
1,087,016	+				-0.3
1,087,016	+				+0.9
1,087,060	+				-0.5
1,087,060	+				+0.3
1,087,061	-				+0.8
1,087,062	+				-0.7
1,087,062	+				+1.3
1,087,063	-				-0.7
1,087,217	+				-0.4
1,087,217	+				+0.6
1,087,218	-				-0.1
1,087,218	-				+1.5
1,087,218	-				+0.0
1,087,218	-				+0.7
1,087,218	-				+0.6
1,087,228	+				+0.3
1,087,228	+				-1.0
1,087,229	-				-2.7
1,087,229	-				-1.1
1,087,281	+		DZA65_RS05275	0.30	+0.1
1,087,281	+		DZA65_RS05275	0.30	+0.1
1,087,282	-		DZA65_RS05275	0.30	+1.0
1,087,282	-		DZA65_RS05275	0.30	-1.1
1,087,283	+		DZA65_RS05275	0.31	+0.3
1,087,283	+		DZA65_RS05275	0.31	-1.5
1,087,283	+		DZA65_RS05275	0.31	+1.1
1,087,283	+		DZA65_RS05275	0.31	+1.9
1,087,284	-		DZA65_RS05275	0.31	+0.3
1,087,284	-		DZA65_RS05275	0.31	+0.3
1,087,284	-		DZA65_RS05275	0.31	-0.3
1,087,364	+		DZA65_RS05275	0.68	-0.2
1,087,364	+		DZA65_RS05275	0.68	-0.4
1,087,364	+		DZA65_RS05275	0.68	+0.6
1,087,364	+		DZA65_RS05275	0.68	-1.3
1,087,365	-		DZA65_RS05275	0.68	+0.5
1,087,365	-		DZA65_RS05275	0.68	+0.6
1,087,365	-		DZA65_RS05275	0.68	-0.1
1,087,365	-		DZA65_RS05275	0.68	-1.0
1,087,365	-		DZA65_RS05275	0.68	-1.7
1,087,365	-		DZA65_RS05275	0.68	+1.3
1,087,365	-		DZA65_RS05275	0.68	+0.1
1,087,365	-		DZA65_RS05275	0.68	-1.2
1,087,365	-		DZA65_RS05275	0.68	-0.1
1,087,365	-				-0.7
1,087,365	-		DZA65_RS05275	0.68	-0.6
1,087,365	-		DZA65_RS05275	0.68	-0.3
1,087,365	-		DZA65_RS05275	0.68	-0.1
1,087,443	+				-0.2
1,087,443	+				-0.9
1,087,450	+				-1.7
1,087,451	-				-0.8
1,087,455	-				+2.0
1,087,483	+				+0.1
1,087,515	+				-0.7
1,087,515	+				-0.7
1,087,538	-				-0.1
1,087,565	-				+0.3
1,087,664	+				+1.9
1,087,664	+				+0.3
1,087,664	+		DZA65_RS05280	0.11	+0.0
1,087,665	-		DZA65_RS05280	0.11	+0.3
1,087,665	-		DZA65_RS05280	0.11	-1.1
1,087,665	-		DZA65_RS05280	0.11	-0.4
1,087,665	-		DZA65_RS05280	0.11	+1.0
1,087,665	-		DZA65_RS05280	0.11	-2.5
1,087,670	+		DZA65_RS05280	0.11	+0.4
1,087,670	+		DZA65_RS05280	0.11	-0.7
1,087,670	+		DZA65_RS05280	0.11	-0.2
1,087,671	-		DZA65_RS05280	0.12	-0.8
1,087,671	-		DZA65_RS05280	0.12	-0.1
1,087,671	-		DZA65_RS05280	0.12	+0.7
1,087,671	-		DZA65_RS05280	0.12	+1.8
1,087,671	-		DZA65_RS05280	0.12	+0.0
1,087,839	+		DZA65_RS05280	0.35	-2.0
1,087,839	+				-1.7
1,087,839	+		DZA65_RS05280	0.35	-0.1
1,087,840	-		DZA65_RS05280	0.35	+0.1
1,087,840	-		DZA65_RS05280	0.35	-1.2
1,087,840	-		DZA65_RS05280	0.35	-1.7
1,087,840	-		DZA65_RS05280	0.35	-0.1
1,087,872	+		DZA65_RS05280	0.40	-0.4
1,087,911	+		DZA65_RS05280	0.45	+1.5
1,087,911	+		DZA65_RS05280	0.45	+0.3
1,087,911	+		DZA65_RS05280	0.45	+0.4
1,087,953	+		DZA65_RS05280	0.51	+0.6
1,087,953	+		DZA65_RS05280	0.51	+0.9
1,087,953	+		DZA65_RS05280	0.51	+0.5
1,087,953	+		DZA65_RS05280	0.51	+0.5
1,087,953	+		DZA65_RS05280	0.51	-0.7
1,087,953	+		DZA65_RS05280	0.51	-1.8
1,087,953	+		DZA65_RS05280	0.51	-0.7
1,087,954	-		DZA65_RS05280	0.51	+1.1
1,087,954	-		DZA65_RS05280	0.51	+0.9
1,087,954	-		DZA65_RS05280	0.51	+0.1
1,087,954	-		DZA65_RS05280	0.51	+0.5