Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05100

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,048,900	+				-0.3
1,048,901	-				+0.1
1,048,901	-				-0.1
1,048,912	+				+1.4
1,048,912	+				-1.3
1,048,912	+				-0.3
1,048,912	+				-1.5
1,048,913	-				+0.3
1,048,913	-				-1.2
1,048,914	+				+0.9
1,048,914	+				+0.3
1,048,914	+				-0.4
1,048,914	+				+0.3
1,048,914	+				+0.3
1,048,914	+				-0.2
1,048,914	+				+0.6
1,048,914	+				+0.3
1,048,914	+				-1.2
1,048,914	+				-0.2
1,048,914	+				-0.4
1,048,914	+				+0.0
1,048,915	-				-1.2
1,048,915	-				+0.3
1,048,915	-				+1.3
1,048,915	-				-0.7
1,048,915	-				-0.7
1,048,915	-				+0.0
1,048,915	-				+1.8
1,048,915	-				-0.4
1,048,915	-				-0.1
1,048,918	+				+0.5
1,048,918	+				-0.1
1,048,918	+				-2.0
1,048,918	+				+0.4
1,048,919	-				-0.8
1,048,919	-				-0.2
1,048,919	-				-0.7
1,048,919	-				-0.1
1,048,936	+				-1.0
1,048,937	-				-0.0
1,048,951	+				-0.5
1,048,952	-				+0.3
1,048,990	+				-0.1
1,049,007	+				-1.8
1,049,007	+				-2.2
1,049,011	+				-1.5
1,049,011	+				+0.3
1,049,011	+				+0.0
1,049,011	+				+0.8
1,049,011	+				+0.8
1,049,012	-				+0.3
1,049,012	-				-0.8
1,049,012	-				+0.3
1,049,012	-				+0.8
1,049,012	-				+0.3
1,049,012	-				-0.4
1,049,012	-				+0.3
1,049,012	-				+0.0
1,049,015	+				+1.0
1,049,015	+				+0.8
1,049,015	+				-0.8
1,049,015	+				+0.1
1,049,015	+				+0.5
1,049,015	+				-1.8
1,049,015	+				-0.8
1,049,015	+				-0.7
1,049,015	+				-0.1
1,049,015	+				+2.5
1,049,016	-				-0.7
1,049,016	-				-0.2
1,049,020	+				+0.1
1,049,020	+				-0.4
1,049,025	-				-1.6
1,049,025	-				+0.2
1,049,040	+				-0.7
1,049,041	-				+0.9
1,049,041	-				+0.3
1,049,044	+				-2.0
1,049,044	+				-0.7
1,049,044	+				-0.1
1,049,045	-				+0.3
1,049,061	+				-0.7
1,049,061	+				-0.7
1,049,062	-				-1.8
1,049,062	-				-0.7
1,049,065	+				-1.0
1,049,065	+				+1.3
1,049,065	+				-1.0
1,049,065	+				+0.5
1,049,065	+				-0.2
1,049,065	+				-0.1
1,049,065	+				+0.3
1,049,066	-				-0.9
1,049,066	-				-0.7
1,049,066	-				-0.9
1,049,066	-				-1.4
1,049,066	-				-1.2
1,049,066	-				-0.7
1,049,066	-				-0.6
1,049,066	-				-1.6
1,049,068	+				-0.9
1,049,068	+				+0.3
1,049,068	+				+0.6
1,049,068	+				-0.7
1,049,069	-				-0.9
1,049,069	-				+0.1
1,049,069	-				-0.6
1,049,092	+				+0.5
1,049,092	+				-1.2
1,049,093	-				-0.1
1,049,093	-				+0.8
1,049,093	-				-2.2
1,049,187	+		DZA65_RS05090	0.39	+2.8
1,049,187	+		DZA65_RS05090	0.39	-2.2
1,049,187	+		DZA65_RS05090	0.39	-0.4
1,049,187	+		DZA65_RS05090	0.39	-1.5
1,049,188	-		DZA65_RS05090	0.40	-0.4
1,049,378	+				-0.3
1,049,378	+				+0.3
1,049,379	-				+0.8
1,049,379	-				+0.8
1,049,382	+				-0.4
1,049,382	+				+0.7
1,049,383	-				+0.3
1,049,383	-				+1.3
1,049,383	-				-0.8
1,049,403	+				-2.5
1,049,403	+				+0.5
1,049,404	-				-1.2
1,049,404	-				-1.7
1,049,417	+				-1.0
1,049,417	+				-0.6
1,049,418	-				+0.4
1,049,418	-				+0.3
1,049,450	+				+0.9
1,049,451	-				+0.7
1,049,451	-				-0.7
1,049,453	-				-0.4
1,049,458	+				-0.3
1,049,458	+				+0.6
1,049,458	+				-0.2
1,049,468	+				+0.8
1,049,468	+				+0.5
1,049,468	+				+0.5
1,049,472	+				+1.1
1,049,478	+				+0.7
1,049,479	-				-0.9
1,049,479	-				-1.1
1,049,491	+				+0.9
1,049,491	+				+2.7
1,049,492	-				+0.9
1,049,492	-				+0.1
1,049,498	+				+0.8
1,049,498	+				+0.6
1,049,499	-				-1.1
1,049,499	-				-0.4
1,049,529	+		DZA65_RS05095	0.11	+0.0
1,049,530	-		DZA65_RS05095	0.11	+0.1
1,049,567	+		DZA65_RS05095	0.38	-0.2
1,049,567	+		DZA65_RS05095	0.38	+0.0
1,049,568	-		DZA65_RS05095	0.39	+1.2
1,049,580	+		DZA65_RS05095	0.47	-1.1
1,049,580	+		DZA65_RS05095	0.47	+0.5
1,049,580	+		DZA65_RS05095	0.47	+0.3
1,049,580	+		DZA65_RS05095	0.47	-1.4
1,049,580	+		DZA65_RS05095	0.47	-0.1
1,049,581	-		DZA65_RS05095	0.48	-0.7
1,049,582	+		DZA65_RS05095	0.49	+0.8
1,049,582	+		DZA65_RS05095	0.49	+0.9
1,049,582	+		DZA65_RS05095	0.49	-0.8
1,049,582	+		DZA65_RS05095	0.49	-0.1
1,049,582	+		DZA65_RS05095	0.49	-0.8
1,049,583	-		DZA65_RS05095	0.49	-0.1
1,049,583	-		DZA65_RS05095	0.49	-0.1
1,049,583	-		DZA65_RS05095	0.49	+0.3
1,049,583	-		DZA65_RS05095	0.49	-1.7
1,049,672	-				+0.3
1,049,672	-				-1.7
1,049,672	-				-0.2
1,049,691	+				-0.0
1,049,692	-				-0.5
1,049,703	+				+0.6
1,049,703	+				-0.9
1,049,703	+				+0.1
1,049,703	+				-0.0
1,049,704	-				+0.9
1,049,704	-				+0.8
1,049,704	-				+0.7
1,049,704	-				-0.2
1,049,704	-				-0.3
1,049,704	-				+2.1
1,049,722	+				-0.5
1,049,723	-				-2.5
1,049,776	+				+0.7
1,049,779	+				+0.3
1,049,780	-				-0.9
1,049,780	-				+1.9
1,049,780	-				-0.1
1,049,785	-				+0.3
1,049,797	+				-0.1
1,049,798	-				+0.3
1,049,801	+				-1.7
1,049,802	-				-0.0
1,049,802	-				+1.1
1,049,806	+				+0.9
1,049,806	+				-0.8
1,049,807	-				-0.2
1,049,831	-				+0.3
1,049,864	+				-0.6
1,049,864	+				-2.0
1,049,864	+				-1.1
1,049,864	+				-0.7
1,049,864	+				-0.2
1,049,864	+				-2.0
1,049,865	-				+1.0
1,049,923	+				-1.1
1,049,924	-				+0.1
1,049,993	-				+1.1
1,050,009	+				-0.2
1,050,009	+				-0.2
1,050,151	+				+1.7
1,050,152	-				-0.2
1,050,152	-				+0.5
1,050,232	+		DZA65_RS05100	0.11	-0.9
1,050,299	+		DZA65_RS05100	0.12	-2.5
1,050,299	+		DZA65_RS05100	0.12	+0.0
1,050,300	-		DZA65_RS05100	0.12	-0.1
1,050,301	+		DZA65_RS05100	0.12	-0.8
1,050,301	+		DZA65_RS05100	0.12	-1.4
1,050,302	-		DZA65_RS05100	0.12	-1.6
1,050,302	-		DZA65_RS05100	0.12	+1.0
1,050,302	-		DZA65_RS05100	0.12	+0.1
1,050,316	+		DZA65_RS05100	0.13	+0.9
1,050,316	+		DZA65_RS05100	0.13	-0.7
1,050,316	+		DZA65_RS05100	0.13	-0.0
1,050,348	+		DZA65_RS05100	0.14	-0.5
1,050,349	-		DZA65_RS05100	0.14	+1.5
1,050,400	+		DZA65_RS05100	0.15	+2.1
1,050,400	+		DZA65_RS05100	0.15	+0.1
1,050,400	+		DZA65_RS05100	0.15	+1.1
1,050,400	+		DZA65_RS05100	0.15	-0.5
1,050,400	+		DZA65_RS05100	0.15	+0.0
1,050,400	+		DZA65_RS05100	0.15	+0.0
1,050,401	-		DZA65_RS05100	0.15	-1.0
1,050,401	-		DZA65_RS05100	0.15	+0.0
1,050,401	-		DZA65_RS05100	0.15	+0.7
1,050,401	-		DZA65_RS05100	0.15	+0.1
1,050,401	-		DZA65_RS05100	0.15	+1.7
1,050,401	-		DZA65_RS05100	0.15	+0.1
1,050,401	-		DZA65_RS05100	0.15	-0.8
1,050,401	-		DZA65_RS05100	0.15	-0.1
1,050,408	-		DZA65_RS05100	0.15	-0.2
1,050,408	-		DZA65_RS05100	0.15	-0.5
1,050,430	+		DZA65_RS05100	0.16	-0.1
1,050,548	+		DZA65_RS05100	0.19	+1.6
1,050,548	+		DZA65_RS05100	0.19	+0.9
1,050,548	+		DZA65_RS05100	0.19	-0.8
1,050,549	-		DZA65_RS05100	0.19	-0.3
1,050,549	-		DZA65_RS05100	0.19	-0.5
1,050,549	-		DZA65_RS05100	0.19	-1.2
1,050,549	-		DZA65_RS05100	0.19	+0.5
1,050,549	-		DZA65_RS05100	0.19	-2.0
1,050,549	-		DZA65_RS05100	0.19	-1.2
1,050,549	-		DZA65_RS05100	0.19	-1.8
1,050,609	+		DZA65_RS05100	0.21	+0.3
1,050,610	-		DZA65_RS05100	0.21	-0.2
1,050,631	-		DZA65_RS05100	0.22	-0.2
1,050,644	-		DZA65_RS05100	0.22	-0.2
1,050,644	-		DZA65_RS05100	0.22	-0.1
1,050,692	+		DZA65_RS05100	0.23	+1.3
1,050,692	+		DZA65_RS05100	0.23	-0.5
1,050,693	-		DZA65_RS05100	0.23	-0.1
1,050,714	+		DZA65_RS05100	0.24	+0.1
1,050,739	+		DZA65_RS05100	0.25	-0.1
1,050,746	+		DZA65_RS05100	0.25	+1.9
1,050,746	+		DZA65_RS05100	0.25	-3.0
1,050,747	-		DZA65_RS05100	0.25	-1.5
1,050,748	+		DZA65_RS05100	0.25	+1.0
1,050,748	+		DZA65_RS05100	0.25	+0.4
1,050,748	+		DZA65_RS05100	0.25	+0.9
1,050,748	+		DZA65_RS05100	0.25	-0.0
1,050,748	+		DZA65_RS05100	0.25	+0.3
1,050,748	+		DZA65_RS05100	0.25	-0.2
1,050,748	+		DZA65_RS05100	0.25	-0.8
1,050,748	+		DZA65_RS05100	0.25	+0.7
1,050,748	+		DZA65_RS05100	0.25	-0.5
1,050,748	+		DZA65_RS05100	0.25	-0.4
1,050,748	+		DZA65_RS05100	0.25	-0.7
1,050,748	+		DZA65_RS05100	0.25	+2.1
1,050,748	+		DZA65_RS05100	0.25	+0.5
1,050,748	+		DZA65_RS05100	0.25	-0.7
1,050,748	+		DZA65_RS05100	0.25	-0.1
1,050,749	-		DZA65_RS05100	0.25	-0.7
1,050,749	-		DZA65_RS05100	0.25	-1.1
1,050,749	-		DZA65_RS05100	0.25	+0.1
1,050,872	+		DZA65_RS05100	0.28	+0.3
1,050,872	+		DZA65_RS05100	0.28	-0.8
1,050,872	+		DZA65_RS05100	0.28	-0.4
1,050,872	+		DZA65_RS05100	0.28	+0.8
1,050,872	+		DZA65_RS05100	0.28	+0.2
1,050,872	+		DZA65_RS05100	0.28	+0.9
1,050,872	+		DZA65_RS05100	0.28	+0.1
1,050,873	-		DZA65_RS05100	0.28	+0.6
1,050,873	-		DZA65_RS05100	0.28	-0.0
1,050,873	-		DZA65_RS05100	0.28	-0.3
1,050,873	-		DZA65_RS05100	0.28	+0.6
1,050,873	-		DZA65_RS05100	0.28	+1.7
1,050,873	-		DZA65_RS05100	0.28	-0.3
1,050,873	-		DZA65_RS05100	0.28	-0.5
1,050,873	-				-2.2
1,050,873	-		DZA65_RS05100	0.28	-0.5
1,050,874	+		DZA65_RS05100	0.28	-0.7
1,050,875	-		DZA65_RS05100	0.28	+0.3
1,050,875	-		DZA65_RS05100	0.28	+0.8
1,050,875	-		DZA65_RS05100	0.28	+1.3
1,050,941	+		DZA65_RS05100	0.30	+0.8
1,050,941	+		DZA65_RS05100	0.30	-0.4
1,050,942	-		DZA65_RS05100	0.30	+0.7
1,050,942	-		DZA65_RS05100	0.30	-0.5
1,051,011	+		DZA65_RS05100	0.32	-0.5
1,051,117	+		DZA65_RS05100	0.35	+0.0
1,051,118	-		DZA65_RS05100	0.35	-0.7
1,051,301	+		DZA65_RS05100	0.40	+0.9
1,051,302	-		DZA65_RS05100	0.40	+0.6
1,051,302	-		DZA65_RS05100	0.40	+0.9
1,051,308	+		DZA65_RS05100	0.40	+0.0
1,051,308	+		DZA65_RS05100	0.40	-0.9
1,051,308	+		DZA65_RS05100	0.40	+0.1
1,051,308	+		DZA65_RS05100	0.40	+0.2
1,051,308	+		DZA65_RS05100	0.40	-0.5
1,051,308	+		DZA65_RS05100	0.40	+0.9
1,051,308	+		DZA65_RS05100	0.40	-0.4
1,051,309	-		DZA65_RS05100	0.40	+0.8
1,051,309	-		DZA65_RS05100	0.40	+0.8
1,051,309	-		DZA65_RS05100	0.40	+1.0
1,051,309	-		DZA65_RS05100	0.40	+0.3
1,051,309	-		DZA65_RS05100	0.40	+0.2
1,051,342	-		DZA65_RS05100	0.41	+0.9
1,051,355	-		DZA65_RS05100	0.42	-1.4
1,051,427	+		DZA65_RS05100	0.44	+0.2
1,051,475	+		DZA65_RS05100	0.45	+0.1
1,051,510	+		DZA65_RS05100	0.46	+0.8
1,051,510	+		DZA65_RS05100	0.46	+0.6
1,051,539	+		DZA65_RS05100	0.47	+0.3
1,051,540	-		DZA65_RS05100	0.47	-0.0
1,051,609	+		DZA65_RS05100	0.49	+0.2
1,051,613	+		DZA65_RS05100	0.49	-1.0
1,051,614	-		DZA65_RS05100	0.49	+0.6
1,051,614	-		DZA65_RS05100	0.49	-1.0
1,051,614	-		DZA65_RS05100	0.49	+1.3
1,051,614	-		DZA65_RS05100	0.49	-0.5
1,051,614	-		DZA65_RS05100	0.49	+1.1
1,051,635	+		DZA65_RS05100	0.49	-0.4
1,051,636	-				+0.3
1,051,778	-		DZA65_RS05100	0.53	-0.0
1,052,110	-		DZA65_RS05100	0.62	+0.6
1,052,392	+		DZA65_RS05100	0.70	-0.1
1,052,392	+		DZA65_RS05100	0.70	-0.1
1,052,392	+		DZA65_RS05100	0.70	-0.2
1,052,393	-		DZA65_RS05100	0.70	-1.7
1,052,442	+		DZA65_RS05100	0.72	+1.5
1,052,443	-		DZA65_RS05100	0.72	-0.4
1,052,443	-		DZA65_RS05100	0.72	+0.5
1,052,562	+		DZA65_RS05100	0.75	+1.0
1,052,597	-		DZA65_RS05100	0.76	+0.5
1,052,597	-		DZA65_RS05100	0.76	-1.5
1,052,597	-		DZA65_RS05100	0.76	-1.7
1,052,597	-		DZA65_RS05100	0.76	+0.9
1,052,797	+		DZA65_RS05100	0.81	+0.2
1,052,798	-		DZA65_RS05100	0.81	+0.6
1,052,798	-		DZA65_RS05100	0.81	+1.3
1,052,798	-		DZA65_RS05100	0.81	+1.3
1,052,798	-		DZA65_RS05100	0.81	-1.2
1,052,853	+		DZA65_RS05100	0.83	+0.6
1,052,853	+		DZA65_RS05100	0.83	-0.5
1,052,853	+		DZA65_RS05100	0.83	-0.7
1,052,853	+		DZA65_RS05100	0.83	+0.3
1,052,853	+		DZA65_RS05100	0.83	-0.2
1,052,853	+		DZA65_RS05100	0.83	+1.5
1,052,853	+		DZA65_RS05100	0.83	+1.2
1,052,853	+		DZA65_RS05100	0.83	-0.9
1,052,853	+		DZA65_RS05100	0.83	-3.2
1,052,853	+		DZA65_RS05100	0.83	+1.8
1,052,853	+		DZA65_RS05100	0.83	-1.2
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