Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04985

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,029,930	+		DZA65_RS04975	0.24	-1.0
1,029,931	-		DZA65_RS04975	0.25	-1.5
1,029,980	-		DZA65_RS04975	0.33	+0.2
1,030,026	+		DZA65_RS04975	0.41	-0.7
1,030,027	-		DZA65_RS04975	0.41	+1.3
1,030,027	-		DZA65_RS04975	0.41	-0.7
1,030,027	-		DZA65_RS04975	0.41	-0.2
1,030,067	+		DZA65_RS04975	0.47	-1.0
1,030,150	+		DZA65_RS04975	0.61	+0.1
1,030,150	+		DZA65_RS04975	0.61	-0.2
1,030,151	-		DZA65_RS04975	0.61	+0.3
1,030,151	-		DZA65_RS04975	0.61	-2.7
1,030,170	+		DZA65_RS04975	0.65	+0.0
1,030,170	+				+0.9
1,030,170	+		DZA65_RS04975	0.65	+0.6
1,030,171	-		DZA65_RS04975	0.65	-0.9
1,030,254	+		DZA65_RS04975	0.79	+0.9
1,030,290	+		DZA65_RS04975	0.84	-0.1
1,030,290	+		DZA65_RS04975	0.84	-1.2
1,030,290	+		DZA65_RS04975	0.84	-2.5
1,030,290	+		DZA65_RS04975	0.84	-0.2
1,030,290	+		DZA65_RS04975	0.84	-0.9
1,030,290	+		DZA65_RS04975	0.84	-0.1
1,030,290	+		DZA65_RS04975	0.84	-2.2
1,030,290	+		DZA65_RS04975	0.84	-0.8
1,030,290	+		DZA65_RS04975	0.84	+0.8
1,030,290	+		DZA65_RS04975	0.84	-1.1
1,030,290	+		DZA65_RS04975	0.84	-0.8
1,030,291	-		DZA65_RS04975	0.85	-2.5
1,030,291	-		DZA65_RS04975	0.85	+0.9
1,030,291	-		DZA65_RS04975	0.85	-1.2
1,030,291	-		DZA65_RS04975	0.85	+0.2
1,030,291	-		DZA65_RS04975	0.85	+1.9
1,030,291	-		DZA65_RS04975	0.85	-0.1
1,030,291	-		DZA65_RS04975	0.85	-1.2
1,030,291	-		DZA65_RS04975	0.85	-0.4
1,030,291	-		DZA65_RS04975	0.85	+0.5
1,030,291	-				-1.2
1,030,291	-		DZA65_RS04975	0.85	-1.2
1,030,292	+		DZA65_RS04975	0.85	-0.4
1,030,292	+		DZA65_RS04975	0.85	+0.6
1,030,292	+		DZA65_RS04975	0.85	-0.4
1,030,292	+		DZA65_RS04975	0.85	+0.1
1,030,292	+		DZA65_RS04975	0.85	+1.1
1,030,292	+		DZA65_RS04975	0.85	-0.1
1,030,293	-		DZA65_RS04975	0.85	-2.0
1,030,293	-		DZA65_RS04975	0.85	-1.4
1,030,293	-		DZA65_RS04975	0.85	-1.1
1,030,293	-		DZA65_RS04975	0.85	+0.3
1,030,293	-		DZA65_RS04975	0.85	+0.2
1,030,377	-				-0.3
1,030,417	-				+0.4
1,030,430	-				-0.2
1,030,492	+		DZA65_RS04980	0.22	+1.1
1,030,492	+		DZA65_RS04980	0.22	-0.0
1,030,493	-		DZA65_RS04980	0.22	-1.1
1,030,493	-		DZA65_RS04980	0.22	-2.0
1,030,493	-		DZA65_RS04980	0.22	-1.1
1,030,516	+		DZA65_RS04980	0.26	+0.1
1,030,517	-		DZA65_RS04980	0.26	-0.9
1,030,517	-		DZA65_RS04980	0.26	+0.5
1,030,517	-		DZA65_RS04980	0.26	-1.4
1,030,631	-		DZA65_RS04980	0.48	-1.5
1,030,641	+		DZA65_RS04980	0.50	-0.9
1,030,641	+		DZA65_RS04980	0.50	-2.2
1,030,691	+		DZA65_RS04980	0.60	-0.4
1,030,692	-		DZA65_RS04980	0.60	+0.7
1,030,784	-		DZA65_RS04980	0.78	+0.9
1,030,789	+		DZA65_RS04980	0.79	+0.3
1,030,789	+		DZA65_RS04980	0.79	-0.2
1,030,789	+		DZA65_RS04980	0.79	-0.2
1,030,790	-		DZA65_RS04980	0.79	+0.9
1,030,790	-		DZA65_RS04980	0.79	+0.0
1,030,790	-		DZA65_RS04980	0.79	-0.9
1,030,790	-		DZA65_RS04980	0.79	-0.3
1,030,868	-				-0.2
1,030,898	+				+1.6
1,030,898	+				+0.9
1,030,898	+				+0.1
1,030,898	+				+0.3
1,030,898	+				+0.3
1,031,059	+		DZA65_RS04985	0.49	-2.0
1,031,060	-		DZA65_RS04985	0.49	-2.5
1,031,060	-		DZA65_RS04985	0.49	-0.1
1,031,060	-				-1.2
1,031,068	+		DZA65_RS04985	0.51	-1.5
1,031,068	+		DZA65_RS04985	0.51	+2.7
1,031,068	+		DZA65_RS04985	0.51	-1.7
1,031,068	+		DZA65_RS04985	0.51	-0.7
1,031,069	-		DZA65_RS04985	0.52	-1.2
1,031,069	-		DZA65_RS04985	0.52	-1.7
1,031,069	-		DZA65_RS04985	0.52	-1.6
1,031,069	-		DZA65_RS04985	0.52	+0.6
1,031,097	+		DZA65_RS04985	0.60	-1.2
1,031,097	+		DZA65_RS04985	0.60	-1.2
1,031,097	+		DZA65_RS04985	0.60	-1.0
1,031,097	+		DZA65_RS04985	0.60	-0.0
1,031,098	-		DZA65_RS04985	0.61	-0.8
1,031,098	-		DZA65_RS04985	0.61	-1.7
1,031,098	-		DZA65_RS04985	0.61	-0.3
1,031,098	-		DZA65_RS04985	0.61	-0.2
1,031,098	-		DZA65_RS04985	0.61	+1.6
1,031,098	-		DZA65_RS04985	0.61	-1.2
1,031,098	-		DZA65_RS04985	0.61	-0.6
1,031,144	-		DZA65_RS04985	0.75	-0.1
1,031,221	+				-0.4
1,031,221	+				-0.9
1,031,221	+				+0.8
1,031,221	+				-2.0
1,031,221	+				+0.3
1,031,221	+				-0.2
1,031,222	-				+0.3
1,031,222	-				+0.5
1,031,222	-				-0.3
1,031,222	-				+1.0
1,031,222	-				+0.3
1,031,225	+				-1.5
1,031,225	+				+1.1
1,031,225	+				-0.1
1,031,225	+				+0.3
1,031,225	+				-0.5
1,031,225	+				-1.0
1,031,225	+				+0.3
1,031,226	-				-0.7
1,031,226	-				+1.5
1,031,226	-				-0.7
1,031,226	-				+0.7
1,031,226	-				+3.3
1,031,226	-				-0.2
1,031,226	-				+0.9
1,031,226	-				-0.0
1,031,226	-				-0.3
1,031,226	-				-1.7
1,031,370	+				+0.8
1,031,370	+				-0.1
1,031,371	-				-0.3
1,031,401	-				-1.5
1,031,422	+		DZA65_RS04990	0.10	-2.6
1,031,422	+		DZA65_RS04990	0.10	-0.8
1,031,423	-		DZA65_RS04990	0.10	-0.1
1,031,423	-		DZA65_RS04990	0.10	+1.3
1,031,444	+		DZA65_RS04990	0.11	-2.0
1,031,445	-		DZA65_RS04990	0.11	-0.2
1,031,520	+		DZA65_RS04990	0.15	+2.0
1,031,520	+		DZA65_RS04990	0.15	+0.6
1,031,520	+		DZA65_RS04990	0.15	-0.1
1,031,520	+		DZA65_RS04990	0.15	+0.8
1,031,520	+		DZA65_RS04990	0.15	+1.5
1,031,521	-		DZA65_RS04990	0.15	+0.5
1,031,521	-		DZA65_RS04990	0.15	+0.6
1,031,524	+		DZA65_RS04990	0.15	-0.2
1,031,524	+		DZA65_RS04990	0.15	+0.8
1,031,524	+		DZA65_RS04990	0.15	+0.3
1,031,524	+		DZA65_RS04990	0.15	+0.4
1,031,524	+		DZA65_RS04990	0.15	-2.2
1,031,524	+		DZA65_RS04990	0.15	-1.7
1,031,524	+		DZA65_RS04990	0.15	-0.2
1,031,524	+		DZA65_RS04990	0.15	+0.9
1,031,524	+		DZA65_RS04990	0.15	+0.7
1,031,524	+		DZA65_RS04990	0.15	-0.5
1,031,524	+		DZA65_RS04990	0.15	+0.2
1,031,525	-		DZA65_RS04990	0.15	-2.0
1,031,525	-		DZA65_RS04990	0.15	-2.1
1,031,525	-		DZA65_RS04990	0.15	-1.7
1,031,525	-		DZA65_RS04990	0.15	+0.2
1,031,525	-		DZA65_RS04990	0.15	-1.3
1,031,525	-		DZA65_RS04990	0.15	-1.2
1,031,525	-		DZA65_RS04990	0.15	-0.3
1,031,525	-		DZA65_RS04990	0.15	-1.7
1,031,637	+		DZA65_RS04990	0.20	-0.7
1,031,638	-		DZA65_RS04990	0.20	+0.2
1,031,747	+		DZA65_RS04990	0.26	+0.3
1,031,747	+		DZA65_RS04990	0.26	-0.2
1,031,747	+		DZA65_RS04990	0.26	-0.1
1,031,747	+		DZA65_RS04990	0.26	-0.2
1,031,747	+		DZA65_RS04990	0.26	-0.4
1,031,747	+		DZA65_RS04990	0.26	-0.1
1,031,747	+		DZA65_RS04990	0.26	-0.5
1,031,748	-		DZA65_RS04990	0.26	-0.2
1,031,748	-		DZA65_RS04990	0.26	-0.1
1,031,748	-		DZA65_RS04990	0.26	-1.2
1,031,748	-		DZA65_RS04990	0.26	+0.2
1,031,748	-		DZA65_RS04990	0.26	-0.3
1,031,748	-		DZA65_RS04990	0.26	-2.2
1,031,748	-		DZA65_RS04990	0.26	+0.1
1,031,773	+		DZA65_RS04990	0.27	-2.5
1,031,773	+		DZA65_RS04990	0.27	-0.5
1,031,773	+		DZA65_RS04990	0.27	+0.2
1,031,773	+		DZA65_RS04990	0.27	+1.1
1,031,773	+		DZA65_RS04990	0.27	+0.9
1,031,773	+		DZA65_RS04990	0.27	+0.2
1,031,773	+		DZA65_RS04990	0.27	-2.8
1,031,773	+		DZA65_RS04990	0.27	+0.1
1,031,773	+		DZA65_RS04990	0.27	-1.2
1,031,773	+		DZA65_RS04990	0.27	+0.9
1,031,773	+		DZA65_RS04990	0.27	+0.2
1,031,774	-		DZA65_RS04990	0.27	-0.5
1,031,774	-		DZA65_RS04990	0.27	+1.0
1,031,774	-		DZA65_RS04990	0.27	-2.2
1,031,774	-		DZA65_RS04990	0.27	-0.2
1,031,774	-		DZA65_RS04990	0.27	+0.2
1,031,840	-		DZA65_RS04990	0.30	+0.7
1,031,841	+		DZA65_RS04990	0.30	-0.1
1,031,841	+		DZA65_RS04990	0.30	+0.8
1,031,841	+		DZA65_RS04990	0.30	-0.1
1,031,841	+		DZA65_RS04990	0.30	-1.8
1,031,841	+		DZA65_RS04990	0.30	+1.0
1,031,841	+		DZA65_RS04990	0.30	-0.8
1,031,841	+		DZA65_RS04990	0.30	+0.5
1,031,841	+		DZA65_RS04990	0.30	-0.5
1,031,841	+		DZA65_RS04990	0.30	-0.4
1,031,841	+		DZA65_RS04990	0.30	-0.2
1,031,841	+		DZA65_RS04990	0.30	+1.1
1,031,841	+		DZA65_RS04990	0.30	-0.1
1,031,841	+		DZA65_RS04990	0.30	+0.3
1,031,841	+		DZA65_RS04990	0.30	-1.5
1,031,842	-		DZA65_RS04990	0.30	-0.1
1,031,842	-		DZA65_RS04990	0.30	+0.5
1,031,842	-		DZA65_RS04990	0.30	+1.1
1,031,842	-		DZA65_RS04990	0.30	-0.4
1,031,842	-		DZA65_RS04990	0.30	+0.2
1,031,842	-		DZA65_RS04990	0.30	+0.2
1,031,842	-		DZA65_RS04990	0.30	-0.2
1,031,842	-		DZA65_RS04990	0.30	+0.5
1,031,842	-		DZA65_RS04990	0.30	+1.5
1,031,842	-		DZA65_RS04990	0.30	-0.7
1,031,842	-		DZA65_RS04990	0.30	-0.7
1,031,842	-		DZA65_RS04990	0.30	+0.3
1,031,842	-		DZA65_RS04990	0.30	-1.4
1,031,842	-		DZA65_RS04990	0.30	-0.2
1,031,842	-		DZA65_RS04990	0.30	-2.5
1,031,860	+		DZA65_RS04990	0.31	+1.2
1,031,902	+		DZA65_RS04990	0.33	+0.3
1,031,902	+		DZA65_RS04990	0.33	-0.1
1,031,902	+		DZA65_RS04990	0.33	-0.0
1,031,902	+		DZA65_RS04990	0.33	+0.7
1,031,903	-		DZA65_RS04990	0.33	+0.3
1,031,945	+		DZA65_RS04990	0.35	-0.9
1,031,946	-		DZA65_RS04990	0.35	+0.2
1,031,946	-		DZA65_RS04990	0.35	-2.2
1,031,984	+		DZA65_RS04990	0.37	-0.1
1,031,984	+		DZA65_RS04990	0.37	-0.0
1,031,985	-		DZA65_RS04990	0.37	-1.4
1,031,985	-		DZA65_RS04990	0.37	+0.1
1,031,986	+		DZA65_RS04990	0.37	+1.3
1,032,031	+		DZA65_RS04990	0.39	-0.8
1,032,031	+		DZA65_RS04990	0.39	+0.1
1,032,032	-		DZA65_RS04990	0.39	+0.6
1,032,032	-		DZA65_RS04990	0.39	-1.0
1,032,073	+		DZA65_RS04990	0.41	+0.2
1,032,073	+		DZA65_RS04990	0.41	+0.3
1,032,074	-		DZA65_RS04990	0.41	-2.7
1,032,100	+		DZA65_RS04990	0.43	+0.5
1,032,143	+		DZA65_RS04990	0.45	-1.0
1,032,143	+		DZA65_RS04990	0.45	-0.5
1,032,143	+		DZA65_RS04990	0.45	-0.1
1,032,161	+		DZA65_RS04990	0.45	+0.3
1,032,161	+		DZA65_RS04990	0.45	-2.2
1,032,162	-		DZA65_RS04990	0.46	+1.8
1,032,162	-		DZA65_RS04990	0.46	-0.1
1,032,162	-		DZA65_RS04990	0.46	-0.2
1,032,185	+		DZA65_RS04990	0.47	-0.7
1,032,185	+		DZA65_RS04990	0.47	-0.3
1,032,185	+		DZA65_RS04990	0.47	+0.1
1,032,185	+		DZA65_RS04990	0.47	+0.3
1,032,185	+				+0.3
1,032,186	-		DZA65_RS04990	0.47	-0.3
1,032,186	-		DZA65_RS04990	0.47	+0.8
1,032,194	+		DZA65_RS04990	0.47	-1.2
1,032,194	+		DZA65_RS04990	0.47	-0.8
1,032,194	+		DZA65_RS04990	0.47	-0.2
1,032,194	+		DZA65_RS04990	0.47	-2.6
1,032,194	+		DZA65_RS04990	0.47	+0.3
1,032,194	+		DZA65_RS04990	0.47	+0.6
1,032,194	+		DZA65_RS04990	0.47	+1.0
1,032,194	+				-1.2
1,032,194	+		DZA65_RS04990	0.47	-0.9
1,032,195	-		DZA65_RS04990	0.47	+1.8
1,032,195	-		DZA65_RS04990	0.47	+0.9
1,032,195	-		DZA65_RS04990	0.47	+0.3
1,032,195	-		DZA65_RS04990	0.47	+0.1
1,032,195	-		DZA65_RS04990	0.47	-1.1
1,032,195	-		DZA65_RS04990	0.47	-0.4
1,032,195	-		DZA65_RS04990	0.47	-0.4
1,032,195	-		DZA65_RS04990	0.47	+0.2