Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04930

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,021,242	+		DZA65_RS04925	0.42	+0.3
1,021,287	-		DZA65_RS04925	0.45	+0.9
1,021,299	-		DZA65_RS04925	0.46	-1.1
1,021,344	+		DZA65_RS04925	0.49	+0.6
1,021,345	-		DZA65_RS04925	0.49	-0.2
1,021,377	+		DZA65_RS04925	0.51	+0.5
1,021,378	-		DZA65_RS04925	0.51	+1.3
1,021,378	-		DZA65_RS04925	0.51	-0.2
1,021,394	+		DZA65_RS04925	0.52	+0.3
1,021,394	+		DZA65_RS04925	0.52	-0.2
1,021,394	+		DZA65_RS04925	0.52	+1.1
1,021,395	-		DZA65_RS04925	0.52	+0.1
1,021,395	-		DZA65_RS04925	0.52	-0.2
1,021,395	-		DZA65_RS04925	0.52	-1.2
1,021,510	+		DZA65_RS04925	0.59	-1.1
1,021,511	-		DZA65_RS04925	0.59	-0.7
1,021,511	-		DZA65_RS04925	0.59	-1.1
1,021,511	-		DZA65_RS04925	0.59	+0.7
1,021,550	+		DZA65_RS04925	0.62	-0.9
1,021,551	-		DZA65_RS04925	0.62	-1.5
1,021,551	-		DZA65_RS04925	0.62	-0.8
1,021,554	+		DZA65_RS04925	0.62	+0.7
1,021,554	+		DZA65_RS04925	0.62	+0.3
1,021,554	+		DZA65_RS04925	0.62	+2.1
1,021,554	+		DZA65_RS04925	0.62	-0.3
1,021,554	+		DZA65_RS04925	0.62	+0.7
1,021,554	+		DZA65_RS04925	0.62	-0.8
1,021,554	+		DZA65_RS04925	0.62	+0.1
1,021,554	+		DZA65_RS04925	0.62	+1.5
1,021,554	+		DZA65_RS04925	0.62	+0.9
1,021,554	+		DZA65_RS04925	0.62	-0.7
1,021,555	-		DZA65_RS04925	0.62	-0.8
1,021,555	-		DZA65_RS04925	0.62	-0.7
1,021,555	-		DZA65_RS04925	0.62	-0.7
1,021,555	-		DZA65_RS04925	0.62	-0.1
1,021,555	-		DZA65_RS04925	0.62	-0.4
1,021,555	-		DZA65_RS04925	0.62	-1.5
1,021,598	+		DZA65_RS04925	0.65	-0.1
1,021,598	+		DZA65_RS04925	0.65	-0.2
1,021,599	-		DZA65_RS04925	0.65	-0.9
1,021,599	-		DZA65_RS04925	0.65	+0.3
1,021,599	-		DZA65_RS04925	0.65	-0.2
1,021,599	-		DZA65_RS04925	0.65	-1.7
1,021,599	-		DZA65_RS04925	0.65	-0.2
1,021,688	+		DZA65_RS04925	0.71	-0.3
1,021,688	+		DZA65_RS04925	0.71	-0.2
1,021,689	-		DZA65_RS04925	0.71	+0.1
1,021,689	-		DZA65_RS04925	0.71	-0.5
1,021,793	+		DZA65_RS04925	0.78	+1.8
1,021,794	-		DZA65_RS04925	0.78	-1.2
1,021,794	-		DZA65_RS04925	0.78	+1.3
1,021,806	-		DZA65_RS04925	0.78	+0.1
1,021,806	-		DZA65_RS04925	0.78	-0.3
1,021,806	-		DZA65_RS04925	0.78	-0.1
1,021,811	+		DZA65_RS04925	0.79	+0.3
1,021,811	+		DZA65_RS04925	0.79	+0.7
1,021,811	+		DZA65_RS04925	0.79	+0.5
1,021,811	+		DZA65_RS04925	0.79	+0.2
1,021,812	-		DZA65_RS04925	0.79	+0.0
1,021,812	-		DZA65_RS04925	0.79	+0.9
1,021,904	-		DZA65_RS04925	0.85	-0.1
1,021,952	+		DZA65_RS04925	0.88	-1.2
1,021,953	-		DZA65_RS04925	0.88	-1.0
1,021,953	-		DZA65_RS04925	0.88	+0.3
1,021,976	+		DZA65_RS04925	0.89	+0.3
1,021,985	-		DZA65_RS04925	0.90	-0.7
1,022,188	+				-0.2
1,022,189	-				-0.0
1,022,191	+				+0.8
1,022,192	-				-1.7
1,022,192	-				+0.9
1,022,192	-				+0.2
1,022,212	-				-1.1
1,022,338	+		DZA65_RS04930	0.16	+1.2
1,022,338	+		DZA65_RS04930	0.16	+0.5
1,022,338	+		DZA65_RS04930	0.16	+0.0
1,022,338	+		DZA65_RS04930	0.16	+0.3
1,022,338	+		DZA65_RS04930	0.16	-1.7
1,022,338	+		DZA65_RS04930	0.16	+0.2
1,022,338	+		DZA65_RS04930	0.16	+0.9
1,022,338	+		DZA65_RS04930	0.16	-0.8
1,022,338	+		DZA65_RS04930	0.16	+1.0
1,022,339	-		DZA65_RS04930	0.16	+0.3
1,022,339	-		DZA65_RS04930	0.16	-2.5
1,022,339	-		DZA65_RS04930	0.16	-0.5
1,022,339	-		DZA65_RS04930	0.16	+0.0
1,022,339	-		DZA65_RS04930	0.16	-0.0
1,022,339	-		DZA65_RS04930	0.16	+0.2
1,022,339	-		DZA65_RS04930	0.16	+1.1
1,022,339	-		DZA65_RS04930	0.16	-0.5
1,022,339	-		DZA65_RS04930	0.16	+1.9
1,022,340	+		DZA65_RS04930	0.16	-1.0
1,022,340	+		DZA65_RS04930	0.16	+0.3
1,022,340	+		DZA65_RS04930	0.16	-1.7
1,022,340	+		DZA65_RS04930	0.16	+2.9
1,022,340	+		DZA65_RS04930	0.16	+0.3
1,022,341	-		DZA65_RS04930	0.16	+0.3
1,022,341	-		DZA65_RS04930	0.16	-0.7
1,022,341	-		DZA65_RS04930	0.16	+0.2
1,022,341	-		DZA65_RS04930	0.16	-1.7
1,022,341	-		DZA65_RS04930	0.16	+1.3
1,022,341	-		DZA65_RS04930	0.16	-0.4
1,022,341	-		DZA65_RS04930	0.16	-0.0
1,022,417	+		DZA65_RS04930	0.23	-0.4
1,022,555	-		DZA65_RS04930	0.36	-1.2
1,022,571	-		DZA65_RS04930	0.38	-0.1
1,022,598	+		DZA65_RS04930	0.40	-1.0
1,022,599	-		DZA65_RS04930	0.40	-2.1
1,022,599	-		DZA65_RS04930	0.40	-1.0
1,022,599	-		DZA65_RS04930	0.40	-0.8
1,022,602	-		DZA65_RS04930	0.41	-0.8
1,022,628	+		DZA65_RS04930	0.43	+0.3
1,022,628	+		DZA65_RS04930	0.43	-0.4
1,022,629	-		DZA65_RS04930	0.43	-0.3
1,022,712	-		DZA65_RS04930	0.51	+0.8
1,022,786	+		DZA65_RS04930	0.58	-1.8
1,022,786	+		DZA65_RS04930	0.58	-0.7
1,022,786	+		DZA65_RS04930	0.58	-0.4
1,022,787	-		DZA65_RS04930	0.58	+0.5
1,022,797	+		DZA65_RS04930	0.59	-0.7
1,022,797	+		DZA65_RS04930	0.59	-0.9
1,022,797	+		DZA65_RS04930	0.59	-0.2
1,022,797	+		DZA65_RS04930	0.59	-0.3
1,022,797	+		DZA65_RS04930	0.59	+0.1
1,022,798	-		DZA65_RS04930	0.59	-0.8
1,022,798	-		DZA65_RS04930	0.59	+0.3
1,022,818	+		DZA65_RS04930	0.61	+0.2
1,022,818	+				+0.9
1,022,819	-		DZA65_RS04930	0.61	+0.3
1,022,868	-		DZA65_RS04930	0.65	-0.5
1,023,037	+		DZA65_RS04930	0.81	-1.0
1,023,037	+				+0.9
1,023,037	+		DZA65_RS04930	0.81	+1.2
1,023,038	-		DZA65_RS04930	0.81	-0.4
1,023,038	-		DZA65_RS04930	0.81	+0.5
1,023,038	-		DZA65_RS04930	0.81	-0.3
1,023,038	-		DZA65_RS04930	0.81	-0.1
1,023,038	-		DZA65_RS04930	0.81	-0.0
1,023,038	-		DZA65_RS04930	0.81	-0.2
1,023,078	+		DZA65_RS04930	0.85	+0.6
1,023,088	+		DZA65_RS04930	0.86	-0.4
1,023,088	+		DZA65_RS04930	0.86	-0.3
1,023,088	+		DZA65_RS04930	0.86	+0.0
1,023,088	+		DZA65_RS04930	0.86	-0.9
1,023,088	+		DZA65_RS04930	0.86	+0.8
1,023,088	+		DZA65_RS04930	0.86	-2.2
1,023,088	+		DZA65_RS04930	0.86	-0.2
1,023,089	-		DZA65_RS04930	0.86	-0.3
1,023,089	-		DZA65_RS04930	0.86	-1.2
1,023,089	-		DZA65_RS04930	0.86	-0.8
1,023,089	-		DZA65_RS04930	0.86	-1.2
1,023,089	-		DZA65_RS04930	0.86	+0.7
1,023,089	-		DZA65_RS04930	0.86	-0.3
1,023,089	-		DZA65_RS04930	0.86	-0.0
1,023,089	-		DZA65_RS04930	0.86	-0.7
1,023,089	-		DZA65_RS04930	0.86	-0.7
1,023,170	+				+1.3
1,023,185	+				-0.0
1,023,186	-				-0.4
1,023,230	+				-1.7
1,023,230	+				+0.2
1,023,231	-				+0.1
1,023,248	+				-0.4
1,023,248	+				-0.4
1,023,248	+				-0.7
1,023,248	+				-0.8
1,023,248	+				+0.4
1,023,249	-				-1.5
1,023,249	-				+0.2
1,023,249	-				-0.2
1,023,249	-				-3.0
1,023,249	-				-1.2
1,023,252	+				-0.0
1,023,252	+				+0.8
1,023,252	+				+0.3
1,023,252	+				-1.1
1,023,252	+				+0.7
1,023,252	+				+0.3
1,023,252	+				+1.2
1,023,252	+				-0.7
1,023,252	+				-0.5
1,023,253	-				+1.3
1,023,253	-				-2.8
1,023,253	-				-1.0
1,023,253	-				-0.4
1,023,253	-				+1.0
1,023,253	-				+0.1
1,023,253	-				-0.2
1,023,253	-				+0.3
1,023,253	-				-0.3
1,023,253	-				-0.2
1,023,253	-				-0.4
1,023,253	-				+0.2
1,023,253	-				+1.1
1,023,253	-				+0.3
1,023,320	+		DZA65_RS04935	0.12	-0.8
1,023,320	+		DZA65_RS04935	0.12	-0.1
1,023,320	+		DZA65_RS04935	0.12	+0.3
1,023,321	-		DZA65_RS04935	0.12	+1.7
1,023,321	-		DZA65_RS04935	0.12	-0.2
1,023,321	-		DZA65_RS04935	0.12	-0.3
1,023,343	+				+0.3
1,023,343	+		DZA65_RS04935	0.16	+0.3
1,023,343	+		DZA65_RS04935	0.16	+0.3
1,023,343	+		DZA65_RS04935	0.16	+0.0
1,023,343	+		DZA65_RS04935	0.16	+1.5
1,023,343	+		DZA65_RS04935	0.16	+0.1
1,023,344	-		DZA65_RS04935	0.16	+0.8
1,023,344	-		DZA65_RS04935	0.16	-1.8
1,023,344	-		DZA65_RS04935	0.16	-0.4
1,023,344	-		DZA65_RS04935	0.16	+1.0
1,023,375	+		DZA65_RS04935	0.21	+0.3
1,023,454	+		DZA65_RS04935	0.35	+0.8
1,023,462	+		DZA65_RS04935	0.36	+2.2
1,023,463	-		DZA65_RS04935	0.36	+0.8
1,023,463	-		DZA65_RS04935	0.36	-0.3
1,023,471	+		DZA65_RS04935	0.38	+0.9
1,023,472	-		DZA65_RS04935	0.38	+0.1
1,023,572	-		DZA65_RS04935	0.55	+0.1
1,023,606	+		DZA65_RS04935	0.61	-0.5
1,023,616	-		DZA65_RS04935	0.63	-1.7
1,023,616	-		DZA65_RS04935	0.63	+0.0
1,023,638	-		DZA65_RS04935	0.66	-0.4
1,023,638	-		DZA65_RS04935	0.66	-1.1
1,023,663	+		DZA65_RS04935	0.71	-1.2
1,023,663	+		DZA65_RS04935	0.71	-0.7
1,023,663	+		DZA65_RS04935	0.71	-0.9
1,023,663	+		DZA65_RS04935	0.71	+1.0
1,023,664	-		DZA65_RS04935	0.71	+0.3
1,023,664	-		DZA65_RS04935	0.71	+0.8
1,023,664	-		DZA65_RS04935	0.71	-0.5
1,023,664	-		DZA65_RS04935	0.71	+0.8
1,023,664	-		DZA65_RS04935	0.71	-2.5
1,023,664	-		DZA65_RS04935	0.71	-0.2
1,023,708	+		DZA65_RS04935	0.79	-0.1
1,023,784	-				-0.6
1,023,801	+				+0.3
1,023,801	+				+1.2
1,023,801	+				+0.7
1,023,802	-				+0.5
1,023,817	-				-2.5
1,023,822	+				+0.5
1,023,843	+				+0.6
1,023,843	+				+0.2
1,023,844	-				-0.7
1,023,878	-				-0.4
1,023,924	+		DZA65_RS04940	0.18	-0.3
1,023,925	-		DZA65_RS04940	0.18	-0.7
1,023,925	-		DZA65_RS04940	0.18	+1.3
1,023,996	-		DZA65_RS04940	0.33	-0.5
1,024,038	+		DZA65_RS04940	0.42	-1.2
1,024,134	-		DZA65_RS04940	0.61	+0.3
1,024,134	-		DZA65_RS04940	0.61	+1.2
1,024,134	-		DZA65_RS04940	0.61	-0.1
1,024,139	-		DZA65_RS04940	0.63	+0.3
1,024,139	-		DZA65_RS04940	0.63	+0.2
1,024,139	-		DZA65_RS04940	0.63	-1.5
1,024,209	+		DZA65_RS04940	0.77	-0.1
1,024,209	+		DZA65_RS04940	0.77	+0.3
1,024,209	+		DZA65_RS04940	0.77	+0.7
1,024,210	-		DZA65_RS04940	0.77	+1.0
1,024,210	-		DZA65_RS04940	0.77	-0.2
1,024,210	-		DZA65_RS04940	0.77	-1.2
1,024,210	-		DZA65_RS04940	0.77	-0.3
1,024,210	-		DZA65_RS04940	0.77	-0.2