Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04915

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,017,830	+				-1.7
1,017,830	+		DZA65_RS04910	0.43	-1.2
1,017,831	-		DZA65_RS04910	0.43	+0.3
1,017,898	-		DZA65_RS04910	0.47	-0.1
1,017,911	+		DZA65_RS04910	0.48	+0.3
1,017,911	+		DZA65_RS04910	0.48	-0.2
1,017,912	-		DZA65_RS04910	0.48	+1.3
1,017,912	-		DZA65_RS04910	0.48	+0.5
1,017,912	-		DZA65_RS04910	0.48	+0.6
1,017,968	+		DZA65_RS04910	0.51	-2.1
1,017,992	+		DZA65_RS04910	0.53	+1.6
1,017,992	+		DZA65_RS04910	0.53	-0.6
1,017,992	+		DZA65_RS04910	0.53	-1.7
1,017,993	-				-1.7
1,017,993	-		DZA65_RS04910	0.53	-0.4
1,017,993	-		DZA65_RS04910	0.53	-2.1
1,017,993	-		DZA65_RS04910	0.53	+0.2
1,018,004	-		DZA65_RS04910	0.53	+1.6
1,018,023	+		DZA65_RS04910	0.55	-0.7
1,018,023	+		DZA65_RS04910	0.55	-0.2
1,018,024	-		DZA65_RS04910	0.55	-1.7
1,018,050	-		DZA65_RS04910	0.56	+0.4
1,018,061	-		DZA65_RS04910	0.57	+0.2
1,018,070	+		DZA65_RS04910	0.57	+0.9
1,018,071	-				-0.1
1,018,071	-		DZA65_RS04910	0.57	-2.4
1,018,072	+		DZA65_RS04910	0.57	-0.1
1,018,072	+		DZA65_RS04910	0.57	+0.2
1,018,072	+		DZA65_RS04910	0.57	+0.3
1,018,072	+		DZA65_RS04910	0.57	-1.2
1,018,072	+		DZA65_RS04910	0.57	-0.4
1,018,073	-		DZA65_RS04910	0.57	+1.2
1,018,073	-		DZA65_RS04910	0.57	-2.3
1,018,073	-		DZA65_RS04910	0.57	+0.3
1,018,073	-		DZA65_RS04910	0.57	+0.0
1,018,135	-		DZA65_RS04910	0.61	-0.5
1,018,135	-		DZA65_RS04910	0.61	+0.5
1,018,181	+		DZA65_RS04910	0.64	+0.6
1,018,353	+		DZA65_RS04910	0.74	-0.7
1,018,398	-		DZA65_RS04910	0.77	+0.1
1,018,398	-		DZA65_RS04910	0.77	-0.2
1,018,398	-		DZA65_RS04910	0.77	+1.9
1,018,439	+		DZA65_RS04910	0.79	+0.8
1,018,481	+		DZA65_RS04910	0.82	-0.2
1,018,481	+		DZA65_RS04910	0.82	+1.6
1,018,524	+		DZA65_RS04910	0.84	+1.0
1,018,524	+		DZA65_RS04910	0.84	-0.2
1,018,524	+		DZA65_RS04910	0.84	-0.7
1,018,524	+		DZA65_RS04910	0.84	-0.3
1,018,525	-		DZA65_RS04910	0.84	+0.1
1,018,525	-		DZA65_RS04910	0.84	-0.7
1,018,554	-		DZA65_RS04910	0.86	-1.8
1,018,592	+		DZA65_RS04910	0.88	+1.3
1,018,593	-		DZA65_RS04910	0.88	+0.2
1,018,625	+				+0.8
1,018,625	+				+0.3
1,018,626	-				+2.3
1,018,626	-				-0.7
1,018,626	-				+1.1
1,018,700	+				+2.2
1,018,700	+				+1.5
1,018,700	+				+0.4
1,018,701	-				-0.4
1,018,701	-				+0.5
1,018,801	-				-0.7
1,018,810	-				+1.3
1,018,818	+				-0.9
1,018,819	-				+0.2
1,018,819	-				+0.8
1,018,821	+				-0.4
1,018,822	-				+0.1
1,018,822	-				-0.4
1,018,891	+				-0.7
1,018,891	+				+0.0
1,018,910	+				+2.8
1,018,910	+				+0.6
1,018,910	+				-1.2
1,018,910	+				+1.2
1,018,911	-				-1.2
1,018,949	+		DZA65_RS04915	0.11	-1.0
1,018,949	+		DZA65_RS04915	0.11	+0.3
1,018,949	+		DZA65_RS04915	0.11	+0.2
1,018,950	-		DZA65_RS04915	0.12	+0.7
1,018,950	-		DZA65_RS04915	0.12	+0.1
1,018,954	-		DZA65_RS04915	0.12	+0.7
1,018,984	+		DZA65_RS04915	0.14	+0.1
1,018,985	-		DZA65_RS04915	0.14	+0.8
1,018,985	-		DZA65_RS04915	0.14	+0.2
1,018,985	-		DZA65_RS04915	0.14	+1.6
1,019,023	+		DZA65_RS04915	0.17	-0.8
1,019,023	+		DZA65_RS04915	0.17	+1.3
1,019,023	+		DZA65_RS04915	0.17	+0.2
1,019,023	+		DZA65_RS04915	0.17	-0.1
1,019,023	+		DZA65_RS04915	0.17	-1.0
1,019,023	+		DZA65_RS04915	0.17	-1.1
1,019,023	+		DZA65_RS04915	0.17	+1.9
1,019,023	+		DZA65_RS04915	0.17	-0.5
1,019,023	+		DZA65_RS04915	0.17	-1.7
1,019,023	+		DZA65_RS04915	0.17	-0.4
1,019,023	+		DZA65_RS04915	0.17	-0.5
1,019,023	+		DZA65_RS04915	0.17	-1.8
1,019,023	+		DZA65_RS04915	0.17	-1.5
1,019,024	-		DZA65_RS04915	0.17	+0.4
1,019,024	-		DZA65_RS04915	0.17	+0.4
1,019,024	-		DZA65_RS04915	0.17	-0.6
1,019,024	-		DZA65_RS04915	0.17	+0.8
1,019,024	-		DZA65_RS04915	0.17	+0.5
1,019,024	-		DZA65_RS04915	0.17	-2.0
1,019,024	-		DZA65_RS04915	0.17	-0.4
1,019,024	-		DZA65_RS04915	0.17	+0.4
1,019,024	-		DZA65_RS04915	0.17	+0.3
1,019,024	-		DZA65_RS04915	0.17	+0.3
1,019,024	-		DZA65_RS04915	0.17	+0.3
1,019,024	-		DZA65_RS04915	0.17	-0.5
1,019,024	-		DZA65_RS04915	0.17	+0.1
1,019,024	-		DZA65_RS04915	0.17	-2.1
1,019,024	-		DZA65_RS04915	0.17	+1.6
1,019,024	-		DZA65_RS04915	0.17	-2.0
1,019,035	-		DZA65_RS04915	0.18	+0.3
1,019,068	+		DZA65_RS04915	0.21	+0.8
1,019,068	+		DZA65_RS04915	0.21	-1.0
1,019,068	+		DZA65_RS04915	0.21	-0.7
1,019,068	+		DZA65_RS04915	0.21	-0.2
1,019,068	+		DZA65_RS04915	0.21	-0.4
1,019,069	-		DZA65_RS04915	0.21	+0.5
1,019,069	-		DZA65_RS04915	0.21	-0.2
1,019,069	-		DZA65_RS04915	0.21	-0.7
1,019,078	-		DZA65_RS04915	0.22	-0.1
1,019,078	-		DZA65_RS04915	0.22	+1.3
1,019,123	+		DZA65_RS04915	0.25	+0.1
1,019,124	-		DZA65_RS04915	0.25	-0.2
1,019,124	-		DZA65_RS04915	0.25	-0.2
1,019,124	-		DZA65_RS04915	0.25	-1.5
1,019,124	-		DZA65_RS04915	0.25	-0.9
1,019,124	-		DZA65_RS04915	0.25	+0.2
1,019,300	+		DZA65_RS04915	0.39	+1.2
1,019,300	+		DZA65_RS04915	0.39	+1.7
1,019,300	+		DZA65_RS04915	0.39	-1.2
1,019,300	+		DZA65_RS04915	0.39	+0.6
1,019,300	+		DZA65_RS04915	0.39	-0.1
1,019,301	-		DZA65_RS04915	0.39	-0.3
1,019,301	-		DZA65_RS04915	0.39	+0.7
1,019,301	-		DZA65_RS04915	0.39	+1.3
1,019,301	-		DZA65_RS04915	0.39	-1.2
1,019,357	+		DZA65_RS04915	0.43	-0.4
1,019,358	-		DZA65_RS04915	0.43	+0.3
1,019,358	-		DZA65_RS04915	0.43	-0.1
1,019,386	+		DZA65_RS04915	0.45	+1.0
1,019,386	+		DZA65_RS04915	0.45	-0.2
1,019,386	+		DZA65_RS04915	0.45	-0.2
1,019,444	+		DZA65_RS04915	0.50	+0.1
1,019,444	+		DZA65_RS04915	0.50	+0.3
1,019,444	+		DZA65_RS04915	0.50	+0.6
1,019,444	+		DZA65_RS04915	0.50	+1.3
1,019,444	+		DZA65_RS04915	0.50	-1.0
1,019,445	-		DZA65_RS04915	0.50	+0.2
1,019,445	-		DZA65_RS04915	0.50	-0.1
1,019,445	-		DZA65_RS04915	0.50	+0.2
1,019,445	-		DZA65_RS04915	0.50	-1.7
1,019,445	-		DZA65_RS04915	0.50	+0.6
1,019,445	-		DZA65_RS04915	0.50	+0.6
1,019,598	+		DZA65_RS04915	0.62	-0.1
1,019,599	-		DZA65_RS04915	0.62	-0.0
1,019,610	+		DZA65_RS04915	0.63	-0.5
1,019,611	-		DZA65_RS04915	0.63	-0.2
1,019,635	+		DZA65_RS04915	0.65	+1.5
1,019,635	+		DZA65_RS04915	0.65	-0.7
1,019,635	+		DZA65_RS04915	0.65	+0.9
1,019,636	-		DZA65_RS04915	0.65	-0.2
1,019,636	-		DZA65_RS04915	0.65	+1.3
1,019,655	+		DZA65_RS04915	0.66	+0.3
1,019,656	-		DZA65_RS04915	0.66	-0.4
1,019,827	-		DZA65_RS04915	0.80	+0.4
1,019,827	-		DZA65_RS04915	0.80	+2.0
1,019,827	-		DZA65_RS04915	0.80	+0.7
1,019,908	-		DZA65_RS04915	0.86	-0.1
1,019,908	-		DZA65_RS04915	0.86	+0.9
1,020,015	+				+0.5
1,020,015	+				+1.0
1,020,015	+				-0.7
1,020,016	-				-1.5
1,020,048	+				+2.3
1,020,048	+				+0.1
1,020,048	+				-0.5
1,020,052	+				-0.3
1,020,053	-				-0.4
1,020,073	+				-2.0
1,020,073	+				-0.2
1,020,074	-				+0.3
1,020,074	-				-0.2
1,020,074	-				+0.3
1,020,074	-				+0.8
1,020,138	+		DZA65_RS04920	0.13	-0.7
1,020,138	+		DZA65_RS04920	0.13	+0.7
1,020,138	+		DZA65_RS04920	0.13	+0.5
1,020,139	-		DZA65_RS04920	0.13	+0.8
1,020,139	-		DZA65_RS04920	0.13	-0.5
1,020,139	-		DZA65_RS04920	0.13	+0.9
1,020,152	-		DZA65_RS04920	0.16	-1.1
1,020,152	-		DZA65_RS04920	0.16	+0.0
1,020,208	+		DZA65_RS04920	0.27	+0.5
1,020,208	+		DZA65_RS04920	0.27	-1.7
1,020,208	+		DZA65_RS04920	0.27	+1.3
1,020,208	+		DZA65_RS04920	0.27	+1.1
1,020,208	+		DZA65_RS04920	0.27	-2.2
1,020,208	+		DZA65_RS04920	0.27	-1.2
1,020,208	+				-0.7
1,020,209	-		DZA65_RS04920	0.27	+1.9
1,020,209	-		DZA65_RS04920	0.27	-0.9
1,020,209	-		DZA65_RS04920	0.27	-1.7
1,020,209	-		DZA65_RS04920	0.27	+1.3
1,020,209	-		DZA65_RS04920	0.27	+0.5
1,020,209	-		DZA65_RS04920	0.27	+1.0
1,020,400	-		DZA65_RS04920	0.65	-0.4
1,020,417	-		DZA65_RS04920	0.68	-0.1
1,020,436	-		DZA65_RS04920	0.72	-1.1
1,020,579	+				-0.5
1,020,579	+				+3.8
1,020,604	+				+0.3
1,020,604	+				-0.5
1,020,604	+				-0.9
1,020,604	+				-0.3
1,020,604	+				+0.6
1,020,604	+				+2.2
1,020,605	-				+0.8
1,020,605	-				+0.3
1,020,608	+				+0.7
1,020,609	-				-2.2
1,020,609	-				+1.8
1,020,698	+				+0.0
1,020,698	+				+0.1
1,020,698	+				+1.6
1,020,698	+				+0.5
1,020,698	+				-1.1
1,020,698	+				-0.2
1,020,698	+				-0.8
1,020,698	+				+1.2
1,020,698	+				-1.2
1,020,698	+				-1.4
1,020,699	-				+0.0
1,020,699	-				+0.1
1,020,699	-				+0.1
1,020,699	-				-2.1
1,020,699	-				-0.4
1,020,699	-				-1.0
1,020,699	-				-1.5
1,020,699	-				-0.7
1,020,699	-				+1.1
1,020,699	-				-0.9
1,020,700	+				+0.7
1,020,700	+				-1.2
1,020,700	+				-2.8
1,020,700	+				-1.0
1,020,700	+				-0.0
1,020,700	+				+0.5
1,020,700	+				-0.1
1,020,700	+				+0.9
1,020,701	-				-0.3
1,020,701	-				-0.5
1,020,701	-				-0.7
1,020,725	+				-0.6
1,020,726	-				-0.5
1,020,726	-				-1.0
1,020,787	+		DZA65_RS04925	0.13	-0.4
1,020,787	+		DZA65_RS04925	0.13	+1.3
1,020,788	-		DZA65_RS04925	0.13	-0.5
1,020,797	+		DZA65_RS04925	0.14	-0.3
1,020,855	+		DZA65_RS04925	0.17	-0.0
1,020,855	+		DZA65_RS04925	0.17	-1.7
1,020,855	+		DZA65_RS04925	0.17	-2.0
1,020,856	-		DZA65_RS04925	0.17	-0.7
1,020,856	-		DZA65_RS04925	0.17	+0.1
1,020,856	-		DZA65_RS04925	0.17	-1.4
1,020,856	-		DZA65_RS04925	0.17	-0.7
1,020,856	-		DZA65_RS04925	0.17	+0.4
1,020,899	+		DZA65_RS04925	0.20	+0.3
1,020,899	+				+0.9
1,020,957	+		DZA65_RS04925	0.24	-0.1
1,020,957	+		DZA65_RS04925	0.24	+0.1
1,020,957	+		DZA65_RS04925	0.24	-1.2
1,020,957	+		DZA65_RS04925	0.24	-0.8
1,020,957	+		DZA65_RS04925	0.24	-0.0
1,020,957	+		DZA65_RS04925	0.24	-2.2
1,020,957	+		DZA65_RS04925	0.24	+1.2
1,020,957	+		DZA65_RS04925	0.24	-2.4
1,020,958	-		DZA65_RS04925	0.24	-0.4
1,020,958	-		DZA65_RS04925	0.24	-0.4
1,020,958	-		DZA65_RS04925	0.24	+0.2
1,020,958	-		DZA65_RS04925	0.24	-1.0
1,020,958	-		DZA65_RS04925	0.24	-0.3
1,021,011	+		DZA65_RS04925	0.27	-1.0
1,021,011	+		DZA65_RS04925	0.27	-0.9
1,021,011	+		DZA65_RS04925	0.27	-0.1
1,021,011	+		DZA65_RS04925	0.27	+0.2
1,021,011	+		DZA65_RS04925	0.27	+0.6
1,021,011	+		DZA65_RS04925	0.27	-0.6
1,021,011	+		DZA65_RS04925	0.27	-0.4
1,021,011	+		DZA65_RS04925	0.27	+0.2
1,021,012	-		DZA65_RS04925	0.27	-0.6
1,021,012	-		DZA65_RS04925	0.27	-1.5
1,021,012	-		DZA65_RS04925	0.27	-0.4
1,021,012	-		DZA65_RS04925	0.27	+0.7
1,021,012	-		DZA65_RS04925	0.27	+3.9
1,021,012	-		DZA65_RS04925	0.27	-0.8
1,021,012	-		DZA65_RS04925	0.27	+1.9
1,021,012	-		DZA65_RS04925	0.27	+0.3
1,021,060	+		DZA65_RS04925	0.31	+1.7
1,021,060	+		DZA65_RS04925	0.31	-2.0
1,021,061	-		DZA65_RS04925	0.31	-1.7
1,021,061	-		DZA65_RS04925	0.31	+0.8
1,021,061	-		DZA65_RS04925	0.31	-0.0
1,021,073	+		DZA65_RS04925	0.31	-1.1
1,021,074	-		DZA65_RS04925	0.31	+2.0