Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04305 and DZA65_RS04310 are separated by 240 nucleotides DZA65_RS04310 and DZA65_RS04315 are separated by 91 nucleotides DZA65_RS04315 and DZA65_RS04320 are separated by 15 nucleotides
DZA65_RS04305: DZA65_RS04305 - cytosine permease, at 897,890 to 899,185
_RS04305
DZA65_RS04310: DZA65_RS04310 - Dyp-type peroxidase, at 899,426 to 900,325
_RS04310
DZA65_RS04315: DZA65_RS04315 - cysteine synthase CysM, at 900,417 to 901,298
_RS04315
DZA65_RS04320: DZA65_RS04320 - MacB family efflux pump subunit, at 901,314 to 903,260
_RS04320
Position (kb) 899
900
901 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 898.468 kb on + strand, within DZA65_RS04305 at 898.469 kb on - strand, within DZA65_RS04305 at 898.469 kb on - strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.492 kb on + strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.493 kb on - strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.510 kb on + strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.511 kb on - strand, within DZA65_RS04305 at 898.547 kb on + strand, within DZA65_RS04305 at 898.547 kb on + strand, within DZA65_RS04305 at 898.548 kb on - strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.669 kb on + strand, within DZA65_RS04305 at 898.670 kb on - strand, within DZA65_RS04305 at 898.670 kb on - strand, within DZA65_RS04305 at 898.713 kb on + strand, within DZA65_RS04305 at 898.749 kb on - strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.808 kb on + strand, within DZA65_RS04305 at 898.809 kb on - strand, within DZA65_RS04305 at 898.809 kb on - strand, within DZA65_RS04305 at 898.837 kb on + strand, within DZA65_RS04305 at 898.838 kb on - strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.943 kb on + strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.944 kb on - strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.946 kb on + strand, within DZA65_RS04305 at 898.947 kb on - strand, within DZA65_RS04305 at 898.947 kb on - strand, within DZA65_RS04305 at 898.947 kb on - strand, within DZA65_RS04305 at 898.948 kb on + strand, within DZA65_RS04305 at 898.948 kb on + strand, within DZA65_RS04305 at 898.948 kb on + strand, within DZA65_RS04305 at 898.949 kb on - strand, within DZA65_RS04305 at 899.017 kb on + strand, within DZA65_RS04305 at 899.018 kb on - strand, within DZA65_RS04305 at 899.132 kb on + strand at 899.133 kb on - strand at 899.133 kb on - strand at 899.133 kb on - strand at 899.140 kb on + strand at 899.141 kb on - strand at 899.170 kb on + strand at 899.171 kb on - strand at 899.171 kb on - strand at 899.171 kb on - strand at 899.171 kb on - strand at 899.180 kb on - strand at 899.183 kb on + strand at 899.183 kb on + strand at 899.184 kb on - strand at 899.196 kb on + strand at 899.236 kb on - strand at 899.236 kb on - strand at 899.239 kb on + strand at 899.239 kb on + strand at 899.293 kb on + strand at 899.294 kb on - strand at 899.294 kb on - strand at 899.294 kb on - strand at 899.346 kb on + strand at 899.346 kb on + strand at 899.347 kb on - strand at 899.347 kb on - strand at 899.347 kb on - strand at 899.347 kb on - strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.348 kb on + strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.349 kb on - strand at 899.362 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.423 kb on + strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.424 kb on - strand at 899.447 kb on - strand at 899.488 kb on + strand at 899.493 kb on + strand at 899.493 kb on + strand at 899.494 kb on - strand at 899.527 kb on + strand, within DZA65_RS04310 at 899.527 kb on + strand, within DZA65_RS04310 at 899.527 kb on + strand, within DZA65_RS04310 at 899.527 kb on + strand, within DZA65_RS04310 at 899.929 kb on + strand, within DZA65_RS04310 at 899.930 kb on - strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.933 kb on + strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 899.934 kb on - strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.134 kb on + strand, within DZA65_RS04310 at 900.135 kb on - strand, within DZA65_RS04310 at 900.135 kb on - strand, within DZA65_RS04310 at 900.164 kb on + strand, within DZA65_RS04310 at 900.164 kb on + strand, within DZA65_RS04310 at 900.165 kb on - strand, within DZA65_RS04310 at 900.177 kb on - strand, within DZA65_RS04310 at 900.191 kb on + strand, within DZA65_RS04310 at 900.192 kb on - strand, within DZA65_RS04310 at 900.192 kb on - strand, within DZA65_RS04310 at 900.192 kb on - strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.217 kb on + strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.218 kb on - strand, within DZA65_RS04310 at 900.250 kb on + strand at 900.250 kb on + strand at 900.284 kb on + strand at 900.285 kb on - strand at 900.315 kb on + strand at 900.321 kb on + strand at 900.321 kb on + strand at 900.322 kb on - strand at 900.323 kb on + strand at 900.324 kb on - strand at 900.338 kb on + strand at 900.338 kb on + strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.339 kb on - strand at 900.342 kb on + strand at 900.342 kb on + strand at 900.343 kb on - strand at 900.463 kb on + strand at 900.463 kb on + strand at 900.463 kb on + strand at 900.464 kb on - strand at 900.603 kb on - strand, within DZA65_RS04315 at 900.698 kb on + strand, within DZA65_RS04315 at 900.699 kb on - strand, within DZA65_RS04315 at 900.699 kb on - strand, within DZA65_RS04315 at 900.699 kb on - strand, within DZA65_RS04315 at 900.732 kb on + strand, within DZA65_RS04315 at 900.732 kb on + strand, within DZA65_RS04315 at 900.990 kb on - strand, within DZA65_RS04315 at 900.990 kb on - strand, within DZA65_RS04315 at 900.998 kb on + strand, within DZA65_RS04315 at 900.999 kb on - strand, within DZA65_RS04315 at 901.034 kb on - strand, within DZA65_RS04315 at 901.062 kb on + strand, within DZA65_RS04315 at 901.063 kb on - strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.109 kb on + strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.110 kb on - strand, within DZA65_RS04315 at 901.272 kb on + strand at 901.315 kb on + strand at 901.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 898,468 + DZA65_RS04305 0.45 -0.9 898,469 - DZA65_RS04305 0.45 -0.1 898,469 - DZA65_RS04305 0.45 +0.7 898,492 + DZA65_RS04305 0.46 -0.2 898,492 + DZA65_RS04305 0.46 -0.1 898,492 + DZA65_RS04305 0.46 -0.4 898,493 - DZA65_RS04305 0.47 -0.9 898,493 - DZA65_RS04305 0.47 -0.2 898,493 - DZA65_RS04305 0.47 -1.1 898,493 - DZA65_RS04305 0.47 +1.6 898,493 - DZA65_RS04305 0.47 +0.9 898,510 + DZA65_RS04305 0.48 -1.1 898,510 + DZA65_RS04305 0.48 -1.6 898,510 + DZA65_RS04305 0.48 -0.4 898,510 + DZA65_RS04305 0.48 -2.0 898,510 + DZA65_RS04305 0.48 +1.4 898,510 + DZA65_RS04305 0.48 +0.1 898,510 + DZA65_RS04305 0.48 +0.1 898,510 + DZA65_RS04305 0.48 -0.6 898,511 - DZA65_RS04305 0.48 -0.3 898,511 - DZA65_RS04305 0.48 +0.4 898,511 - DZA65_RS04305 0.48 +0.4 898,547 + DZA65_RS04305 0.51 +1.7 898,547 + DZA65_RS04305 0.51 +0.6 898,548 - DZA65_RS04305 0.51 -0.6 898,669 + DZA65_RS04305 0.60 -1.2 898,669 + DZA65_RS04305 0.60 +1.6 898,669 + DZA65_RS04305 0.60 +1.2 898,669 + DZA65_RS04305 0.60 -0.4 898,670 - DZA65_RS04305 0.60 -0.3 898,670 - DZA65_RS04305 0.60 -1.0 898,713 + DZA65_RS04305 0.64 +0.4 898,749 - DZA65_RS04305 0.66 +0.7 898,808 + DZA65_RS04305 0.71 +0.5 898,808 + DZA65_RS04305 0.71 +0.4 898,808 + DZA65_RS04305 0.71 -0.5 898,809 - DZA65_RS04305 0.71 +0.9 898,809 - DZA65_RS04305 0.71 -0.6 898,837 + DZA65_RS04305 0.73 -0.8 898,838 - DZA65_RS04305 0.73 -0.2 898,943 + DZA65_RS04305 0.81 +1.5 898,943 + DZA65_RS04305 0.81 +0.6 898,943 + DZA65_RS04305 0.81 +0.9 898,943 + DZA65_RS04305 0.81 +1.1 898,943 + DZA65_RS04305 0.81 -1.5 898,943 + DZA65_RS04305 0.81 -0.2 898,944 - DZA65_RS04305 0.81 -0.3 898,944 - DZA65_RS04305 0.81 -0.5 898,944 - DZA65_RS04305 0.81 -0.7 898,944 - DZA65_RS04305 0.81 -2.0 898,944 - DZA65_RS04305 0.81 -0.4 898,944 - DZA65_RS04305 0.81 -2.5 898,944 - DZA65_RS04305 0.81 -2.5 898,944 - DZA65_RS04305 0.81 -1.3 898,944 - DZA65_RS04305 0.81 +0.0 898,944 - DZA65_RS04305 0.81 -0.6 898,946 + DZA65_RS04305 0.81 +0.4 898,946 + DZA65_RS04305 0.81 +0.6 898,946 + DZA65_RS04305 0.81 -0.6 898,946 + DZA65_RS04305 0.81 +0.4 898,946 + DZA65_RS04305 0.81 -0.2 898,946 + DZA65_RS04305 0.81 -0.7 898,947 - DZA65_RS04305 0.82 -2.0 898,947 - DZA65_RS04305 0.82 +0.7 898,947 - DZA65_RS04305 0.82 +1.3 898,948 + DZA65_RS04305 0.82 -0.5 898,948 + DZA65_RS04305 0.82 +0.2 898,948 + DZA65_RS04305 0.82 -0.1 898,949 - DZA65_RS04305 0.82 -0.4 899,017 + DZA65_RS04305 0.87 +0.4 899,018 - DZA65_RS04305 0.87 -0.2 899,132 + +0.4 899,133 - +0.3 899,133 - -0.1 899,133 - -0.1 899,140 + -2.6 899,141 - -0.6 899,170 + -0.9 899,171 - -0.1 899,171 - -0.8 899,171 - -0.8 899,171 - -0.6 899,180 - +1.2 899,183 + -0.4 899,183 + +1.5 899,184 - +1.9 899,196 + +0.4 899,236 - -0.9 899,236 - +1.9 899,239 + +0.1 899,239 + +0.5 899,293 + -1.2 899,294 - -2.8 899,294 - -1.0 899,294 - +0.1 899,346 + -0.5 899,346 + -0.3 899,347 - -0.6 899,347 - -4.1 899,347 - -0.1 899,347 - -0.3 899,348 + +0.4 899,348 + -0.1 899,348 + +0.2 899,348 + -1.2 899,348 + +0.0 899,348 + -2.2 899,348 + +0.5 899,349 - -1.6 899,349 - -4.2 899,349 - -2.2 899,349 - -3.3 899,349 - -2.5 899,349 - -2.0 899,349 - -2.6 899,362 + +0.9 899,423 + -2.2 899,423 + -2.6 899,423 + -2.5 899,423 + -1.2 899,423 + -1.8 899,423 + -1.2 899,424 - -3.3 899,424 - -0.6 899,424 - -1.7 899,424 - -2.2 899,424 - -2.5 899,424 - -2.2 899,424 - -1.2 899,447 - -2.9 899,488 + -2.2 899,493 + -0.6 899,493 + -2.8 899,494 - -3.0 899,527 + DZA65_RS04310 0.11 -2.2 899,527 + DZA65_RS04310 0.11 -2.6 899,527 + DZA65_RS04310 0.11 -2.4 899,527 + DZA65_RS04310 0.11 -4.6 899,929 + DZA65_RS04310 0.56 -1.6 899,930 - DZA65_RS04310 0.56 -1.2 899,933 + DZA65_RS04310 0.56 -2.6 899,933 + DZA65_RS04310 0.56 -2.0 899,933 + DZA65_RS04310 0.56 -4.2 899,933 + DZA65_RS04310 0.56 -3.0 899,933 + DZA65_RS04310 0.56 -3.0 899,933 + DZA65_RS04310 0.56 -3.0 899,933 + DZA65_RS04310 0.56 -2.8 899,933 + DZA65_RS04310 0.56 -3.0 899,933 + DZA65_RS04310 0.56 -3.1 899,933 + DZA65_RS04310 0.56 -2.5 899,933 + DZA65_RS04310 0.56 -2.2 899,933 + DZA65_RS04310 0.56 -2.0 899,933 + DZA65_RS04310 0.56 -0.6 899,933 + DZA65_RS04310 0.56 -2.0 899,933 + DZA65_RS04310 0.56 -2.2 899,933 + DZA65_RS04310 0.56 -2.2 899,933 + DZA65_RS04310 0.56 -0.1 899,933 + DZA65_RS04310 0.56 -2.2 899,934 - DZA65_RS04310 0.56 -1.1 899,934 - DZA65_RS04310 0.56 -3.6 899,934 - DZA65_RS04310 0.56 -2.5 899,934 - DZA65_RS04310 0.56 -3.0 899,934 - DZA65_RS04310 0.56 -4.9 899,934 - DZA65_RS04310 0.56 -2.5 899,934 - DZA65_RS04310 0.56 -1.2 899,934 - DZA65_RS04310 0.56 -2.2 899,934 - DZA65_RS04310 0.56 -1.2 900,134 + DZA65_RS04310 0.79 -3.9 900,134 + DZA65_RS04310 0.79 -3.5 900,134 + DZA65_RS04310 0.79 -0.6 900,134 + DZA65_RS04310 0.79 -2.6 900,135 - DZA65_RS04310 0.79 -2.5 900,135 - DZA65_RS04310 0.79 -1.2 900,164 + DZA65_RS04310 0.82 -1.4 900,164 + DZA65_RS04310 0.82 -2.2 900,165 - DZA65_RS04310 0.82 -3.0 900,177 - DZA65_RS04310 0.83 -3.6 900,191 + DZA65_RS04310 0.85 -3.9 900,192 - DZA65_RS04310 0.85 -0.3 900,192 - DZA65_RS04310 0.85 -3.2 900,192 - DZA65_RS04310 0.85 -3.7 900,217 + DZA65_RS04310 0.88 -1.6 900,217 + DZA65_RS04310 0.88 -2.2 900,217 + DZA65_RS04310 0.88 -3.5 900,217 + DZA65_RS04310 0.88 -3.6 900,218 - DZA65_RS04310 0.88 -1.2 900,218 - DZA65_RS04310 0.88 -1.2 900,218 - DZA65_RS04310 0.88 -2.5 900,218 - DZA65_RS04310 0.88 -4.2 900,218 - DZA65_RS04310 0.88 +0.1 900,250 + -2.2 900,250 + -3.1 900,284 + -1.2 900,285 - -0.2 900,315 + -2.0 900,321 + -1.2 900,321 + -0.4 900,322 - -6.3 900,323 + -0.5 900,324 - +0.4 900,338 + -1.6 900,338 + -1.8 900,339 - -1.1 900,339 - -1.6 900,339 - -0.1 900,339 - -0.6 900,339 - +0.9 900,342 + -1.6 900,342 + -1.1 900,343 - -1.2 900,463 + -1.4 900,463 + +0.8 900,463 + +1.4 900,464 - -1.2 900,603 - DZA65_RS04315 0.21 +0.4 900,698 + DZA65_RS04315 0.32 +0.2 900,699 - DZA65_RS04315 0.32 -0.1 900,699 - DZA65_RS04315 0.32 -2.5 900,699 - DZA65_RS04315 0.32 -0.8 900,732 + DZA65_RS04315 0.36 +0.4 900,732 + DZA65_RS04315 0.36 +0.2 900,990 - DZA65_RS04315 0.65 -0.6 900,990 - DZA65_RS04315 0.65 -0.8 900,998 + DZA65_RS04315 0.66 -0.7 900,999 - DZA65_RS04315 0.66 +0.1 901,034 - DZA65_RS04315 0.70 -0.9 901,062 + DZA65_RS04315 0.73 -1.2 901,063 - DZA65_RS04315 0.73 -0.3 901,109 + DZA65_RS04315 0.78 -0.9 901,109 + DZA65_RS04315 0.78 -2.6 901,109 + DZA65_RS04315 0.78 -1.4 901,109 + DZA65_RS04315 0.78 -1.0 901,109 + DZA65_RS04315 0.78 -2.1 901,109 + DZA65_RS04315 0.78 +0.1 901,109 + DZA65_RS04315 0.78 -0.6 901,109 + DZA65_RS04315 0.78 +0.4 901,110 - DZA65_RS04315 0.79 +3.2 901,110 - DZA65_RS04315 0.79 -0.4 901,110 - DZA65_RS04315 0.79 +0.4 901,110 - DZA65_RS04315 0.79 +0.1 901,110 - DZA65_RS04315 0.79 -0.2 901,272 + +0.1 901,315 + +1.1 901,316 - +1.1
Or see this region's nucleotide sequence