Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03960 and DZA65_RS03965 are separated by 10 nucleotides DZA65_RS03965 and DZA65_RS03970 overlap by 8 nucleotides DZA65_RS03970 and DZA65_RS03975 overlap by 10 nucleotides DZA65_RS03975 and DZA65_RS22805 are separated by 7 nucleotides DZA65_RS22805 and DZA65_RS03980 overlap by 4 nucleotides
DZA65_RS03960: DZA65_RS03960 - DNA primase, at 840,311 to 842,635
_RS03960
DZA65_RS03965: DZA65_RS03965 - hypothetical protein, at 842,646 to 842,858
_RS03965
DZA65_RS03970: DZA65_RS03970 - host cell division inhibitor Icd-like protein, at 842,851 to 843,048
_RS03970
DZA65_RS03975: DZA65_RS03975 - ash family protein, at 843,039 to 843,395
_RS03975
DZA65_RS22805: DZA65_RS22805 - hypothetical protein, at 843,403 to 843,549
_RS22805
DZA65_RS03980: DZA65_RS03980 - AlpA family transcriptional regulator, at 843,546 to 843,806
_RS03980
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 841.928 kb on - strand, within DZA65_RS03960 at 841.944 kb on + strand, within DZA65_RS03960 at 841.944 kb on + strand, within DZA65_RS03960 at 841.944 kb on + strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.945 kb on - strand, within DZA65_RS03960 at 841.952 kb on - strand, within DZA65_RS03960 at 841.968 kb on + strand, within DZA65_RS03960 at 841.969 kb on - strand, within DZA65_RS03960 at 841.989 kb on + strand, within DZA65_RS03960 at 841.989 kb on + strand, within DZA65_RS03960 at 841.989 kb on + strand, within DZA65_RS03960 at 842.008 kb on + strand, within DZA65_RS03960 at 842.008 kb on + strand, within DZA65_RS03960 at 842.066 kb on + strand, within DZA65_RS03960 at 842.138 kb on + strand, within DZA65_RS03960 at 842.139 kb on - strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.144 kb on + strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.145 kb on - strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.160 kb on + strand, within DZA65_RS03960 at 842.161 kb on - strand, within DZA65_RS03960 at 842.161 kb on - strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.165 kb on + strand, within DZA65_RS03960 at 842.166 kb on - strand, within DZA65_RS03960 at 842.166 kb on - strand, within DZA65_RS03960 at 842.196 kb on - strand, within DZA65_RS03960 at 842.196 kb on - strand, within DZA65_RS03960 at 842.196 kb on - strand at 842.196 kb on - strand, within DZA65_RS03960 at 842.205 kb on - strand, within DZA65_RS03960 at 842.239 kb on - strand, within DZA65_RS03960 at 842.257 kb on + strand, within DZA65_RS03960 at 842.258 kb on - strand, within DZA65_RS03960 at 842.459 kb on - strand at 842.623 kb on + strand at 842.623 kb on + strand at 842.623 kb on + strand at 842.624 kb on - strand at 842.624 kb on - strand at 842.624 kb on - strand at 842.705 kb on + strand, within DZA65_RS03965 at 842.730 kb on + strand, within DZA65_RS03965 at 842.730 kb on + strand, within DZA65_RS03965 at 842.731 kb on - strand, within DZA65_RS03965 at 842.731 kb on - strand, within DZA65_RS03965 at 842.731 kb on - strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.797 kb on + strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.798 kb on - strand, within DZA65_RS03965 at 842.823 kb on - strand, within DZA65_RS03965 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.903 kb on + strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.904 kb on - strand, within DZA65_RS03970 at 842.978 kb on - strand, within DZA65_RS03970 at 843.012 kb on + strand, within DZA65_RS03970 at 843.013 kb on - strand, within DZA65_RS03970 at 843.013 kb on - strand, within DZA65_RS03970 at 843.067 kb on + strand at 843.068 kb on - strand at 843.071 kb on + strand at 843.071 kb on + strand at 843.071 kb on + strand at 843.072 kb on - strand at 843.072 kb on - strand at 843.081 kb on - strand, within DZA65_RS03975 at 843.111 kb on - strand, within DZA65_RS03975 at 843.131 kb on - strand, within DZA65_RS03975 at 843.185 kb on + strand, within DZA65_RS03975 at 843.186 kb on - strand, within DZA65_RS03975 at 843.186 kb on - strand, within DZA65_RS03975 at 843.186 kb on - strand at 843.207 kb on + strand, within DZA65_RS03975 at 843.207 kb on + strand, within DZA65_RS03975 at 843.208 kb on - strand, within DZA65_RS03975 at 843.208 kb on - strand, within DZA65_RS03975 at 843.238 kb on - strand, within DZA65_RS03975 at 843.313 kb on - strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.338 kb on + strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.339 kb on - strand, within DZA65_RS03975 at 843.380 kb on + strand at 843.381 kb on - strand at 843.444 kb on - strand, within DZA65_RS22805 at 843.534 kb on + strand, within DZA65_RS22805 at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.538 kb on + strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.539 kb on - strand at 843.680 kb on - strand, within DZA65_RS03980 at 843.699 kb on - strand, within DZA65_RS03980 at 843.859 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.866 kb on + strand at 843.867 kb on - strand at 843.867 kb on - strand at 843.874 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.877 kb on + strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.878 kb on - strand at 843.885 kb on + strand at 843.947 kb on + strand at 843.973 kb on + strand at 843.974 kb on - strand at 843.984 kb on - strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.985 kb on + strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.986 kb on - strand at 843.997 kb on - strand at 844.020 kb on - strand at 844.029 kb on + strand at 844.030 kb on - strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.033 kb on + strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.034 kb on - strand at 844.035 kb on + strand at 844.036 kb on - strand at 844.036 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 841,928 - DZA65_RS03960 0.70 +0.2 841,944 + DZA65_RS03960 0.70 +1.2 841,944 + DZA65_RS03960 0.70 +0.8 841,944 + DZA65_RS03960 0.70 -2.0 841,945 - DZA65_RS03960 0.70 -0.6 841,945 - DZA65_RS03960 0.70 -0.8 841,945 - DZA65_RS03960 0.70 -0.3 841,945 - DZA65_RS03960 0.70 +0.6 841,945 - DZA65_RS03960 0.70 -0.8 841,945 - DZA65_RS03960 0.70 +0.9 841,945 - DZA65_RS03960 0.70 -0.3 841,952 - DZA65_RS03960 0.71 +0.5 841,968 + DZA65_RS03960 0.71 +3.2 841,969 - DZA65_RS03960 0.71 -0.6 841,989 + DZA65_RS03960 0.72 -0.2 841,989 + DZA65_RS03960 0.72 -0.2 841,989 + DZA65_RS03960 0.72 +0.7 842,008 + DZA65_RS03960 0.73 +2.2 842,008 + DZA65_RS03960 0.73 +1.1 842,066 + DZA65_RS03960 0.75 +0.4 842,138 + DZA65_RS03960 0.79 +1.2 842,139 - DZA65_RS03960 0.79 -0.5 842,144 + DZA65_RS03960 0.79 +0.3 842,144 + DZA65_RS03960 0.79 -1.3 842,144 + DZA65_RS03960 0.79 -0.6 842,144 + DZA65_RS03960 0.79 -0.6 842,144 + DZA65_RS03960 0.79 -1.6 842,145 - DZA65_RS03960 0.79 -1.6 842,145 - DZA65_RS03960 0.79 +0.4 842,145 - DZA65_RS03960 0.79 +1.2 842,145 - DZA65_RS03960 0.79 +0.4 842,145 - DZA65_RS03960 0.79 -0.4 842,145 - DZA65_RS03960 0.79 -0.3 842,145 - DZA65_RS03960 0.79 -0.3 842,145 - DZA65_RS03960 0.79 +0.1 842,145 - DZA65_RS03960 0.79 -1.2 842,145 - DZA65_RS03960 0.79 +0.4 842,145 - DZA65_RS03960 0.79 -0.4 842,160 + DZA65_RS03960 0.80 -1.1 842,160 + DZA65_RS03960 0.80 -0.9 842,160 + DZA65_RS03960 0.80 +0.2 842,160 + DZA65_RS03960 0.80 +0.0 842,161 - DZA65_RS03960 0.80 -0.1 842,161 - DZA65_RS03960 0.80 +0.4 842,165 + DZA65_RS03960 0.80 -0.4 842,165 + DZA65_RS03960 0.80 -0.4 842,165 + DZA65_RS03960 0.80 +0.8 842,165 + DZA65_RS03960 0.80 -0.1 842,165 + DZA65_RS03960 0.80 -0.4 842,165 + DZA65_RS03960 0.80 -0.8 842,166 - DZA65_RS03960 0.80 -0.9 842,166 - DZA65_RS03960 0.80 -1.7 842,196 - DZA65_RS03960 0.81 +0.9 842,196 - DZA65_RS03960 0.81 +0.1 842,196 - +0.7 842,196 - DZA65_RS03960 0.81 -0.6 842,205 - DZA65_RS03960 0.81 -0.3 842,239 - DZA65_RS03960 0.83 -0.8 842,257 + DZA65_RS03960 0.84 -0.9 842,258 - DZA65_RS03960 0.84 -1.0 842,459 - +0.3 842,623 + +0.4 842,623 + +1.0 842,623 + -1.8 842,624 - +0.6 842,624 - -0.3 842,624 - +0.7 842,705 + DZA65_RS03965 0.28 +0.7 842,730 + DZA65_RS03965 0.39 -0.7 842,730 + DZA65_RS03965 0.39 -0.0 842,731 - DZA65_RS03965 0.40 +0.6 842,731 - DZA65_RS03965 0.40 -0.6 842,731 - DZA65_RS03965 0.40 +0.6 842,797 + DZA65_RS03965 0.71 +0.4 842,797 + DZA65_RS03965 0.71 -2.6 842,797 + DZA65_RS03965 0.71 -0.1 842,797 + DZA65_RS03965 0.71 +0.4 842,797 + DZA65_RS03965 0.71 +0.1 842,797 + DZA65_RS03965 0.71 +0.4 842,798 - DZA65_RS03965 0.71 +0.1 842,798 - DZA65_RS03965 0.71 -1.0 842,798 - DZA65_RS03965 0.71 -0.9 842,798 - DZA65_RS03965 0.71 +2.7 842,798 - DZA65_RS03965 0.71 +0.1 842,798 - DZA65_RS03965 0.71 +0.4 842,823 - DZA65_RS03965 0.83 -1.1 842,903 + DZA65_RS03970 0.26 +0.9 842,903 + DZA65_RS03970 0.26 +2.1 842,903 + DZA65_RS03970 0.26 -1.6 842,903 + DZA65_RS03970 0.26 -0.1 842,903 + DZA65_RS03970 0.26 +0.1 842,904 - DZA65_RS03970 0.27 -1.6 842,904 - DZA65_RS03970 0.27 +0.8 842,904 - DZA65_RS03970 0.27 -0.6 842,904 - DZA65_RS03970 0.27 +0.2 842,904 - DZA65_RS03970 0.27 +0.1 842,904 - DZA65_RS03970 0.27 -1.6 842,904 - DZA65_RS03970 0.27 +0.5 842,904 - DZA65_RS03970 0.27 -1.2 842,978 - DZA65_RS03970 0.64 +0.2 843,012 + DZA65_RS03970 0.81 +0.0 843,013 - DZA65_RS03970 0.82 -2.0 843,013 - DZA65_RS03970 0.82 +1.4 843,067 + -0.1 843,068 - +0.6 843,071 + -1.0 843,071 + +1.6 843,071 + +0.9 843,072 - +1.0 843,072 - +0.6 843,081 - DZA65_RS03975 0.12 +0.5 843,111 - DZA65_RS03975 0.20 -1.6 843,131 - DZA65_RS03975 0.26 -0.2 843,185 + DZA65_RS03975 0.41 +1.1 843,186 - DZA65_RS03975 0.41 +1.1 843,186 - DZA65_RS03975 0.41 -0.2 843,186 - +1.4 843,207 + DZA65_RS03975 0.47 +0.9 843,207 + DZA65_RS03975 0.47 -0.4 843,208 - DZA65_RS03975 0.47 -0.8 843,208 - DZA65_RS03975 0.47 -0.2 843,238 - DZA65_RS03975 0.56 -0.2 843,313 - DZA65_RS03975 0.77 -0.3 843,338 + DZA65_RS03975 0.84 -2.0 843,338 + DZA65_RS03975 0.84 +0.4 843,338 + DZA65_RS03975 0.84 +0.4 843,338 + DZA65_RS03975 0.84 -1.2 843,338 + DZA65_RS03975 0.84 +1.2 843,338 + DZA65_RS03975 0.84 -0.1 843,338 + DZA65_RS03975 0.84 +1.4 843,338 + DZA65_RS03975 0.84 +0.0 843,338 + DZA65_RS03975 0.84 +0.6 843,338 + DZA65_RS03975 0.84 -1.0 843,338 + DZA65_RS03975 0.84 +0.2 843,338 + DZA65_RS03975 0.84 -0.3 843,338 + DZA65_RS03975 0.84 -0.9 843,339 - DZA65_RS03975 0.84 +0.4 843,339 - DZA65_RS03975 0.84 +1.6 843,339 - DZA65_RS03975 0.84 -0.4 843,339 - DZA65_RS03975 0.84 -0.2 843,339 - DZA65_RS03975 0.84 -0.2 843,339 - DZA65_RS03975 0.84 +1.7 843,339 - DZA65_RS03975 0.84 +0.5 843,339 - DZA65_RS03975 0.84 +0.1 843,339 - DZA65_RS03975 0.84 -0.3 843,380 + -0.7 843,381 - +0.2 843,444 - DZA65_RS22805 0.28 -0.4 843,534 + DZA65_RS22805 0.89 -0.6 843,538 + -2.6 843,538 + +0.3 843,538 + +0.5 843,538 + +0.1 843,538 + +0.2 843,538 + -0.4 843,538 + -1.0 843,538 + +0.6 843,538 + -0.9 843,538 + -0.2 843,539 - -1.1 843,539 - -0.2 843,539 - +0.9 843,539 - -1.0 843,539 - -1.0 843,539 - +0.4 843,680 - DZA65_RS03980 0.51 -0.1 843,699 - DZA65_RS03980 0.59 +1.8 843,859 + +0.0 843,866 + -0.4 843,866 + +0.5 843,866 + -1.1 843,867 - +0.8 843,867 - +0.6 843,874 + +0.4 843,877 + -1.2 843,877 + -1.0 843,877 + +0.9 843,877 + +0.3 843,877 + -1.1 843,877 + -0.6 843,877 + +0.0 843,878 - +0.5 843,878 - +0.4 843,878 - +0.4 843,878 - -0.4 843,878 - -0.3 843,878 - -0.6 843,878 - -0.1 843,878 - -0.6 843,878 - +0.1 843,885 + +1.0 843,947 + +1.9 843,973 + +0.2 843,974 - +0.4 843,984 - -1.9 843,985 + +0.7 843,985 + +0.8 843,985 + +0.4 843,985 + +0.8 843,985 + -0.1 843,985 + -1.1 843,986 - +0.5 843,986 - +1.2 843,986 - -0.1 843,986 - +0.5 843,986 - +0.5 843,986 - +0.4 843,986 - +0.0 843,997 - -0.8 844,020 - +0.3 844,029 + +0.4 844,030 - +0.4 844,033 + -0.2 844,033 + -0.6 844,033 + -2.2 844,034 - +1.0 844,034 - -0.1 844,034 - -1.6 844,034 - -1.2 844,035 + -0.2 844,036 - -1.4 844,036 - -0.8
Or see this region's nucleotide sequence