Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02550 and DZA65_RS02555 are separated by 61 nucleotides DZA65_RS02555 and DZA65_RS02560 overlap by 4 nucleotides DZA65_RS02560 and DZA65_RS02565 are separated by 104 nucleotides DZA65_RS02565 and DZA65_RS02570 are separated by 73 nucleotides
DZA65_RS02550: DZA65_RS02550 - ABC transporter ATP-binding protein, at 548,486 to 549,301
_RS02550
DZA65_RS02555: DZA65_RS02555 - ABC transporter substrate-binding protein, at 549,363 to 550,304
_RS02555
DZA65_RS02560: DZA65_RS02560 - iron ABC transporter permease, at 550,301 to 551,299
_RS02560
DZA65_RS02565: DZA65_RS02565 - alkyl hydroperoxide reductase subunit C, at 551,404 to 551,967
_RS02565
DZA65_RS02570: DZA65_RS02570 - alkyl hydroperoxide reductase subunit F, at 552,041 to 553,603
_RS02570
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.310 kb on + strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.311 kb on - strand at 549.314 kb on + strand at 549.314 kb on + strand at 549.315 kb on - strand at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.621 kb on + strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.622 kb on - strand, within DZA65_RS02555 at 549.681 kb on + strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.682 kb on - strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.729 kb on + strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.730 kb on - strand, within DZA65_RS02555 at 549.745 kb on + strand, within DZA65_RS02555 at 549.746 kb on - strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.764 kb on + strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.765 kb on - strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.805 kb on + strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.806 kb on - strand, within DZA65_RS02555 at 549.811 kb on - strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.937 kb on + strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.938 kb on - strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.945 kb on + strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.946 kb on - strand, within DZA65_RS02555 at 549.962 kb on + strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.963 kb on - strand, within DZA65_RS02555 at 549.972 kb on - strand, within DZA65_RS02555 at 549.985 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.207 kb on - strand, within DZA65_RS02555 at 550.221 kb on + strand at 550.222 kb on - strand at 550.284 kb on + strand at 550.284 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.319 kb on + strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.320 kb on - strand at 550.341 kb on + strand at 550.353 kb on + strand at 550.396 kb on + strand at 550.397 kb on - strand at 550.460 kb on + strand, within DZA65_RS02560 at 550.774 kb on + strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.775 kb on - strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.805 kb on + strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 550.806 kb on - strand, within DZA65_RS02560 at 551.298 kb on - strand at 551.302 kb on - strand at 551.319 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.341 kb on + strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.342 kb on - strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.361 kb on + strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.362 kb on - strand at 551.382 kb on + strand at 551.382 kb on + strand at 551.382 kb on + strand at 551.382 kb on + strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.383 kb on - strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.389 kb on + strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.390 kb on - strand at 551.418 kb on + strand at 551.419 kb on - strand at 551.419 kb on - strand at 551.421 kb on + strand at 551.518 kb on + strand, within DZA65_RS02565 at 551.532 kb on + strand, within DZA65_RS02565 at 551.533 kb on - strand, within DZA65_RS02565 at 551.575 kb on + strand, within DZA65_RS02565 at 551.575 kb on + strand, within DZA65_RS02565 at 551.575 kb on + strand, within DZA65_RS02565 at 551.576 kb on - strand, within DZA65_RS02565 at 551.601 kb on - strand, within DZA65_RS02565 at 551.601 kb on - strand, within DZA65_RS02565 at 551.608 kb on + strand, within DZA65_RS02565 at 551.608 kb on + strand, within DZA65_RS02565 at 551.608 kb on + strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.609 kb on - strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.634 kb on + strand, within DZA65_RS02565 at 551.635 kb on - strand, within DZA65_RS02565 at 551.635 kb on - strand, within DZA65_RS02565 at 551.684 kb on - strand, within DZA65_RS02565 at 551.684 kb on - strand, within DZA65_RS02565 at 551.684 kb on - strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.872 kb on + strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 551.873 kb on - strand, within DZA65_RS02565 at 552.035 kb on + strand at 552.040 kb on + strand at 552.040 kb on + strand at 552.040 kb on + strand at 552.041 kb on - strand at 552.041 kb on - strand at 552.041 kb on - strand at 552.041 kb on - strand at 552.052 kb on + strand at 552.077 kb on + strand at 552.077 kb on + strand at 552.077 kb on + strand at 552.078 kb on - strand at 552.109 kb on - strand at 552.109 kb on - strand at 552.213 kb on + strand at 552.223 kb on + strand, within DZA65_RS02570 at 552.223 kb on + strand, within DZA65_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 549,310 + -0.2 549,310 + +0.4 549,310 + +0.4 549,310 + -1.9 549,310 + +0.9 549,310 + -0.6 549,310 + -0.4 549,310 + +0.9 549,310 + +0.9 549,310 + +0.2 549,310 + -1.0 549,310 + +1.7 549,310 + +0.4 549,310 + -0.6 549,310 + -1.9 549,311 - -0.6 549,311 - -1.4 549,311 - +0.2 549,311 - +1.1 549,311 - +0.3 549,311 - +2.0 549,311 - -0.2 549,311 - -1.4 549,311 - +0.8 549,311 - +0.1 549,311 - +1.0 549,311 - -0.4 549,311 - +1.0 549,311 - +0.4 549,314 + +1.1 549,314 + +0.9 549,315 - +0.9 549,621 + DZA65_RS02555 0.27 -0.3 549,621 + DZA65_RS02555 0.27 +1.1 549,621 + DZA65_RS02555 0.27 -1.9 549,622 - DZA65_RS02555 0.27 +1.7 549,622 - DZA65_RS02555 0.27 -0.2 549,681 + DZA65_RS02555 0.34 +0.2 549,682 - DZA65_RS02555 0.34 +0.9 549,682 - DZA65_RS02555 0.34 +0.4 549,682 - DZA65_RS02555 0.34 +0.9 549,682 - DZA65_RS02555 0.34 +0.4 549,682 - DZA65_RS02555 0.34 +0.4 549,682 - DZA65_RS02555 0.34 +0.2 549,682 - DZA65_RS02555 0.34 -0.8 549,682 - DZA65_RS02555 0.34 -0.4 549,729 + DZA65_RS02555 0.39 -2.5 549,729 + DZA65_RS02555 0.39 -0.0 549,729 + DZA65_RS02555 0.39 +0.2 549,730 - DZA65_RS02555 0.39 -0.6 549,730 - DZA65_RS02555 0.39 -1.3 549,745 + DZA65_RS02555 0.41 -1.2 549,746 - DZA65_RS02555 0.41 -0.3 549,764 + DZA65_RS02555 0.43 -0.0 549,764 + DZA65_RS02555 0.43 +0.0 549,764 + DZA65_RS02555 0.43 -0.5 549,764 + DZA65_RS02555 0.43 +1.9 549,765 - DZA65_RS02555 0.43 -0.9 549,765 - DZA65_RS02555 0.43 +0.7 549,765 - DZA65_RS02555 0.43 +1.5 549,765 - DZA65_RS02555 0.43 -0.1 549,805 + DZA65_RS02555 0.47 +0.4 549,805 + DZA65_RS02555 0.47 -1.9 549,805 + DZA65_RS02555 0.47 +1.4 549,805 + DZA65_RS02555 0.47 +0.0 549,805 + DZA65_RS02555 0.47 -0.2 549,806 - DZA65_RS02555 0.47 +0.6 549,806 - DZA65_RS02555 0.47 -0.0 549,806 - DZA65_RS02555 0.47 -2.2 549,806 - DZA65_RS02555 0.47 +0.2 549,806 - DZA65_RS02555 0.47 -0.3 549,806 - DZA65_RS02555 0.47 -0.5 549,806 - DZA65_RS02555 0.47 -1.3 549,806 - DZA65_RS02555 0.47 -1.2 549,806 - DZA65_RS02555 0.47 -1.6 549,811 - DZA65_RS02555 0.48 -1.2 549,937 + DZA65_RS02555 0.61 +0.2 549,937 + DZA65_RS02555 0.61 +1.0 549,937 + DZA65_RS02555 0.61 -1.2 549,937 + DZA65_RS02555 0.61 +1.6 549,937 + DZA65_RS02555 0.61 +0.0 549,938 - DZA65_RS02555 0.61 -1.8 549,938 - DZA65_RS02555 0.61 -0.4 549,938 - DZA65_RS02555 0.61 +0.2 549,938 - DZA65_RS02555 0.61 -0.4 549,938 - DZA65_RS02555 0.61 -0.3 549,945 + DZA65_RS02555 0.62 -1.3 549,945 + DZA65_RS02555 0.62 +0.7 549,946 - DZA65_RS02555 0.62 +1.1 549,946 - DZA65_RS02555 0.62 +0.7 549,962 + DZA65_RS02555 0.64 -1.0 549,963 - DZA65_RS02555 0.64 +0.2 549,963 - DZA65_RS02555 0.64 -0.2 549,963 - DZA65_RS02555 0.64 +1.2 549,972 - DZA65_RS02555 0.65 +0.2 549,985 - DZA65_RS02555 0.66 -0.7 550,207 - DZA65_RS02555 0.90 -1.3 550,207 - DZA65_RS02555 0.90 -0.5 550,207 - DZA65_RS02555 0.90 -0.6 550,221 + -0.6 550,222 - +0.7 550,284 + +0.5 550,284 + -0.4 550,319 + +0.0 550,319 + -0.0 550,319 + +0.9 550,320 - -1.9 550,320 - +1.0 550,320 - +0.7 550,320 - +0.4 550,320 - -0.3 550,341 + +3.0 550,353 + -0.0 550,396 + -0.3 550,397 - -0.4 550,460 + DZA65_RS02560 0.16 -0.6 550,774 + DZA65_RS02560 0.47 +2.0 550,775 - DZA65_RS02560 0.47 -0.9 550,775 - DZA65_RS02560 0.47 +1.3 550,805 + DZA65_RS02560 0.50 -0.0 550,805 + DZA65_RS02560 0.50 +1.0 550,805 + DZA65_RS02560 0.50 -1.5 550,805 + DZA65_RS02560 0.50 -2.0 550,805 + DZA65_RS02560 0.50 +0.8 550,805 + DZA65_RS02560 0.50 +1.5 550,806 - DZA65_RS02560 0.51 +0.8 550,806 - DZA65_RS02560 0.51 -1.4 551,298 - +1.1 551,302 - +0.4 551,319 + -1.3 551,341 + +0.6 551,341 + -0.4 551,341 + +1.0 551,341 + +2.0 551,341 + -1.1 551,341 + -0.3 551,342 - +0.2 551,342 - -0.2 551,342 - +0.7 551,342 - -0.0 551,342 - -1.1 551,342 - +0.4 551,342 - -0.3 551,361 + -1.0 551,361 + -0.4 551,361 + +2.0 551,361 + +0.9 551,361 + -0.6 551,362 - -0.1 551,362 - -0.1 551,362 - -1.6 551,362 - -2.9 551,362 - -0.7 551,362 - -1.0 551,362 - +0.4 551,382 + +0.9 551,382 + -0.9 551,382 + -0.3 551,382 + +0.0 551,383 - -2.6 551,383 - -1.0 551,383 - -1.0 551,383 - -0.6 551,383 - -0.0 551,389 + -1.9 551,389 + +0.2 551,389 + +0.6 551,389 + +0.3 551,389 + +0.1 551,389 + +0.1 551,389 + +0.5 551,389 + +0.3 551,390 - -0.9 551,390 - -1.6 551,390 - -1.2 551,390 - -2.8 551,390 - +0.2 551,390 - -0.1 551,418 + +0.6 551,419 - -1.8 551,419 - -0.2 551,421 + -0.5 551,518 + DZA65_RS02565 0.20 -0.2 551,532 + DZA65_RS02565 0.23 +0.7 551,533 - DZA65_RS02565 0.23 +1.7 551,575 + DZA65_RS02565 0.30 -0.4 551,575 + DZA65_RS02565 0.30 -1.2 551,575 + DZA65_RS02565 0.30 -0.6 551,576 - DZA65_RS02565 0.30 -1.2 551,601 - DZA65_RS02565 0.35 -0.8 551,601 - DZA65_RS02565 0.35 +0.4 551,608 + DZA65_RS02565 0.36 -0.4 551,608 + DZA65_RS02565 0.36 -0.3 551,608 + DZA65_RS02565 0.36 -3.6 551,609 - DZA65_RS02565 0.36 -0.3 551,609 - DZA65_RS02565 0.36 -2.2 551,609 - DZA65_RS02565 0.36 -1.0 551,609 - DZA65_RS02565 0.36 -1.3 551,609 - DZA65_RS02565 0.36 -0.6 551,609 - DZA65_RS02565 0.36 -0.9 551,609 - DZA65_RS02565 0.36 -0.1 551,634 + DZA65_RS02565 0.41 +1.2 551,634 + DZA65_RS02565 0.41 +0.1 551,634 + DZA65_RS02565 0.41 -0.6 551,634 + DZA65_RS02565 0.41 -0.2 551,635 - DZA65_RS02565 0.41 +0.9 551,635 - DZA65_RS02565 0.41 +0.7 551,684 - DZA65_RS02565 0.50 +0.6 551,684 - DZA65_RS02565 0.50 -0.2 551,684 - DZA65_RS02565 0.50 -0.1 551,872 + DZA65_RS02565 0.83 +0.9 551,872 + DZA65_RS02565 0.83 -1.5 551,872 + DZA65_RS02565 0.83 -0.3 551,872 + DZA65_RS02565 0.83 -2.9 551,873 - DZA65_RS02565 0.83 -0.3 551,873 - DZA65_RS02565 0.83 -0.8 551,873 - DZA65_RS02565 0.83 -0.1 551,873 - DZA65_RS02565 0.83 +0.5 551,873 - DZA65_RS02565 0.83 -1.4 551,873 - DZA65_RS02565 0.83 +0.3 552,035 + +0.5 552,040 + -0.6 552,040 + -1.0 552,040 + -0.6 552,041 - -0.4 552,041 - -1.6 552,041 - -1.2 552,041 - -2.2 552,052 + +0.2 552,077 + -0.5 552,077 + -0.5 552,077 + -0.7 552,078 - -0.1 552,109 - -2.4 552,109 - -0.2 552,213 + -0.0 552,223 + DZA65_RS02570 0.12 +1.1 552,223 + DZA65_RS02570 0.12 -0.4
Or see this region's nucleotide sequence