Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00985

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS00975 and DZA65_RS00980 are separated by 3 nucleotidesDZA65_RS00980 and DZA65_RS00985 are separated by 113 nucleotidesDZA65_RS00985 and DZA65_RS00990 are separated by 2 nucleotides DZA65_RS00975: DZA65_RS00975 - Sec-independent protein translocase subunit TatB, at 223,030 to 223,602 _RS00975 DZA65_RS00980: DZA65_RS00980 - Sec-independent protein translocase subunit TatC, at 223,606 to 224,373 _RS00980 DZA65_RS00985: DZA65_RS00985 - 3'-5' ssDNA/RNA exonuclease TatD, at 224,487 to 225,281 _RS00985 DZA65_RS00990: DZA65_RS00990 - porphobilinogen synthase, at 225,284 to 226,306 _RS00990 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2 3at 223.568 kb on + strandat 223.568 kb on + strandat 223.569 kb on - strandat 223.569 kb on - strandat 223.569 kb on - strandat 223.600 kb on + strandat 223.600 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.605 kb on + strandat 223.606 kb on - strandat 223.606 kb on - strandat 223.671 kb on + strandat 223.671 kb on + strandat 223.671 kb on + strandat 223.672 kb on - strandat 223.672 kb on - strandat 223.677 kb on + strandat 223.677 kb on + strandat 223.677 kb on + strandat 223.678 kb on - strandat 223.711 kb on + strand, within DZA65_RS00980at 223.712 kb on - strand, within DZA65_RS00980at 223.729 kb on + strand, within DZA65_RS00980at 223.729 kb on + strandat 223.729 kb on + strand, within DZA65_RS00980at 223.780 kb on - strand, within DZA65_RS00980at 223.870 kb on + strand, within DZA65_RS00980at 223.870 kb on + strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.871 kb on - strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.903 kb on + strand, within DZA65_RS00980at 223.904 kb on - strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.960 kb on + strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.961 kb on - strand, within DZA65_RS00980at 223.962 kb on + strand, within DZA65_RS00980at 223.981 kb on + strand, within DZA65_RS00980at 224.007 kb on + strand, within DZA65_RS00980at 224.061 kb on + strand, within DZA65_RS00980at 224.061 kb on + strand, within DZA65_RS00980at 224.061 kb on + strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strandat 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.062 kb on - strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.065 kb on + strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.066 kb on - strand, within DZA65_RS00980at 224.189 kb on - strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.272 kb on + strand, within DZA65_RS00980at 224.273 kb on - strand, within DZA65_RS00980at 224.273 kb on - strandat 224.273 kb on - strand, within DZA65_RS00980at 224.273 kb on - strand, within DZA65_RS00980at 224.276 kb on + strandat 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.276 kb on + strand, within DZA65_RS00980at 224.277 kb on - strand, within DZA65_RS00980at 224.311 kb on + strandat 224.311 kb on + strandat 224.312 kb on - strandat 224.312 kb on - strandat 224.405 kb on + strandat 224.405 kb on + strandat 224.406 kb on - strandat 224.406 kb on - strandat 224.640 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.746 kb on + strand, within DZA65_RS00985at 224.894 kb on + strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.895 kb on - strand, within DZA65_RS00985at 224.921 kb on + strand, within DZA65_RS00985at 224.938 kb on + strand, within DZA65_RS00985at 225.066 kb on - strand, within DZA65_RS00985at 225.105 kb on + strand, within DZA65_RS00985at 225.113 kb on - strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.124 kb on + strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.125 kb on - strand, within DZA65_RS00985at 225.131 kb on + strand, within DZA65_RS00985at 225.131 kb on + strand, within DZA65_RS00985at 225.132 kb on - strand, within DZA65_RS00985at 225.132 kb on - strand, within DZA65_RS00985at 225.173 kb on + strand, within DZA65_RS00985at 225.174 kb on - strand, within DZA65_RS00985at 225.174 kb on - strand, within DZA65_RS00985

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
223,568 + -0.2
223,568 + -1.9
223,569 - +0.1
223,569 - +1.5
223,569 - -0.5
223,600 + -0.7
223,600 + -0.9
223,605 + +0.5
223,605 + +1.1
223,605 + -1.9
223,605 + +0.2
223,605 + +0.2
223,606 - +0.4
223,606 - -0.1
223,671 + +1.7
223,671 + +0.7
223,671 + -0.2
223,672 - +0.6
223,672 - -0.1
223,677 + -0.4
223,677 + +0.5
223,677 + -1.7
223,678 - +1.4
223,711 + DZA65_RS00980 0.14 -2.3
223,712 - DZA65_RS00980 0.14 -0.4
223,729 + DZA65_RS00980 0.16 -0.3
223,729 + -1.1
223,729 + DZA65_RS00980 0.16 -0.5
223,780 - DZA65_RS00980 0.23 +0.7
223,870 + DZA65_RS00980 0.34 -0.1
223,870 + DZA65_RS00980 0.34 +0.1
223,871 - DZA65_RS00980 0.35 +0.8
223,871 - DZA65_RS00980 0.35 +0.5
223,871 - DZA65_RS00980 0.35 -0.1
223,871 - DZA65_RS00980 0.35 +0.1
223,871 - DZA65_RS00980 0.35 +0.5
223,903 + DZA65_RS00980 0.39 +1.0
223,903 + DZA65_RS00980 0.39 -0.4
223,903 + DZA65_RS00980 0.39 +1.9
223,903 + DZA65_RS00980 0.39 +0.0
223,904 - DZA65_RS00980 0.39 +1.0
223,960 + DZA65_RS00980 0.46 +0.9
223,960 + DZA65_RS00980 0.46 +0.3
223,960 + DZA65_RS00980 0.46 +1.6
223,960 + DZA65_RS00980 0.46 +0.2
223,960 + DZA65_RS00980 0.46 +0.5
223,960 + DZA65_RS00980 0.46 -0.3
223,960 + DZA65_RS00980 0.46 +1.3
223,960 + DZA65_RS00980 0.46 -0.0
223,960 + DZA65_RS00980 0.46 +1.6
223,960 + DZA65_RS00980 0.46 +1.2
223,960 + DZA65_RS00980 0.46 -0.7
223,960 + DZA65_RS00980 0.46 -0.1
223,960 + DZA65_RS00980 0.46 +0.3
223,961 - DZA65_RS00980 0.46 +1.0
223,961 - DZA65_RS00980 0.46 -0.5
223,961 - DZA65_RS00980 0.46 +1.1
223,961 - DZA65_RS00980 0.46 +1.5
223,961 - DZA65_RS00980 0.46 -0.2
223,961 - DZA65_RS00980 0.46 +1.0
223,962 + DZA65_RS00980 0.46 -0.9
223,981 + DZA65_RS00980 0.49 -0.6
224,007 + DZA65_RS00980 0.52 +1.4
224,061 + DZA65_RS00980 0.59 +0.2
224,061 + DZA65_RS00980 0.59 +0.2
224,061 + DZA65_RS00980 0.59 +2.3
224,062 - DZA65_RS00980 0.59 -0.1
224,062 - DZA65_RS00980 0.59 -0.7
224,062 - +1.5
224,062 - DZA65_RS00980 0.59 +0.0
224,062 - DZA65_RS00980 0.59 -0.7
224,062 - DZA65_RS00980 0.59 -0.8
224,065 + DZA65_RS00980 0.60 +1.2
224,065 + DZA65_RS00980 0.60 +1.0
224,065 + DZA65_RS00980 0.60 +1.0
224,065 + DZA65_RS00980 0.60 -0.5
224,065 + DZA65_RS00980 0.60 -1.1
224,065 + DZA65_RS00980 0.60 +0.0
224,066 - DZA65_RS00980 0.60 +0.5
224,066 - DZA65_RS00980 0.60 +0.6
224,066 - DZA65_RS00980 0.60 +1.2
224,066 - DZA65_RS00980 0.60 +1.2
224,066 - DZA65_RS00980 0.60 +1.7
224,066 - DZA65_RS00980 0.60 -2.0
224,189 - DZA65_RS00980 0.76 -0.9
224,272 + DZA65_RS00980 0.87 +0.9
224,272 + DZA65_RS00980 0.87 -0.9
224,272 + DZA65_RS00980 0.87 +1.0
224,272 + DZA65_RS00980 0.87 -2.1
224,272 + DZA65_RS00980 0.87 -0.1
224,273 - DZA65_RS00980 0.87 -0.0
224,273 - +1.0
224,273 - DZA65_RS00980 0.87 +1.2
224,273 - DZA65_RS00980 0.87 -1.2
224,276 + -1.5
224,276 + DZA65_RS00980 0.87 +1.2
224,276 + DZA65_RS00980 0.87 +0.8
224,276 + DZA65_RS00980 0.87 +0.5
224,276 + DZA65_RS00980 0.87 -0.1
224,276 + DZA65_RS00980 0.87 +1.1
224,276 + DZA65_RS00980 0.87 +0.5
224,276 + DZA65_RS00980 0.87 +0.3
224,276 + DZA65_RS00980 0.87 +0.2
224,276 + DZA65_RS00980 0.87 +1.9
224,277 - DZA65_RS00980 0.87 +0.3
224,311 + -0.4
224,311 + +0.2
224,312 - -1.7
224,312 - -1.1
224,405 + -1.1
224,405 + +0.8
224,406 - +1.1
224,406 - -1.1
224,640 + DZA65_RS00985 0.19 -0.9
224,746 + DZA65_RS00985 0.33 -0.1
224,746 + DZA65_RS00985 0.33 -0.1
224,746 + DZA65_RS00985 0.33 +0.3
224,894 + DZA65_RS00985 0.51 -0.1
224,895 - DZA65_RS00985 0.51 -1.9
224,895 - DZA65_RS00985 0.51 +0.5
224,895 - DZA65_RS00985 0.51 -1.9
224,895 - DZA65_RS00985 0.51 -1.1
224,921 + DZA65_RS00985 0.55 -0.4
224,938 + DZA65_RS00985 0.57 +0.1
225,066 - DZA65_RS00985 0.73 -0.8
225,105 + DZA65_RS00985 0.78 +0.1
225,113 - DZA65_RS00985 0.79 -0.1
225,124 + DZA65_RS00985 0.80 +3.1
225,124 + DZA65_RS00985 0.80 +0.2
225,124 + DZA65_RS00985 0.80 +2.2
225,124 + DZA65_RS00985 0.80 -1.9
225,124 + DZA65_RS00985 0.80 -0.7
225,124 + DZA65_RS00985 0.80 -0.2
225,124 + DZA65_RS00985 0.80 +0.5
225,124 + DZA65_RS00985 0.80 +0.0
225,124 + DZA65_RS00985 0.80 -1.8
225,124 + DZA65_RS00985 0.80 -0.2
225,124 + DZA65_RS00985 0.80 +1.0
225,124 + DZA65_RS00985 0.80 +0.7
225,124 + DZA65_RS00985 0.80 +0.6
225,125 - DZA65_RS00985 0.80 +0.3
225,125 - DZA65_RS00985 0.80 +2.3
225,125 - DZA65_RS00985 0.80 +1.5
225,125 - DZA65_RS00985 0.80 +0.1
225,125 - DZA65_RS00985 0.80 +0.5
225,125 - DZA65_RS00985 0.80 +0.8
225,125 - DZA65_RS00985 0.80 +0.8
225,125 - DZA65_RS00985 0.80 -2.1
225,125 - DZA65_RS00985 0.80 -0.8
225,125 - DZA65_RS00985 0.80 -1.1
225,125 - DZA65_RS00985 0.80 -0.5
225,131 + DZA65_RS00985 0.81 -0.1
225,131 + DZA65_RS00985 0.81 +0.7
225,132 - DZA65_RS00985 0.81 -0.0
225,132 - DZA65_RS00985 0.81 -0.1
225,173 + DZA65_RS00985 0.86 -1.3
225,174 - DZA65_RS00985 0.86 -1.1
225,174 - DZA65_RS00985 0.86 -2.7

Or see this region's nucleotide sequence