Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00470

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
111,452	+	DZA65_RS00460	0.64	+0.0
111,452	+	DZA65_RS00460	0.64	+1.1
111,452	+	DZA65_RS00460	0.64	+1.0
111,452	+	DZA65_RS00460	0.64	+0.5
111,540	+	DZA65_RS00460	0.73	+1.4
111,540	+	DZA65_RS00460	0.73	-0.1
111,541	-	DZA65_RS00460	0.73	+2.2
111,541	-	DZA65_RS00460	0.73	+1.8
111,545	+	DZA65_RS00460	0.74	-0.5
111,545	+	DZA65_RS00460	0.74	-0.9
111,546	-	DZA65_RS00460	0.74	-0.1
111,663	+	DZA65_RS00460	0.86	+0.8
111,664	-	DZA65_RS00460	0.86	+0.6
111,690	+	DZA65_RS00460	0.89	+1.4
111,690	+	DZA65_RS00460	0.89	+0.5
111,690	+	DZA65_RS00460	0.89	+0.5
111,690	+	DZA65_RS00460	0.89	-0.1
111,690	+	DZA65_RS00460	0.89	+0.8
111,690	+	DZA65_RS00460	0.89	+0.6
111,690	+	DZA65_RS00460	0.89	+0.9
111,690	+	DZA65_RS00460	0.89	-0.6
111,690	+	DZA65_RS00460	0.89	+1.8
111,690	+	DZA65_RS00460	0.89	+1.4
111,690	+	DZA65_RS00460	0.89	+0.3
111,690	+	DZA65_RS00460	0.89	+1.3
111,690	+	DZA65_RS00460	0.89	-0.0
111,690	+	DZA65_RS00460	0.89	-0.3
111,690	+	DZA65_RS00460	0.89	+1.1
111,690	+			+0.1
111,690	+	DZA65_RS00460	0.89	+0.5
111,691	-	DZA65_RS00460	0.89	-3.1
111,691	-	DZA65_RS00460	0.89	-1.4
111,691	-	DZA65_RS00460	0.89	+0.6
111,691	-	DZA65_RS00460	0.89	+1.2
111,691	-	DZA65_RS00460	0.89	+0.3
111,691	-	DZA65_RS00460	0.89	+1.3
111,691	-	DZA65_RS00460	0.89	-0.9
111,691	-	DZA65_RS00460	0.89	+0.8
111,691	-	DZA65_RS00460	0.89	-0.1
111,691	-	DZA65_RS00460	0.89	+2.1
111,691	-	DZA65_RS00460	0.89	+0.6
111,691	-	DZA65_RS00460	0.89	-0.7
111,691	-	DZA65_RS00460	0.89	+0.5
111,691	-	DZA65_RS00460	0.89	+0.7
111,691	-	DZA65_RS00460	0.89	-0.4
111,691	-	DZA65_RS00460	0.89	+2.2
111,691	-	DZA65_RS00460	0.89	+1.3
111,691	-	DZA65_RS00460	0.89	+1.4
111,691	-	DZA65_RS00460	0.89	+0.6
111,692	+	DZA65_RS00460	0.90	+0.3
111,692	+	DZA65_RS00460	0.90	+1.3
111,692	+	DZA65_RS00460	0.90	+0.4
111,692	+	DZA65_RS00460	0.90	+4.2
111,692	+	DZA65_RS00460	0.90	+1.9
111,693	-	DZA65_RS00460	0.90	-0.6
111,693	-	DZA65_RS00460	0.90	-0.4
111,693	-	DZA65_RS00460	0.90	+2.1
111,741	+			+0.5
111,742	-			-0.5
111,742	-			+0.5
111,742	-			+0.8
111,742	-			+0.0
111,742	-			-2.8
111,742	-			+1.1
111,742	-			+1.9
111,742	-			+1.7
111,765	+			+0.4
111,765	+			+1.2
111,765	+			-0.7
111,766	-			+1.2
111,766	-			+1.0
111,766	-			-1.1
111,783	+			+0.5
111,783	+			+1.6
111,783	+			+0.6
111,783	+			+0.8
111,783	+			+2.4
111,783	+			+1.6
111,783	+			+0.6
111,784	-			+0.5
111,784	-			+0.5
111,784	-			+0.9
111,784	-			+0.4
111,865	+			-0.1
111,865	+			+0.7
111,865	+			+0.2
111,865	+			+0.4
111,865	+			+1.2
111,865	+			+0.5
111,865	+			+0.0
111,865	+			-0.3
111,866	-			+0.5
111,866	-			-0.9
111,866	-			-0.1
111,866	-			+0.1
111,866	-			-0.6
111,866	-			-1.5
111,866	-			+0.7
111,866	-			-0.3
111,892	+			+0.7
111,893	-			+0.2
111,949	+	DZA65_RS00465	0.17	+0.5
111,949	+	DZA65_RS00465	0.17	-0.1
111,950	-	DZA65_RS00465	0.17	-0.1
112,005	+	DZA65_RS00465	0.27	-1.1
112,036	+	DZA65_RS00465	0.34	+0.8
112,036	+	DZA65_RS00465	0.34	+1.2
112,057	+	DZA65_RS00465	0.38	+0.1
112,058	-	DZA65_RS00465	0.38	-0.0
112,058	-	DZA65_RS00465	0.38	+0.8
112,058	-	DZA65_RS00465	0.38	+1.4
112,058	-	DZA65_RS00465	0.38	+0.8
112,058	-	DZA65_RS00465	0.38	+0.3
112,075	-	DZA65_RS00465	0.41	-0.8
112,075	-	DZA65_RS00465	0.41	+0.5
112,105	+	DZA65_RS00465	0.47	+0.6
112,105	+	DZA65_RS00465	0.47	+0.5
112,105	+	DZA65_RS00465	0.47	+2.9
112,106	-	DZA65_RS00465	0.47	-0.4
112,106	-	DZA65_RS00465	0.47	+0.6
112,108	+	DZA65_RS00465	0.48	+0.6
112,108	+	DZA65_RS00465	0.48	+1.7
112,108	+	DZA65_RS00465	0.48	+0.7
112,108	+	DZA65_RS00465	0.48	+1.1
112,108	+	DZA65_RS00465	0.48	+1.4
112,108	+	DZA65_RS00465	0.48	+0.5
112,108	+	DZA65_RS00465	0.48	+0.6
112,108	+	DZA65_RS00465	0.48	+0.1
112,108	+	DZA65_RS00465	0.48	+1.7
112,108	+	DZA65_RS00465	0.48	+1.4
112,109	-	DZA65_RS00465	0.48	-0.2
112,109	-	DZA65_RS00465	0.48	-0.4
112,109	-	DZA65_RS00465	0.48	-2.7
112,109	-	DZA65_RS00465	0.48	-2.3
112,109	-	DZA65_RS00465	0.48	+0.0
112,109	-	DZA65_RS00465	0.48	+0.7
112,109	-	DZA65_RS00465	0.48	+0.5
112,114	+	DZA65_RS00465	0.49	+0.3
112,114	+	DZA65_RS00465	0.49	-1.5
112,114	+	DZA65_RS00465	0.49	+0.5
112,114	+	DZA65_RS00465	0.49	+1.2
112,114	+	DZA65_RS00465	0.49	+0.4
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+1.4
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+0.3
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+0.8
112,114	+	DZA65_RS00465	0.49	-0.3
112,114	+	DZA65_RS00465	0.49	+0.4
112,114	+	DZA65_RS00465	0.49	-0.9
112,114	+	DZA65_RS00465	0.49	+0.9
112,114	+	DZA65_RS00465	0.49	+1.2
112,114	+	DZA65_RS00465	0.49	+0.1
112,115	-	DZA65_RS00465	0.49	+0.4
112,115	-	DZA65_RS00465	0.49	-0.5
112,115	-	DZA65_RS00465	0.49	+0.9
112,115	-	DZA65_RS00465	0.49	-1.2
112,115	-	DZA65_RS00465	0.49	-0.1
112,115	-	DZA65_RS00465	0.49	+0.1
112,115	-	DZA65_RS00465	0.49	+0.5
112,115	-	DZA65_RS00465	0.49	-0.1
112,115	-	DZA65_RS00465	0.49	+0.3
112,115	-	DZA65_RS00465	0.49	-1.1
112,115	-	DZA65_RS00465	0.49	+0.6
112,115	-	DZA65_RS00465	0.49	+0.1
112,115	-	DZA65_RS00465	0.49	-0.9
112,115	-			+0.5
112,115	-	DZA65_RS00465	0.49	+0.5
112,115	-	DZA65_RS00465	0.49	-1.4
112,115	-	DZA65_RS00465	0.49	-0.3
112,115	-	DZA65_RS00465	0.49	+1.4
112,116	+	DZA65_RS00465	0.49	+1.0
112,116	+	DZA65_RS00465	0.49	-0.5
112,116	+	DZA65_RS00465	0.49	+0.5
112,116	+	DZA65_RS00465	0.49	+1.4
112,116	+	DZA65_RS00465	0.49	-0.7
112,116	+	DZA65_RS00465	0.49	+0.1
112,116	+	DZA65_RS00465	0.49	+0.0
112,117	-	DZA65_RS00465	0.49	+0.5
112,117	-	DZA65_RS00465	0.49	+0.7
112,117	-	DZA65_RS00465	0.49	+0.0
112,117	-	DZA65_RS00465	0.49	-0.5
112,117	-	DZA65_RS00465	0.49	+0.3
112,117	-	DZA65_RS00465	0.49	+1.3
112,379	+			-0.0
112,379	+			-0.2
112,379	+			+0.8
112,379	+			+0.4
112,379	+			+0.2
112,379	+			+0.0
112,379	+			+0.7
112,379	+			+1.8
112,379	+			+0.1
112,379	+			+0.3
112,380	-			+0.7
112,380	-			-0.3
112,380	-			-0.4
112,380	-			+0.0
112,380	-			+0.0
112,380	-			+0.6
112,380	-			-0.1
112,380	-			-2.7
112,433	+			+1.9
112,433	+			-0.3
112,434	-			+0.3
112,434	-			+2.3
112,899	+	DZA65_RS00470	0.46	+0.5
112,988	-	DZA65_RS00470	0.54	-0.5
112,988	-	DZA65_RS00470	0.54	-0.9
112,988	-	DZA65_RS00470	0.54	+0.5
112,988	-	DZA65_RS00470	0.54	+1.3
113,024	+	DZA65_RS00470	0.57	-0.5
113,025	-	DZA65_RS00470	0.57	+0.1
113,025	-	DZA65_RS00470	0.57	+0.9
113,025	-	DZA65_RS00470	0.57	-0.1
113,025	-	DZA65_RS00470	0.57	-2.1
113,025	-	DZA65_RS00470	0.57	+0.5
113,025	-	DZA65_RS00470	0.57	+0.5
113,025	-	DZA65_RS00470	0.57	+0.6
113,025	-	DZA65_RS00470	0.57	+0.2
113,025	-	DZA65_RS00470	0.57	+0.5
113,025	-	DZA65_RS00470	0.57	+0.3
113,025	-	DZA65_RS00470	0.57	+2.2
113,211	+	DZA65_RS00470	0.73	+0.2
113,250	+	DZA65_RS00470	0.77	-0.7
113,250	+	DZA65_RS00470	0.77	-1.4
113,252	+	DZA65_RS00470	0.77	-2.1
113,252	+	DZA65_RS00470	0.77	-0.8
113,252	+	DZA65_RS00470	0.77	-1.3
113,253	-	DZA65_RS00470	0.77	-0.3
113,253	-	DZA65_RS00470	0.77	-1.0
113,253	-	DZA65_RS00470	0.77	-0.9
113,253	-	DZA65_RS00470	0.77	-0.8
113,253	-	DZA65_RS00470	0.77	+0.3
113,253	-	DZA65_RS00470	0.77	-0.6
113,253	-	DZA65_RS00470	0.77	+0.8
113,267	+	DZA65_RS00470	0.78	-1.5
113,267	+	DZA65_RS00470	0.78	-0.3
113,364	+	DZA65_RS00470	0.87	-0.2
113,364	+	DZA65_RS00470	0.87	-0.9
113,365	-	DZA65_RS00470	0.87	-1.5
113,365	-	DZA65_RS00470	0.87	-0.4
113,387	+	DZA65_RS00470	0.89	-1.3
113,388	-	DZA65_RS00470	0.89	-1.8
113,397	+	DZA65_RS00470	0.90	-0.5
113,501	+			-1.1
113,501	+			-1.1
113,541	-			-1.1
113,541	-			-0.1
113,581	+	DZA65_RS00475	0.17	-0.1
113,581	+	DZA65_RS00475	0.17	+0.5
113,582	-	DZA65_RS00475	0.17	-0.1
113,582	-	DZA65_RS00475	0.17	+1.4
113,699	+	DZA65_RS00475	0.44	+0.1
113,699	+	DZA65_RS00475	0.44	+1.5
113,699	+	DZA65_RS00475	0.44	+0.3
113,699	+	DZA65_RS00475	0.44	+0.0
113,700	-	DZA65_RS00475	0.44	-1.1
113,700	-	DZA65_RS00475	0.44	+0.0
113,700	-	DZA65_RS00475	0.44	-0.4
113,821	+	DZA65_RS00475	0.72	-0.7
113,822	-	DZA65_RS00475	0.73	+0.4
113,822	-	DZA65_RS00475	0.73	+0.5
113,822	-	DZA65_RS00475	0.73	-0.5
113,853	+	DZA65_RS00475	0.80	-2.6
113,853	+	DZA65_RS00475	0.80	+0.8
113,853	+	DZA65_RS00475	0.80	-0.2
113,853	+	DZA65_RS00475	0.80	+0.7
113,854	-	DZA65_RS00475	0.80	+0.9
113,854	-	DZA65_RS00475	0.80	-0.9
113,854	-	DZA65_RS00475	0.80	+0.0
113,854	-	DZA65_RS00475	0.80	+0.1
113,854	-	DZA65_RS00475	0.80	+0.2
113,854	-	DZA65_RS00475	0.80	-1.2
113,859	+	DZA65_RS00475	0.81	-1.7
113,859	+	DZA65_RS00475	0.81	-0.3
113,904	-			-0.2
113,904	-			-0.4
113,904	-			+0.1
113,917	+			+0.1
113,967	-			-0.5
113,997	+			-0.2
113,998	-			-0.6
114,022	+			-0.2
114,022	+			+0.2
114,023	-			+0.5
114,023	-			-1.5
114,038	+			+0.1
114,038	+			+1.2
114,038	+			-0.1
114,039	-			+0.5
114,039	-			-1.1
114,106	+			-0.1
114,106	+			-0.0
114,107	-			+0.5
114,155	+			-0.5
114,155	+			+0.1
114,155	+			+0.8
114,155	+			-0.2
114,155	+			+1.1
114,155	+			-0.2
114,155	+			+2.0
114,155	+			+0.7
114,155	+			-0.6
114,155	+			+0.6
114,155	+			-0.7
114,155	+			+0.6
114,155	+			+1.5
114,155	+			-1.0
114,155	+			-0.1
114,155	+			-1.4
114,155	+			-0.6
114,155	+			+1.9
114,156	-			+0.5
114,156	-			+1.0
114,156	-			-0.1
114,156	-			-1.4
114,156	-			+0.2
114,156	-			-0.3
114,156	-			+0.3
114,156	-			-0.5
114,156	-			-0.1
114,156	-			-0.2
114,156	-			-0.8
114,156	-			-0.8
114,156	-			+1.1
114,156	-			+1.2
114,156	-			+0.2
114,156	-			-2.1
114,156	-			-0.3
114,232	+	DZA65_RS00480	0.13	-1.4
114,232	+	DZA65_RS00480	0.13	-0.2
114,232	+	DZA65_RS00480	0.13	+0.8
114,233	-	DZA65_RS00480	0.13	+0.7
114,233	-	DZA65_RS00480	0.13	-3.2
114,233	-	DZA65_RS00480	0.13	-0.9
114,233	-	DZA65_RS00480	0.13	-1.3
114,233	-	DZA65_RS00480	0.13	-2.0
114,255	+	DZA65_RS00480	0.14	-1.1
114,255	+	DZA65_RS00480	0.14	+0.1
114,256	-	DZA65_RS00480	0.14	-0.8
114,289	+	DZA65_RS00480	0.17	+0.3
114,290	-	DZA65_RS00480	0.17	+1.8
114,342	+	DZA65_RS00480	0.20	-0.4
114,354	+	DZA65_RS00480	0.21	-0.1
114,354	+			+0.1
114,354	+	DZA65_RS00480	0.21	-1.1
114,354	+	DZA65_RS00480	0.21	+0.3
114,355	-	DZA65_RS00480	0.21	-2.1
114,355	-	DZA65_RS00480	0.21	-0.2
114,355	-	DZA65_RS00480	0.21	+0.3
114,355	-	DZA65_RS00480	0.21	+0.3
114,355	-	DZA65_RS00480	0.21	+0.1
114,407	+	DZA65_RS00480	0.24	-1.1
114,408	-	DZA65_RS00480	0.24	+1.4
114,431	+	DZA65_RS00480	0.26	+0.1
114,431	+	DZA65_RS00480	0.26	-0.2
114,431	+	DZA65_RS00480	0.26	+0.5
114,431	+	DZA65_RS00480	0.26	-0.2
114,431	+	DZA65_RS00480	0.26	-2.8
114,431	+	DZA65_RS00480	0.26	-0.3
114,432	-	DZA65_RS00480	0.26	-0.5
114,432	-	DZA65_RS00480	0.26	-0.3
114,432	-			+2.1
114,432	-	DZA65_RS00480	0.26	+0.9
114,432	-	DZA65_RS00480	0.26	-2.1
114,484	+	DZA65_RS00480	0.29	+0.5
114,484	+	DZA65_RS00480	0.29	+0.5
114,484	+	DZA65_RS00480	0.29	+0.8
114,484	+	DZA65_RS00480	0.29	+0.0
114,485	-	DZA65_RS00480	0.29	+0.5
114,485	-	DZA65_RS00480	0.29	+0.9
114,485	-	DZA65_RS00480	0.29	-1.1
114,485	-	DZA65_RS00480	0.29	-0.2
114,489	-	DZA65_RS00480	0.30	-1.5
114,489	-	DZA65_RS00480	0.30	-1.1
114,489	-	DZA65_RS00480	0.30	-0.6
114,489	-	DZA65_RS00480	0.30	-0.3

Or see this region's nucleotide sequence