Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00285 and DZA65_RS00290 are separated by 273 nucleotides DZA65_RS00290 and DZA65_RS00295 are separated by 335 nucleotides
DZA65_RS00285: DZA65_RS00285 - superoxide dismutase [Mn], at 69,441 to 70,067
_RS00285
DZA65_RS00290: DZA65_RS00290 - formate dehydrogenase accessory sulfurtransferase FdhD, at 70,341 to 71,195
_RS00290
DZA65_RS00295: DZA65_RS00295 - aldehyde dehydrogenase, at 71,531 to 73,066
_RS00295
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 69.359 kb on + strand at 69.360 kb on - strand at 69.376 kb on - strand at 69.386 kb on - strand at 69.417 kb on + strand at 69.438 kb on + strand at 69.438 kb on + strand at 69.486 kb on + strand at 69.541 kb on + strand, within DZA65_RS00285 at 69.957 kb on - strand, within DZA65_RS00285 at 70.112 kb on + strand at 70.112 kb on + strand at 70.181 kb on + strand at 70.182 kb on - strand at 70.188 kb on + strand at 70.189 kb on - strand at 70.189 kb on - strand at 70.199 kb on + strand at 70.200 kb on - strand at 70.200 kb on - strand at 70.200 kb on - strand at 70.200 kb on - strand at 70.203 kb on + strand at 70.203 kb on + strand at 70.203 kb on + strand at 70.203 kb on + strand at 70.204 kb on - strand at 70.204 kb on - strand at 70.207 kb on + strand at 70.227 kb on + strand at 70.269 kb on + strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.303 kb on - strand at 70.308 kb on + strand at 70.308 kb on + strand at 70.308 kb on + strand at 70.308 kb on + strand at 70.309 kb on - strand at 70.309 kb on - strand at 70.312 kb on + strand at 70.312 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.324 kb on - strand at 70.324 kb on - strand at 70.324 kb on - strand at 70.324 kb on - strand at 70.368 kb on - strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.511 kb on - strand, within DZA65_RS00290 at 70.511 kb on - strand, within DZA65_RS00290 at 70.869 kb on + strand, within DZA65_RS00290 at 70.870 kb on - strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.899 kb on + strand, within DZA65_RS00290 at 70.899 kb on + strand, within DZA65_RS00290 at 70.900 kb on - strand, within DZA65_RS00290 at 70.900 kb on - strand, within DZA65_RS00290 at 70.900 kb on - strand, within DZA65_RS00290 at 70.910 kb on + strand, within DZA65_RS00290 at 70.911 kb on - strand, within DZA65_RS00290 at 70.921 kb on + strand, within DZA65_RS00290 at 70.921 kb on + strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 71.010 kb on + strand at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.021 kb on + strand, within DZA65_RS00290 at 71.022 kb on - strand, within DZA65_RS00290 at 71.022 kb on - strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.030 kb on - strand, within DZA65_RS00290 at 71.030 kb on - strand, within DZA65_RS00290 at 71.030 kb on - strand, within DZA65_RS00290 at 71.183 kb on + strand at 71.183 kb on + strand at 71.183 kb on + strand at 71.184 kb on - strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.205 kb on - strand at 71.205 kb on - strand at 71.269 kb on + strand at 71.275 kb on + strand at 71.275 kb on + strand at 71.288 kb on - strand at 71.339 kb on - strand at 71.339 kb on - strand at 71.350 kb on - strand at 71.367 kb on + strand at 71.367 kb on + strand at 71.367 kb on + strand at 71.367 kb on + strand at 71.377 kb on - strand at 71.383 kb on + strand at 71.384 kb on - strand at 71.400 kb on + strand at 71.400 kb on + strand at 71.400 kb on + strand at 71.412 kb on - strand at 71.412 kb on - strand at 71.412 kb on - strand at 71.419 kb on + strand at 71.488 kb on + strand at 71.488 kb on + strand at 71.489 kb on - strand at 71.489 kb on - strand at 71.489 kb on - strand at 71.543 kb on - strand at 71.556 kb on + strand at 71.556 kb on + strand at 71.556 kb on + strand at 71.557 kb on - strand at 71.571 kb on - strand at 71.571 kb on - strand at 71.585 kb on - strand at 71.648 kb on + strand at 71.648 kb on + strand at 71.648 kb on + strand at 71.648 kb on + strand at 71.649 kb on - strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.707 kb on + strand, within DZA65_RS00295 at 71.773 kb on + strand, within DZA65_RS00295 at 71.774 kb on - strand, within DZA65_RS00295 at 71.774 kb on - strand, within DZA65_RS00295 at 71.774 kb on - strand, within DZA65_RS00295 at 71.805 kb on + strand, within DZA65_RS00295 at 71.806 kb on - strand, within DZA65_RS00295 at 71.990 kb on + strand, within DZA65_RS00295 at 71.990 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 69,359 + -0.5 69,360 - +0.3 69,376 - +0.0 69,386 - -0.6 69,417 + -1.1 69,438 + +1.4 69,438 + -0.4 69,486 + +0.5 69,541 + DZA65_RS00285 0.16 -2.3 69,957 - DZA65_RS00285 0.82 -0.5 70,112 + +1.1 70,112 + -0.8 70,181 + +0.5 70,182 - +0.1 70,188 + -0.1 70,189 - -0.6 70,189 - +0.9 70,199 + +1.3 70,200 - -0.6 70,200 - +0.5 70,200 - +1.1 70,200 - +0.5 70,203 + -0.1 70,203 + -0.3 70,203 + -1.5 70,203 + -0.1 70,204 - -1.2 70,204 - -0.1 70,207 + +0.2 70,227 + +0.9 70,269 + -0.3 70,273 - +1.1 70,273 - -1.8 70,303 - -0.0 70,308 + -0.4 70,308 + -0.4 70,308 + -0.5 70,308 + -1.2 70,309 - -0.4 70,309 - -0.4 70,312 + +0.9 70,312 + -0.8 70,318 + -1.3 70,318 + +0.7 70,318 + +0.7 70,318 + +1.1 70,318 + +0.5 70,318 + +0.0 70,318 + +1.1 70,318 + +1.0 70,318 + -1.8 70,318 + +1.3 70,319 - +0.2 70,319 - -0.8 70,319 - +0.7 70,319 - -2.0 70,319 - -1.3 70,319 - -0.4 70,319 - +0.9 70,319 - -2.6 70,323 + +0.1 70,323 + -2.1 70,323 + +4.2 70,323 + -0.7 70,323 + -0.7 70,323 + +1.2 70,323 + +0.8 70,323 + +0.1 70,324 - -0.0 70,324 - +0.2 70,324 - +0.8 70,324 - +0.7 70,368 - -0.5 70,369 + +0.2 70,369 + +1.1 70,369 + +0.5 70,369 + +0.1 70,369 + -0.9 70,369 + -2.7 70,369 + +0.0 70,369 + -0.6 70,369 + -0.1 70,369 + +2.1 70,369 + +0.2 70,369 + +0.8 70,369 + +1.3 70,369 + -0.2 70,369 + -0.5 70,369 + +0.8 70,369 + +1.6 70,369 + +0.2 70,369 + +1.3 70,369 + -1.2 70,369 + -0.9 70,369 + +2.1 70,369 + -1.3 70,369 + -0.3 70,370 - -0.5 70,370 - -0.6 70,370 - -0.2 70,370 - -1.8 70,370 - -0.2 70,370 - -1.5 70,370 - -1.0 70,370 - +0.1 70,370 - +0.4 70,370 - +0.2 70,370 - -0.8 70,370 - -1.2 70,370 - -0.2 70,370 - -0.3 70,370 - -1.1 70,370 - +4.2 70,370 - -0.5 70,370 - -1.8 70,370 - +0.7 70,370 - +0.8 70,370 - -0.4 70,511 - DZA65_RS00290 0.20 +1.8 70,511 - DZA65_RS00290 0.20 -0.5 70,869 + DZA65_RS00290 0.62 -0.8 70,870 - DZA65_RS00290 0.62 -0.2 70,895 + DZA65_RS00290 0.65 +0.3 70,895 + DZA65_RS00290 0.65 -0.7 70,895 + DZA65_RS00290 0.65 -0.7 70,895 + DZA65_RS00290 0.65 +2.5 70,895 + DZA65_RS00290 0.65 +0.4 70,895 + DZA65_RS00290 0.65 +0.1 70,896 - DZA65_RS00290 0.65 -2.1 70,896 - DZA65_RS00290 0.65 +0.5 70,896 - DZA65_RS00290 0.65 +0.1 70,896 - DZA65_RS00290 0.65 +0.8 70,896 - DZA65_RS00290 0.65 -0.7 70,899 + DZA65_RS00290 0.65 -1.7 70,899 + DZA65_RS00290 0.65 +0.9 70,900 - DZA65_RS00290 0.65 +0.1 70,900 - DZA65_RS00290 0.65 +1.2 70,900 - DZA65_RS00290 0.65 +0.2 70,910 + DZA65_RS00290 0.67 -0.3 70,911 - DZA65_RS00290 0.67 +1.1 70,921 + DZA65_RS00290 0.68 +1.3 70,921 + DZA65_RS00290 0.68 +0.3 70,922 - DZA65_RS00290 0.68 +0.2 70,922 - DZA65_RS00290 0.68 +1.7 70,922 - DZA65_RS00290 0.68 -0.2 70,922 - DZA65_RS00290 0.68 -0.3 71,010 + +1.9 71,010 + DZA65_RS00290 0.78 +0.6 71,010 + DZA65_RS00290 0.78 +0.3 71,010 + DZA65_RS00290 0.78 -1.1 71,010 + DZA65_RS00290 0.78 -0.3 71,010 + DZA65_RS00290 0.78 -1.0 71,010 + DZA65_RS00290 0.78 +0.7 71,010 + DZA65_RS00290 0.78 -1.7 71,010 + DZA65_RS00290 0.78 -0.1 71,010 + DZA65_RS00290 0.78 +1.5 71,010 + DZA65_RS00290 0.78 +0.5 71,010 + DZA65_RS00290 0.78 +0.4 71,010 + DZA65_RS00290 0.78 +1.7 71,011 - DZA65_RS00290 0.78 +0.1 71,011 - DZA65_RS00290 0.78 -0.2 71,011 - DZA65_RS00290 0.78 +0.5 71,011 - DZA65_RS00290 0.78 -0.5 71,011 - DZA65_RS00290 0.78 -0.1 71,011 - DZA65_RS00290 0.78 -0.8 71,021 + DZA65_RS00290 0.80 +0.3 71,022 - DZA65_RS00290 0.80 -2.3 71,022 - DZA65_RS00290 0.80 -0.2 71,029 + DZA65_RS00290 0.80 +2.0 71,029 + DZA65_RS00290 0.80 -0.7 71,029 + DZA65_RS00290 0.80 -1.9 71,029 + DZA65_RS00290 0.80 +1.1 71,029 + DZA65_RS00290 0.80 -0.5 71,029 + DZA65_RS00290 0.80 +2.8 71,029 + DZA65_RS00290 0.80 -0.1 71,030 - DZA65_RS00290 0.81 -0.4 71,030 - DZA65_RS00290 0.81 -0.1 71,030 - DZA65_RS00290 0.81 +1.8 71,183 + +0.5 71,183 + +2.5 71,183 + -0.8 71,184 - +0.1 71,204 + -0.8 71,204 + +0.1 71,204 + -1.5 71,204 + +0.8 71,204 + -0.0 71,204 + -0.7 71,204 + +0.1 71,205 - +0.5 71,205 - +0.7 71,269 + +1.2 71,275 + -1.8 71,275 + -0.2 71,288 - +2.0 71,339 - -1.0 71,339 - -1.4 71,350 - +0.2 71,367 + +1.4 71,367 + +0.8 71,367 + -0.1 71,367 + -1.1 71,377 - +0.1 71,383 + +1.1 71,384 - +2.1 71,400 + +0.2 71,400 + -0.2 71,400 + +0.3 71,412 - +0.5 71,412 - +0.2 71,412 - -0.2 71,419 + +0.7 71,488 + -0.2 71,488 + -1.4 71,489 - -0.9 71,489 - -0.1 71,489 - +1.3 71,543 - -0.8 71,556 + +0.2 71,556 + -0.9 71,556 + +0.5 71,557 - -1.0 71,571 - -0.6 71,571 - +2.1 71,585 - +0.5 71,648 + +0.1 71,648 + -0.4 71,648 + -0.5 71,648 + +0.3 71,649 - -1.2 71,651 + -1.1 71,651 + +0.9 71,651 + -0.7 71,651 + -0.1 71,651 + +0.0 71,652 - -0.6 71,652 - +0.5 71,652 - -0.5 71,652 - +0.7 71,652 - -1.1 71,652 - -0.2 71,652 - -0.0 71,652 - -1.8 71,652 - -1.0 71,707 + DZA65_RS00295 0.11 -0.4 71,773 + DZA65_RS00295 0.16 +0.2 71,774 - DZA65_RS00295 0.16 -0.0 71,774 - DZA65_RS00295 0.16 -1.1 71,774 - DZA65_RS00295 0.16 +0.2 71,805 + DZA65_RS00295 0.18 +0.5 71,806 - DZA65_RS00295 0.18 -0.7 71,990 + DZA65_RS00295 0.30 -0.4 71,990 + DZA65_RS00295 0.30 -2.0 72,165 + DZA65_RS00295 0.41 +2.1 72,165 + DZA65_RS00295 0.41 -1.3 72,165 + DZA65_RS00295 0.41 +0.1 72,165 + DZA65_RS00295 0.41 -1.4 72,165 + DZA65_RS00295 0.41 -2.0 72,165 + DZA65_RS00295 0.41 -0.0 72,165 + DZA65_RS00295 0.41 +0.1 72,165 + DZA65_RS00295 0.41 -0.4 72,166 - DZA65_RS00295 0.41 +0.1 72,166 - DZA65_RS00295 0.41 -0.6 72,166 - +0.5 72,166 - DZA65_RS00295 0.41 +0.0 72,166 - DZA65_RS00295 0.41 +0.7 72,166 - DZA65_RS00295 0.41 -1.6 72,166 - DZA65_RS00295 0.41 +0.0 72,166 - DZA65_RS00295 0.41 -0.9 72,166 - DZA65_RS00295 0.41 -2.4 72,166 - DZA65_RS00295 0.41 +0.5 72,166 - DZA65_RS00295 0.41 -0.0 72,166 - DZA65_RS00295 0.41 -0.1
Or see this region's nucleotide sequence