Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22815

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,052,797	+		DZA65_RS05100	0.81	-1.5
1,052,798	-		DZA65_RS05100	0.81	+0.4
1,052,798	-		DZA65_RS05100	0.81	+0.4
1,052,798	-		DZA65_RS05100	0.81	+1.9
1,052,798	-		DZA65_RS05100	0.81	-1.1
1,052,853	+		DZA65_RS05100	0.83	-0.9
1,052,853	+		DZA65_RS05100	0.83	-0.8
1,052,853	+		DZA65_RS05100	0.83	-0.1
1,052,853	+		DZA65_RS05100	0.83	+1.1
1,052,853	+		DZA65_RS05100	0.83	+0.9
1,052,853	+		DZA65_RS05100	0.83	-0.3
1,052,853	+		DZA65_RS05100	0.83	+0.2
1,052,853	+		DZA65_RS05100	0.83	-0.4
1,052,853	+		DZA65_RS05100	0.83	-1.1
1,052,853	+		DZA65_RS05100	0.83	+0.4
1,052,853	+		DZA65_RS05100	0.83	+0.1
1,052,853	+		DZA65_RS05100	0.83	+0.4
1,052,853	+		DZA65_RS05100	0.83	+0.9
1,052,853	+		DZA65_RS05100	0.83	-1.9
1,052,854	-		DZA65_RS05100	0.83	-2.1
1,052,854	-		DZA65_RS05100	0.83	-0.4
1,052,854	-		DZA65_RS05100	0.83	+0.0
1,052,854	-		DZA65_RS05100	0.83	+0.8
1,052,854	-		DZA65_RS05100	0.83	-2.4
1,052,854	-		DZA65_RS05100	0.83	-1.0
1,052,854	-		DZA65_RS05100	0.83	+0.0
1,052,854	-		DZA65_RS05100	0.83	-0.2
1,052,854	-		DZA65_RS05100	0.83	+0.8
1,052,854	-		DZA65_RS05100	0.83	+0.4
1,052,854	-		DZA65_RS05100	0.83	+0.4
1,052,854	-		DZA65_RS05100	0.83	-0.7
1,052,924	-		DZA65_RS05100	0.85	-0.0
1,052,924	-		DZA65_RS05100	0.85	+1.9
1,052,924	-		DZA65_RS05100	0.85	+0.7
1,052,937	-		DZA65_RS05100	0.85	+0.4
1,052,968	+		DZA65_RS05100	0.86	+1.4
1,052,968	+		DZA65_RS05100	0.86	-2.1
1,052,983	+		DZA65_RS05100	0.86	+0.3
1,052,984	-		DZA65_RS05100	0.87	+1.8
1,052,984	-		DZA65_RS05100	0.87	+0.4
1,053,106	+		DZA65_RS05100	0.90	-0.4
1,053,106	+		DZA65_RS05100	0.90	+0.1
1,053,106	+		DZA65_RS05100	0.90	-0.9
1,053,107	-		DZA65_RS05100	0.90	-0.2
1,053,107	-		DZA65_RS05100	0.90	+0.4
1,053,125	-				+0.2
1,053,147	+				-1.1
1,053,147	+				-0.6
1,053,147	+				+0.2
1,053,148	-				+0.7
1,053,213	+				+0.0
1,053,213	+				+0.1
1,053,214	-				+0.1
1,053,237	+				+1.3
1,053,238	-				-0.3
1,053,351	+				-0.6
1,053,351	+				-0.7
1,053,351	+				+0.1
1,053,352	-				-1.4
1,053,352	-				-0.3
1,053,352	-				+0.3
1,053,360	+				-1.0
1,053,360	+				+0.1
1,053,360	+				-0.6
1,053,387	+				+0.3
1,053,387	+				-1.1
1,053,387	+				-1.6
1,053,387	+				-0.6
1,053,387	+				-0.7
1,053,387	+				+0.4
1,053,387	+				+0.4
1,053,387	+				-1.0
1,053,387	+				-0.6
1,053,387	+				-0.6
1,053,388	-				+0.8
1,053,388	-				+1.0
1,053,388	-				+0.2
1,053,388	-				+0.8
1,053,388	-				-0.0
1,053,388	-				+0.4
1,053,388	-				+0.3
1,053,388	-				-1.0
1,053,389	+				-1.1
1,053,389	+				-0.1
1,053,389	+				-0.6
1,053,389	+				-0.3
1,053,389	+				+0.3
1,053,389	+				-0.1
1,053,431	-				+2.2
1,053,515	+				+0.4
1,053,527	+				+1.2
1,053,528	-				+0.8
1,053,528	-				-0.5
1,053,528	-				+0.6
1,053,528	-				-0.0
1,053,528	-				+0.4
1,053,528	-				+0.6
1,053,557	+				+0.6
1,053,579	+				-1.6
1,053,579	+				-1.4
1,053,579	+				-0.7
1,053,579	+				-1.5
1,053,579	+				-1.0
1,053,579	+				+1.1
1,053,579	+				-0.2
1,053,579	+				+0.2
1,053,579	+				+0.4
1,053,579	+				-0.4
1,053,580	-				+1.2
1,053,580	-				+0.3
1,053,580	-				+0.2
1,053,580	-				+1.3
1,053,580	-				+0.8
1,053,580	-				-0.7
1,053,580	-				-0.8
1,053,580	-				-0.3
1,053,580	-				-0.4
1,053,580	-				-0.4
1,053,581	+				-0.3
1,053,582	-				-0.0
1,053,591	-				+0.2
1,053,591	-				+0.4
1,053,644	+		DZA65_RS22815	0.11	-0.1
1,053,647	-		DZA65_RS22815	0.11	-0.6
1,053,648	+		DZA65_RS22815	0.12	-3.0
1,053,648	+		DZA65_RS22815	0.12	-0.6
1,053,652	-		DZA65_RS22815	0.13	-0.6
1,053,674	-		DZA65_RS22815	0.19	-1.9
1,053,674	-		DZA65_RS22815	0.19	-0.1
1,053,676	+		DZA65_RS22815	0.19	+0.4
1,054,148	+		DZA65_RS05105	0.84	-0.1
1,054,203	+				+2.2
1,054,252	+				-1.9
1,054,253	-				-2.4
1,054,253	-				-0.8
1,054,253	-				-1.1
1,054,266	+				-2.0
1,054,267	-				-0.4
1,054,289	+				-0.1
1,054,303	+				-0.2
1,054,303	+				+0.7
1,054,303	+				+0.9
1,054,303	+				+0.4
1,054,304	-				-0.8
1,054,311	+				+0.2
1,054,403	+				-0.3
1,054,403	+				-1.7
1,054,404	-				+1.2
1,054,404	-				+1.4
1,054,404	-				-1.3
1,054,409	+				+0.9
1,054,409	+				+1.2
1,054,409	+				-0.6
1,054,409	+				-0.7
1,054,409	+				+0.1
1,054,409	+				+0.4
1,054,409	+				+1.2
1,054,410	-				+0.0
1,054,410	-				+0.1
1,054,410	-				-0.4
1,054,410	-				+0.1
1,054,410	-				+1.4
1,054,410	-				+0.3
1,054,410	-				-0.5
1,054,410	-				+0.5
1,054,411	+				+0.8
1,054,411	+				-1.0
1,054,411	+				-0.1
1,054,412	-				-3.0
1,054,412	-				-0.7
1,054,412	-				-1.5
1,054,412	-				+0.9
1,054,412	-				-0.1
1,054,412	-				-0.9
1,054,419	+				-0.6
1,054,424	+				+0.2
1,054,424	+				+0.3
1,054,424	+				+0.1
1,054,424	+				-0.0
1,054,425	-				-0.2
1,054,450	-				-0.7
1,054,480	+				-0.5
1,054,480	+				-0.1
1,054,480	+				+0.2
1,054,480	+				-0.4
1,054,494	+				+1.4
1,054,494	+				+0.2
1,054,495	-				-1.3
1,054,496	+				-1.0
1,054,579	+				+1.5
1,054,579	+				-1.1
1,054,580	-				-1.0
1,054,580	-				+0.2
1,054,582	+				-0.3
1,054,583	-				-0.6
1,054,583	-				-1.1
1,054,583	-				-0.2
1,054,669	+				-1.6
1,054,669	+				-0.3
1,054,669	+				+1.0
1,054,669	+				+0.4
1,054,670	-				+0.4
1,054,670	-				-0.0
1,054,670	-				-1.6
1,054,702	+				+0.4
1,054,703	-				-1.2
1,054,703	-				-0.3
1,054,763	-				-1.1
1,054,798	+				-0.1
1,054,798	+				-0.1
1,054,798	+				-0.8
1,054,798	+				-0.4
1,054,798	+				+0.8
1,054,963	+				+0.4
1,054,963	+				-0.3
1,054,963	+				+1.4
1,054,964	-				-1.2
1,054,964	-				-0.0
1,054,964	-				-0.8
1,054,964	-				+2.3
1,054,964	-				-0.2