Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22430

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,853,142	-				+1.9
4,853,184	+				+0.9
4,853,185	-				+0.6
4,853,185	-				+0.3
4,853,185	-				+1.6
4,853,281	+				-0.1
4,853,281	+				+0.9
4,853,282	-				+0.4
4,853,282	-				-0.6
4,853,289	+				-3.1
4,853,290	-				-2.5
4,853,335	+				-0.7
4,853,335	+				-0.3
4,853,335	+				+0.4
4,853,335	+				-1.5
4,853,335	+				-1.8
4,853,335	+				-0.7
4,853,335	+				-1.4
4,853,336	-				+0.3
4,853,336	-				-1.2
4,853,336	-				+1.8
4,853,351	+				+0.1
4,853,352	-				-1.4
4,853,367	+				-1.7
4,853,368	-				+1.6
4,853,368	-				-0.2
4,853,368	-				+0.4
4,853,404	+				-0.1
4,853,404	+				+0.6
4,853,404	+				+0.6
4,853,404	+				+1.4
4,853,404	+				-0.1
4,853,404	+				-1.4
4,853,404	+				-2.0
4,853,404	+				-0.8
4,853,405	-				+0.9
4,853,405	-				-0.3
4,853,457	-				-0.2
4,853,457	-				-0.3
4,853,457	-				+1.6
4,853,457	-				+1.0
4,853,476	+		DZA65_RS22430	0.12	-0.6
4,853,535	+		DZA65_RS22430	0.27	+0.6
4,853,535	+		DZA65_RS22430	0.27	+0.7
4,853,535	+		DZA65_RS22430	0.27	-0.7
4,853,535	+		DZA65_RS22430	0.27	-0.6
4,853,535	+		DZA65_RS22430	0.27	+1.0
4,853,535	+		DZA65_RS22430	0.27	-0.7
4,853,536	-		DZA65_RS22430	0.27	-0.1
4,853,536	-		DZA65_RS22430	0.27	-1.0
4,853,542	-		DZA65_RS22430	0.29	+1.3
4,853,557	+		DZA65_RS22430	0.33	+0.5
4,853,557	+		DZA65_RS22430	0.33	-1.4
4,853,557	+		DZA65_RS22430	0.33	-1.7
4,853,557	+		DZA65_RS22430	0.33	-0.1
4,853,557	+		DZA65_RS22430	0.33	-0.6
4,853,557	+		DZA65_RS22430	0.33	+0.2
4,853,557	+		DZA65_RS22430	0.33	+0.4
4,853,557	+		DZA65_RS22430	0.33	+1.1
4,853,558	-		DZA65_RS22430	0.33	+0.7
4,853,558	-		DZA65_RS22430	0.33	+0.4
4,853,558	-		DZA65_RS22430	0.33	-1.2
4,853,561	+		DZA65_RS22430	0.34	-0.3
4,853,561	+		DZA65_RS22430	0.34	-0.8
4,853,561	+		DZA65_RS22430	0.34	-1.0
4,853,561	+		DZA65_RS22430	0.34	+0.0
4,853,562	-		DZA65_RS22430	0.34	+0.8
4,853,562	-		DZA65_RS22430	0.34	-0.3
4,853,562	-		DZA65_RS22430	0.34	-0.0
4,853,562	-		DZA65_RS22430	0.34	-0.4
4,853,562	-		DZA65_RS22430	0.34	+1.6
4,853,567	-		DZA65_RS22430	0.35	-2.4
4,853,567	-		DZA65_RS22430	0.35	-0.2
4,853,617	+		DZA65_RS22430	0.48	+2.6
4,853,617	+		DZA65_RS22430	0.48	+1.3
4,853,621	+		DZA65_RS22430	0.49	-0.1
4,853,622	-		DZA65_RS22430	0.50	-0.2
4,853,622	-		DZA65_RS22430	0.50	-0.1
4,853,622	-		DZA65_RS22430	0.50	-1.8
4,853,666	+		DZA65_RS22430	0.61	-0.2
4,853,670	+		DZA65_RS22430	0.62	+0.5
4,853,685	+		DZA65_RS22430	0.66	+0.3
4,853,686	-		DZA65_RS22430	0.66	+0.3
4,853,686	-		DZA65_RS22430	0.66	-0.7
4,853,687	+		DZA65_RS22430	0.66	+0.2
4,853,687	+		DZA65_RS22430	0.66	-1.4
4,853,688	-		DZA65_RS22430	0.67	+0.3
4,853,697	+		DZA65_RS22430	0.69	-0.7
4,853,698	-		DZA65_RS22430	0.69	+0.1
4,853,709	+		DZA65_RS22430	0.72	+0.6
4,853,749	-		DZA65_RS22430	0.82	-0.3
4,853,765	+		DZA65_RS22430	0.87	+0.5
4,853,821	-				-0.5
4,853,858	-				-0.2
4,853,871	-				+1.7
4,853,922	+				-0.8
4,854,126	-		DZA65_RS22435	0.21	-0.4
4,854,160	+		DZA65_RS22435	0.24	+1.0
4,854,165	+		DZA65_RS22435	0.25	-0.8
4,854,185	-		DZA65_RS22435	0.27	-2.0
4,854,185	-		DZA65_RS22435	0.27	-0.7
4,854,189	+		DZA65_RS22435	0.27	+0.6
4,854,189	+		DZA65_RS22435	0.27	+0.5
4,854,242	-		DZA65_RS22435	0.32	+0.4
4,854,242	-		DZA65_RS22435	0.32	-0.1
4,854,297	-		DZA65_RS22435	0.37	+1.4
4,854,297	-		DZA65_RS22435	0.37	+1.2
4,854,297	-		DZA65_RS22435	0.37	-2.0
4,854,344	+		DZA65_RS22435	0.42	+0.1
4,854,344	+		DZA65_RS22435	0.42	+1.7
4,854,345	-		DZA65_RS22435	0.42	-0.7
4,854,406	-		DZA65_RS22435	0.47	-1.7
4,854,406	-		DZA65_RS22435	0.47	-1.0
4,854,406	-		DZA65_RS22435	0.47	+0.2
4,854,416	+		DZA65_RS22435	0.48	-0.7
4,854,416	+		DZA65_RS22435	0.48	+0.6
4,854,416	+		DZA65_RS22435	0.48	-0.1
4,854,417	-		DZA65_RS22435	0.49	-1.6
4,854,417	-		DZA65_RS22435	0.49	-0.6
4,854,417	-		DZA65_RS22435	0.49	-0.5
4,854,425	+		DZA65_RS22435	0.49	+0.9
4,854,426	-		DZA65_RS22435	0.49	+0.2
4,854,436	-		DZA65_RS22435	0.50	-1.8
4,854,436	-		DZA65_RS22435	0.50	+1.1
4,854,451	+		DZA65_RS22435	0.52	+0.6
4,854,451	+		DZA65_RS22435	0.52	+0.6
4,854,452	-		DZA65_RS22435	0.52	+0.6
4,854,452	-		DZA65_RS22435	0.52	-2.5
4,854,468	+		DZA65_RS22435	0.53	+1.8
4,854,469	-		DZA65_RS22435	0.53	-0.4
4,854,516	+		DZA65_RS22435	0.58	-0.7
4,854,516	+		DZA65_RS22435	0.58	-0.7
4,854,516	+		DZA65_RS22435	0.58	+0.6
4,854,516	+		DZA65_RS22435	0.58	+0.5
4,854,517	-		DZA65_RS22435	0.58	-0.1
4,854,519	+		DZA65_RS22435	0.58	+1.8
4,854,519	+		DZA65_RS22435	0.58	-0.4
4,854,519	+		DZA65_RS22435	0.58	+0.5
4,854,519	+		DZA65_RS22435	0.58	+0.8
4,854,519	+		DZA65_RS22435	0.58	-0.7
4,854,520	-		DZA65_RS22435	0.58	-0.4
4,854,520	-		DZA65_RS22435	0.58	+0.3
4,854,520	-		DZA65_RS22435	0.58	+0.7
4,854,520	-		DZA65_RS22435	0.58	-0.1
4,854,533	+		DZA65_RS22435	0.59	+1.0
4,854,534	-		DZA65_RS22435	0.59	-1.0
4,854,552	-		DZA65_RS22435	0.61	+0.6
4,854,612	+		DZA65_RS22435	0.67	+0.1
4,854,612	+		DZA65_RS22435	0.67	+0.2
4,854,612	+		DZA65_RS22435	0.67	+0.9
4,854,612	+		DZA65_RS22435	0.67	-0.8
4,854,612	+		DZA65_RS22435	0.67	+0.8
4,854,613	-		DZA65_RS22435	0.67	+1.3
4,854,613	-		DZA65_RS22435	0.67	-0.1
4,854,613	-		DZA65_RS22435	0.67	-0.4
4,854,649	-		DZA65_RS22435	0.70	-0.5
4,854,726	+		DZA65_RS22435	0.77	-0.0
4,854,726	+		DZA65_RS22435	0.77	+0.9
4,854,727	-		DZA65_RS22435	0.78	+0.2
4,854,750	+		DZA65_RS22435	0.80	+0.5
4,854,751	-		DZA65_RS22435	0.80	-2.2
4,854,761	+		DZA65_RS22435	0.81	+1.0
4,854,808	-		DZA65_RS22435	0.85	+0.2