Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22135

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,784,640	+		DZA65_RS22130	0.82	+0.4
4,784,670	+		DZA65_RS22130	0.83	+0.2
4,784,670	+		DZA65_RS22130	0.83	-0.5
4,784,670	+		DZA65_RS22130	0.83	+1.4
4,784,670	+		DZA65_RS22130	0.83	+1.1
4,784,670	+		DZA65_RS22130	0.83	+2.2
4,784,671	-		DZA65_RS22130	0.84	+1.4
4,784,671	-		DZA65_RS22130	0.84	-0.3
4,784,671	-		DZA65_RS22130	0.84	+1.6
4,784,671	-		DZA65_RS22130	0.84	+0.9
4,784,671	-		DZA65_RS22130	0.84	-0.4
4,784,671	-		DZA65_RS22130	0.84	-0.3
4,784,671	-		DZA65_RS22130	0.84	+0.2
4,784,671	-		DZA65_RS22130	0.84	+0.5
4,784,674	-		DZA65_RS22130	0.84	-0.8
4,784,807	-				-1.7
4,784,808	+				-0.4
4,784,809	-				-0.1
4,784,809	-				+0.6
4,784,809	-				-1.7
4,784,809	-				-0.9
4,784,891	-				-0.1
4,784,892	+				+0.2
4,784,892	+				-0.4
4,784,892	+				+0.3
4,784,892	+				-1.0
4,784,892	+				-0.5
4,784,893	-				-0.3
4,784,893	-				-1.4
4,784,912	+				-0.8
4,784,913	-				+1.9
4,784,917	+				-0.2
4,784,917	+				+0.3
4,784,917	+				+0.4
4,784,917	+				+0.1
4,784,918	-				-2.5
4,784,957	+				-1.7
4,784,958	-				-0.5
4,784,982	-				+0.6
4,785,110	-				-2.5
4,785,111	+				+0.0
4,785,112	-				-2.0
4,785,125	-				+0.1
4,785,135	+				-0.5
4,785,136	-				+0.3
4,785,136	-				-0.7
4,785,150	+				-1.0
4,785,159	+				-0.4
4,785,159	+				+0.2
4,785,159	+				-1.4
4,785,159	+				-0.8
4,785,159	+				+1.6
4,785,159	+				+0.8
4,785,159	+				+0.2
4,785,160	-				-0.2
4,785,160	-				-0.5
4,785,160	-				+1.2
4,785,160	-				-2.4
4,785,160	-				+0.2
4,785,160	-				-2.4
4,785,160	-				-0.0
4,785,160	-				+1.6
4,785,160	-				+0.1
4,785,160	-				+0.4
4,785,160	-				-0.0
4,785,238	+				+0.3
4,785,238	+				-1.5
4,785,239	-				+0.6
4,785,273	+				-1.0
4,785,273	+				-0.1
4,785,407	-				+0.3
4,785,474	+				-1.3
4,785,474	+				+0.6
4,785,475	-				-2.2
4,785,534	+				-2.0
4,785,537	+				-0.1
4,785,538	-				+0.5
4,785,554	+				-0.2
4,785,555	-				+0.2
4,785,555	-				-0.4
4,785,555	-				-0.1
4,785,656	-				-2.2
4,786,001	+		DZA65_RS22135	0.25	-0.1
4,786,002	-		DZA65_RS22135	0.25	-0.3
4,786,002	-		DZA65_RS22135	0.25	-1.3
4,786,101	-		DZA65_RS22135	0.31	-1.6
4,786,101	-		DZA65_RS22135	0.31	+0.8
4,786,101	-		DZA65_RS22135	0.31	-0.4
4,786,247	+		DZA65_RS22135	0.40	-1.2
4,786,247	+		DZA65_RS22135	0.40	-1.4
4,786,247	+		DZA65_RS22135	0.40	-0.5
4,786,248	-		DZA65_RS22135	0.40	-1.5
4,786,248	-		DZA65_RS22135	0.40	-0.6
4,786,251	-				+0.6
4,786,251	-		DZA65_RS22135	0.40	-0.5
4,786,271	+		DZA65_RS22135	0.41	-0.7
4,786,271	+		DZA65_RS22135	0.41	-0.0
4,786,271	+		DZA65_RS22135	0.41	-0.1
4,786,271	+		DZA65_RS22135	0.41	+0.3
4,786,271	+		DZA65_RS22135	0.41	-0.6
4,786,272	-		DZA65_RS22135	0.41	-1.0
4,786,272	-		DZA65_RS22135	0.41	-2.7
4,786,272	-		DZA65_RS22135	0.41	+0.6
4,786,344	+		DZA65_RS22135	0.45	+0.6
4,786,345	-		DZA65_RS22135	0.45	+0.5
4,786,345	-		DZA65_RS22135	0.45	-0.1
4,786,455	+		DZA65_RS22135	0.52	+1.6
4,786,455	+		DZA65_RS22135	0.52	+0.9
4,786,594	+		DZA65_RS22135	0.60	-0.8
4,786,594	+		DZA65_RS22135	0.60	+1.6
4,786,594	+		DZA65_RS22135	0.60	-1.2
4,786,595	-		DZA65_RS22135	0.60	+1.6
4,786,595	-		DZA65_RS22135	0.60	-0.5
4,786,595	-		DZA65_RS22135	0.60	-0.8
4,786,595	-		DZA65_RS22135	0.60	+0.6
4,786,595	-		DZA65_RS22135	0.60	-1.0
4,786,595	-		DZA65_RS22135	0.60	-0.4
4,786,598	+		DZA65_RS22135	0.60	-0.5
4,786,598	+		DZA65_RS22135	0.60	-1.0
4,786,598	+		DZA65_RS22135	0.60	+0.4
4,786,598	+		DZA65_RS22135	0.60	+0.4
4,786,598	+		DZA65_RS22135	0.60	-0.6
4,786,598	+		DZA65_RS22135	0.60	-0.4
4,786,598	+		DZA65_RS22135	0.60	+0.2
4,786,599	-		DZA65_RS22135	0.60	+1.1
4,786,599	-		DZA65_RS22135	0.60	+0.8
4,786,599	-		DZA65_RS22135	0.60	+0.4
4,786,599	-		DZA65_RS22135	0.60	+0.6
4,786,599	-		DZA65_RS22135	0.60	+0.6
4,786,709	+		DZA65_RS22135	0.67	-0.2
4,786,709	+		DZA65_RS22135	0.67	-2.7
4,786,709	+		DZA65_RS22135	0.67	-0.2
4,786,709	+		DZA65_RS22135	0.67	+0.1
4,786,710	-		DZA65_RS22135	0.67	-0.6
4,786,710	-		DZA65_RS22135	0.67	+0.8
4,786,710	-		DZA65_RS22135	0.67	-0.2
4,786,710	-		DZA65_RS22135	0.67	+0.4
4,786,710	-		DZA65_RS22135	0.67	-0.2
4,786,710	-		DZA65_RS22135	0.67	+0.2
4,786,713	+		DZA65_RS22135	0.67	+0.1
4,786,713	+		DZA65_RS22135	0.67	+0.2
4,786,713	+		DZA65_RS22135	0.67	-2.2
4,786,713	+		DZA65_RS22135	0.67	-0.9
4,786,713	+		DZA65_RS22135	0.67	+0.6
4,786,713	+		DZA65_RS22135	0.67	-0.4
4,786,713	+		DZA65_RS22135	0.67	-1.4
4,786,713	+		DZA65_RS22135	0.67	-1.0
4,786,713	+		DZA65_RS22135	0.67	-1.8
4,786,713	+		DZA65_RS22135	0.67	+0.5
4,786,713	+				-0.4
4,786,713	+		DZA65_RS22135	0.67	-0.4
4,786,714	-		DZA65_RS22135	0.67	+1.6
4,786,714	-		DZA65_RS22135	0.67	-1.0
4,786,714	-		DZA65_RS22135	0.67	+0.8
4,786,714	-		DZA65_RS22135	0.67	-1.4
4,786,714	-		DZA65_RS22135	0.67	-1.2
4,786,714	-		DZA65_RS22135	0.67	-0.8
4,786,714	-		DZA65_RS22135	0.67	-0.6
4,786,714	-		DZA65_RS22135	0.67	-0.8
4,786,714	-		DZA65_RS22135	0.67	-0.4
4,786,714	-		DZA65_RS22135	0.67	-0.2
4,786,714	-		DZA65_RS22135	0.67	-0.2
4,786,745	+		DZA65_RS22135	0.69	+3.6
4,786,746	-		DZA65_RS22135	0.69	-1.4
4,786,746	-		DZA65_RS22135	0.69	+1.0
4,786,857	+		DZA65_RS22135	0.76	+0.2
4,786,857	+		DZA65_RS22135	0.76	-0.6
4,786,857	+		DZA65_RS22135	0.76	-0.3
4,786,858	-		DZA65_RS22135	0.76	-0.8
4,786,858	-		DZA65_RS22135	0.76	+1.6
4,786,858	-		DZA65_RS22135	0.76	-0.1
4,787,079	+		DZA65_RS22135	0.89	-0.2
4,787,079	+		DZA65_RS22135	0.89	-1.5
4,787,079	+		DZA65_RS22135	0.89	-0.6
4,787,080	-		DZA65_RS22135	0.89	+0.4
4,787,115	+				+1.4
4,787,116	-				-0.1
4,787,118	+				-0.1
4,787,118	+				-1.0
4,787,118	+				+1.1
4,787,118	+				-0.1
4,787,119	-				-0.0
4,787,119	-				+0.6
4,787,250	+				-0.6
4,787,250	+				+0.4
4,787,250	+				-0.4
4,787,250	+				+0.3
4,787,250	+				-2.0
4,787,250	+				-0.3
4,787,251	-				+1.6
4,787,251	-				+1.0
4,787,251	-				-2.2
4,787,251	-				-0.1
4,787,251	-				-0.3
4,787,251	-				+1.0
4,787,251	-				+0.4
4,787,289	-				+1.4
4,787,289	-				+0.8
4,787,289	-				-1.1
4,787,323	+				+0.4
4,787,323	+				-0.1
4,787,323	+				-0.5
4,787,323	+				+0.3
4,787,323	+				-0.3
4,787,324	-				+1.2
4,787,324	-				-0.3
4,787,324	-				+0.5
4,787,326	+				+0.2
4,787,326	+				-0.1
4,787,326	+				-1.5
4,787,327	-				+1.0
4,787,327	-				+0.1
4,787,327	-				-0.1
4,787,345	+				-0.3
4,787,345	+				-0.4
4,787,345	+				-0.3
4,787,346	-				+1.6
4,787,360	-				-1.4
4,787,411	-				+1.4
4,787,411	-				+0.6
4,787,412	+				-2.0
4,787,412	+				-1.0
4,787,412	+				+1.0
4,787,412	+				-0.2
4,787,412	+				-1.0
4,787,412	+				-0.7
4,787,412	+				+2.0
4,787,413	-				+0.2
4,787,413	-				+0.9
4,787,413	-				-0.7
4,787,413	-				-2.2
4,787,413	-				+0.0
4,787,413	-				+0.0
4,787,413	-				+1.5
4,787,413	-				-2.4
4,787,413	-				+0.4
4,787,460	+				+0.3
4,787,460	+				-0.3
4,787,460	+				+0.8
4,787,461	-				+2.1
4,787,461	-				-1.6
4,787,461	-				-1.0
4,787,461	-				+0.4
4,787,461	-				-1.0
4,787,461	-				-0.0
4,787,461	-				-1.7
4,787,483	-				+0.4
4,787,483	-				+1.8
4,787,483	-				+0.2
4,787,516	+				+1.0
4,787,516	+				+0.1
4,787,516	+				+0.7
4,787,516	+				-0.8
4,787,516	+				+0.2
4,787,516	+				-0.0
4,787,516	+				-0.4
4,787,516	+				+0.2
4,787,516	+				-0.1
4,787,517	-				-0.1
4,787,518	+				+0.2
4,787,518	+				+0.0
4,787,518	+				+1.0
4,787,518	+				-0.5
4,787,518	+				+0.9
4,787,518	+				+0.6
4,787,518	+				+0.3
4,787,518	+				-1.3
4,788,181	+				+0.6
4,788,181	+				+0.6
4,788,181	+				-0.5
4,788,181	+				-0.3
4,788,193	+				-0.1
4,788,193	+				-0.2
4,788,194	-				-1.7
4,788,219	+				+1.9
4,788,219	+				+0.4
4,788,253	+				+0.5
4,788,253	+				-0.7
4,788,253	+				+0.4
4,788,260	+				+0.0
4,788,260	+				-1.8
4,788,260	+				+2.0